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Dockerfile

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+# read the doc: https://huggingface.co/docs/hub/spaces-sdks-docker
+# you will also find guides on how best to write your Dockerfile
+
+FROM continuumio/anaconda3:2024.02-1
+
+WORKDIR /code
+
+COPY ./requirements.txt /code/requirements.txt
+
+RUN apt-get update
+
+RUN apt-get install gcc -y
+
+RUN pip install -r /code/requirements.txt
+
+RUN conda install pytorch::faiss-gpu --yes
+
+# Download foldseek
+RUN wget 'https://drive.usercontent.google.com/download?id=1B_9t3n_nlj8Y3Kpc_mMjtMdY0OPYa7Re&export=download&authuser=0' -O /tmp/foldseek
+RUN chmod +x /tmp/foldseek
+
+# Download ProTrek model
+RUN huggingface-cli download westlake-repl/ProTrek_650M_UniRef50 --repo-type model --local-dir /tmp/ProTrek_650M_UniRef50
+
+# Download ProTrek model
+RUN huggingface-cli download westlake-repl/faiss_index_ProTrek_650M_UniRef50  --repo-type dataset  --local-dir /tmp/faiss_index_ProTrek_650M_UniRef50
+
+# Set up a new user named "user" with user ID 1000
+RUN useradd -m -u 1000 user
+
+# Set home to the user's home directory
+ENV HOME=/home/user \
+    PYTHONPATH=$HOME/app \
+    PYTHONUNBUFFERED=1 \
+    GRADIO_ALLOW_FLAGGING=never \
+    GRADIO_NUM_PORTS=1 \
+    GRADIO_SERVER_NAME=0.0.0.0 \
+    GRADIO_THEME=huggingface \
+    SYSTEM=spaces
+
+# Set the working directory to the user's home directory
+WORKDIR $HOME/app
+
+# Copy the current directory contents into the container at $HOME/app setting the owner to the user
+COPY --chown=user . $HOME/app
+
+#COPY . .
+
+CMD ["python", "run.py"]
+
+"MKALIVLGLVLLSVTVQGKVFERCELARTLKRLGMDGYRGIALANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV"
+"MKALIVLGLVLLSVTVQGKVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV"

requirements.txt

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+torch==2.0.1
+gradio==4.16.0
+torchmetrics==0.9.3
+pytorch-lightning==2.1.3
+transformers==4.28.0
+scikit-learn==1.4.0
+tabulate==0.9.0