AgroNT
#1
by
brunoflausino
- opened
Hey, how are you?
I've got some knowledge on bioinformatics and recently started a master's in Data Science. I want to use AgroNT pre-trained model to predict some plant gene expression. I know how to tokenize DNA sequences using AgroNT, but I am not sure if there are some examples on how to predict gene expression. Could you please help me?
Hey @brunoflausino
You can check the notebook example below on how to finetune a Nucleotide Transformer model. You should be able to adapt it to predict any quantity including plant gene expression and the same code should work both with standard NT models or the agroNT model.
Cheers