Spaces:
Paused
Paused
Update app.py
Browse files
app.py
CHANGED
@@ -1,91 +1,66 @@
|
|
1 |
-
import
|
2 |
import torch
|
3 |
-
from transformers import AutoModel, AutoTokenizer, BitsAndBytesConfig
|
4 |
-
import gradio as gr
|
5 |
from PIL import Image
|
6 |
-
from
|
7 |
|
8 |
# Get API token from environment variable
|
9 |
api_token = os.getenv("HF_TOKEN").strip()
|
10 |
|
11 |
-
#
|
12 |
bnb_config = BitsAndBytesConfig(
|
13 |
-
load_in_4bit=True,
|
14 |
-
bnb_4bit_quant_type="nf4",
|
15 |
-
bnb_4bit_use_double_quant=True,
|
16 |
-
bnb_4bit_compute_dtype=torch.float16
|
17 |
)
|
18 |
|
19 |
-
#
|
20 |
model = AutoModel.from_pretrained(
|
21 |
-
"ContactDoctor/Bio-Medical-MultiModal-Llama-3-8B-V1",
|
22 |
-
quantization_config=bnb_config,
|
23 |
-
device_map="auto",
|
24 |
-
torch_dtype=torch.float16,
|
25 |
-
trust_remote_code=True,
|
26 |
attn_implementation="flash_attention_2",
|
27 |
-
token=api_token
|
28 |
)
|
29 |
-
|
30 |
tokenizer = AutoTokenizer.from_pretrained(
|
31 |
-
"ContactDoctor/Bio-Medical-MultiModal-Llama-3-8B-V1",
|
32 |
-
trust_remote_code=True
|
33 |
-
token=api_token
|
34 |
)
|
35 |
|
36 |
-
def analyze_input(image, question):
|
37 |
-
try:
|
38 |
-
if image is not None:
|
39 |
-
# Convert to RGB if image is provided
|
40 |
-
image = image.convert('RGB')
|
41 |
-
|
42 |
-
# Prepare messages in the format expected by the model
|
43 |
-
msgs = [{'role': 'user', 'content': [image, question]}]
|
44 |
-
|
45 |
-
# Generate response using the chat method
|
46 |
-
response_stream = model.chat(
|
47 |
-
image=image,
|
48 |
-
msgs=msgs,
|
49 |
-
tokenizer=tokenizer,
|
50 |
-
sampling=True,
|
51 |
-
temperature=0.95,
|
52 |
-
stream=True
|
53 |
-
)
|
54 |
-
|
55 |
-
# Collect the streamed response
|
56 |
-
generated_text = ""
|
57 |
-
for new_text in response_stream:
|
58 |
-
generated_text += new_text
|
59 |
-
print(new_text, flush=True, end='')
|
60 |
-
|
61 |
-
return {"status": "success", "response": generated_text}
|
62 |
-
|
63 |
-
except Exception as e:
|
64 |
-
import traceback
|
65 |
-
error_trace = traceback.format_exc()
|
66 |
-
print(f"Error occurred: {error_trace}")
|
67 |
-
return {"status": "error", "message": str(e)}
|
68 |
|
69 |
-
# Create Gradio interface
|
70 |
-
demo = gr.Interface(
|
71 |
-
fn=analyze_input,
|
72 |
-
inputs=[
|
73 |
-
gr.Image(type="pil", label="Upload Medical Image"),
|
74 |
-
gr.Textbox(
|
75 |
-
label="Medical Question",
|
76 |
-
placeholder="Give the modality, organ, analysis, abnormalities (if any), treatment (if abnormalities are present)?",
|
77 |
-
value="Give the modality, organ, analysis, abnormalities (if any), treatment (if abnormalities are present)?"
|
78 |
-
)
|
79 |
-
],
|
80 |
-
outputs=gr.JSON(label="Analysis"),
|
81 |
-
title="Medical Image Analysis Assistant",
|
82 |
-
description="Upload a medical image and ask questions about it. The AI will analyze the image and provide detailed responses."
|
83 |
-
)
|
84 |
|
85 |
-
|
86 |
-
|
87 |
-
|
88 |
-
|
89 |
-
|
90 |
-
|
91 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
from flask import Flask, request, jsonify
|
2 |
import torch
|
|
|
|
|
3 |
from PIL import Image
|
4 |
+
from transformers import AutoModel, AutoTokenizer, BitsAndBytesConfig
|
5 |
|
6 |
# Get API token from environment variable
|
7 |
api_token = os.getenv("HF_TOKEN").strip()
|
8 |
|
9 |
+
# Model configuration
|
10 |
bnb_config = BitsAndBytesConfig(
|
11 |
+
load_in_4bit=True,
|
12 |
+
bnb_4bit_quant_type="nf4",
|
13 |
+
bnb_4bit_use_double_quant=True,
|
14 |
+
bnb_4bit_compute_dtype=torch.float16,
|
15 |
)
|
16 |
|
17 |
+
# Model and tokenizer loading
|
18 |
model = AutoModel.from_pretrained(
|
19 |
+
"ContactDoctor/Bio-Medical-MultiModal-Llama-3-8B-V1",
|
20 |
+
quantization_config=bnb_config,
|
21 |
+
device_map="auto",
|
22 |
+
torch_dtype=torch.float16,
|
23 |
+
trust_remote_code=True,
|
24 |
attn_implementation="flash_attention_2",
|
|
|
25 |
)
|
|
|
26 |
tokenizer = AutoTokenizer.from_pretrained(
|
27 |
+
"ContactDoctor/Bio-Medical-MultiModal-Llama-3-8B-V1",
|
28 |
+
trust_remote_code=True
|
|
|
29 |
)
|
30 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
31 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
32 |
|
33 |
+
app = Flask(__name__)
|
34 |
+
|
35 |
+
# Model configuration and loading (same as before)
|
36 |
+
|
37 |
+
@app.route('/analyze', methods=['POST'])
|
38 |
+
def analyze():
|
39 |
+
image = request.files['image']
|
40 |
+
question = request.form['question']
|
41 |
+
|
42 |
+
# Preprocess image
|
43 |
+
image = Image.open(image).convert('RGB')
|
44 |
+
|
45 |
+
# Prepare input
|
46 |
+
msgs = [{'role': 'user', 'content': [image, question]}]
|
47 |
+
|
48 |
+
# Generate response
|
49 |
+
res = model.chat(
|
50 |
+
image=image,
|
51 |
+
msgs=msgs,
|
52 |
+
tokenizer=tokenizer,
|
53 |
+
sampling=True,
|
54 |
+
temperature=0.95,
|
55 |
+
stream=True
|
56 |
+
)
|
57 |
+
|
58 |
+
# Process response
|
59 |
+
generated_text = ""
|
60 |
+
for new_text in res:
|
61 |
+
generated_text += new_text
|
62 |
+
|
63 |
+
return jsonify({'response': generated_text})
|
64 |
+
|
65 |
+
if __name__ == '__main__':
|
66 |
+
app.run(debug=True)
|