metadata

base_model: AdaptLLM/medicine-LLM
datasets:
  - Open-Orca/OpenOrca
  - GAIR/lima
  - WizardLM/WizardLM_evol_instruct_V2_196k
  - EleutherAI/pile
inference: false
language:
  - en
license: other
metrics:
  - accuracy
model_creator: AdaptLLM
model_name: Medicine LLM
model_type: llama
pipeline_tag: text-generation
prompt_template: |
  ### User Input:
  {prompt}

  ### Assistant Output:
quantized_by: TheBloke
tags:
  - biology
  - medical

Chat & support: TheBloke's Discord server

Want to contribute? TheBloke's Patreon page

TheBloke's LLM work is generously supported by a grant from andreessen horowitz (a16z)

Medicine LLM - GPTQ

Model creator: AdaptLLM
Original model: Medicine LLM

Description

This repo contains GPTQ model files for AdaptLLM's Medicine LLM.

Multiple GPTQ parameter permutations are provided; see Provided Files below for details of the options provided, their parameters, and the software used to create them.

These files were quantised using hardware kindly provided by Massed Compute.

Repositories available

Prompt template: AdaptLLM

### User Input:
{prompt}

### Assistant Output:

Known compatible clients / servers

GPTQ models are currently supported on Linux (NVidia/AMD) and Windows (NVidia only). macOS users: please use GGUF models.

These GPTQ models are known to work in the following inference servers/webuis.

This may not be a complete list; if you know of others, please let me know!

Provided files, and GPTQ parameters

Multiple quantisation parameters are provided, to allow you to choose the best one for your hardware and requirements.

Each separate quant is in a different branch. See below for instructions on fetching from different branches.

Most GPTQ files are made with AutoGPTQ. Mistral models are currently made with Transformers.

Explanation of GPTQ parameters

Bits: The bit size of the quantised model.
GS: GPTQ group size. Higher numbers use less VRAM, but have lower quantisation accuracy. "None" is the lowest possible value.
Act Order: True or False. Also known as desc_act. True results in better quantisation accuracy. Some GPTQ clients have had issues with models that use Act Order plus Group Size, but this is generally resolved now.
Damp %: A GPTQ parameter that affects how samples are processed for quantisation. 0.01 is default, but 0.1 results in slightly better accuracy.
GPTQ dataset: The calibration dataset used during quantisation. Using a dataset more appropriate to the model's training can improve quantisation accuracy. Note that the GPTQ calibration dataset is not the same as the dataset used to train the model - please refer to the original model repo for details of the training dataset(s).
Sequence Length: The length of the dataset sequences used for quantisation. Ideally this is the same as the model sequence length. For some very long sequence models (16+K), a lower sequence length may have to be used. Note that a lower sequence length does not limit the sequence length of the quantised model. It only impacts the quantisation accuracy on longer inference sequences.
ExLlama Compatibility: Whether this file can be loaded with ExLlama, which currently only supports Llama and Mistral models in 4-bit.

Branch	Bits	GS	Act Order	Damp %	GPTQ Dataset	Seq Len	Size	ExLlama	Desc
main	4	128	Yes	0.1	Medical Medaow WikiDoc	2048	3.90 GB	Yes	4-bit, with Act Order and group size 128g. Uses even less VRAM than 64g, but with slightly lower accuracy.
gptq-4bit-32g-actorder_True	4	32	Yes	0.1	Medical Medaow WikiDoc	2048	4.28 GB	Yes	4-bit, with Act Order and group size 32g. Gives highest possible inference quality, with maximum VRAM usage.
gptq-8bit--1g-actorder_True	8	None	Yes	0.1	Medical Medaow WikiDoc	2048	7.01 GB	No	8-bit, with Act Order. No group size, to lower VRAM requirements.
gptq-8bit-128g-actorder_True	8	128	Yes	0.1	Medical Medaow WikiDoc	2048	7.16 GB	No	8-bit, with group size 128g for higher inference quality and with Act Order for even higher accuracy.
gptq-8bit-32g-actorder_True	8	32	Yes	0.1	Medical Medaow WikiDoc	2048	7.62 GB	No	8-bit, with group size 32g and Act Order for maximum inference quality.
gptq-4bit-64g-actorder_True	4	64	Yes	0.1	Medical Medaow WikiDoc	2048	4.02 GB	Yes	4-bit, with Act Order and group size 64g. Uses less VRAM than 32g, but with slightly lower accuracy.

How to download, including from branches

In text-generation-webui

To download from the main branch, enter TheBloke/medicine-LLM-GPTQ in the "Download model" box.

To download from another branch, add :branchname to the end of the download name, eg TheBloke/medicine-LLM-GPTQ:gptq-4bit-32g-actorder_True

From the command line

I recommend using the huggingface-hub Python library:

pip3 install huggingface-hub

To download the main branch to a folder called medicine-LLM-GPTQ:

mkdir medicine-LLM-GPTQ
huggingface-cli download TheBloke/medicine-LLM-GPTQ --local-dir medicine-LLM-GPTQ --local-dir-use-symlinks False

To download from a different branch, add the --revision parameter:

mkdir medicine-LLM-GPTQ
huggingface-cli download TheBloke/medicine-LLM-GPTQ --revision gptq-4bit-32g-actorder_True --local-dir medicine-LLM-GPTQ --local-dir-use-symlinks False

More advanced huggingface-cli download usage

If you remove the --local-dir-use-symlinks False parameter, the files will instead be stored in the central Hugging Face cache directory (default location on Linux is: ~/.cache/huggingface), and symlinks will be added to the specified --local-dir, pointing to their real location in the cache. This allows for interrupted downloads to be resumed, and allows you to quickly clone the repo to multiple places on disk without triggering a download again. The downside, and the reason why I don't list that as the default option, is that the files are then hidden away in a cache folder and it's harder to know where your disk space is being used, and to clear it up if/when you want to remove a download model.

The cache location can be changed with the HF_HOME environment variable, and/or the --cache-dir parameter to huggingface-cli.

For more documentation on downloading with huggingface-cli, please see: HF -> Hub Python Library -> Download files -> Download from the CLI.

To accelerate downloads on fast connections (1Gbit/s or higher), install hf_transfer:

pip3 install hf_transfer

And set environment variable HF_HUB_ENABLE_HF_TRANSFER to 1:

mkdir medicine-LLM-GPTQ
HF_HUB_ENABLE_HF_TRANSFER=1 huggingface-cli download TheBloke/medicine-LLM-GPTQ --local-dir medicine-LLM-GPTQ --local-dir-use-symlinks False

Windows Command Line users: You can set the environment variable by running set HF_HUB_ENABLE_HF_TRANSFER=1 before the download command.

With `git` (not recommended)

To clone a specific branch with git, use a command like this:

git clone --single-branch --branch gptq-4bit-32g-actorder_True https://huggingface.co/TheBloke/medicine-LLM-GPTQ

Note that using Git with HF repos is strongly discouraged. It will be much slower than using huggingface-hub, and will use twice as much disk space as it has to store the model files twice (it stores every byte both in the intended target folder, and again in the .git folder as a blob.)

How to easily download and use this model in text-generation-webui

Please make sure you're using the latest version of text-generation-webui.

It is strongly recommended to use the text-generation-webui one-click-installers unless you're sure you know how to make a manual install.

Click the Model tab.
Under Download custom model or LoRA, enter TheBloke/medicine-LLM-GPTQ.
- To download from a specific branch, enter for example TheBloke/medicine-LLM-GPTQ:gptq-4bit-32g-actorder_True
- see Provided Files above for the list of branches for each option.
Click Download.
The model will start downloading. Once it's finished it will say "Done".
In the top left, click the refresh icon next to Model.
In the Model dropdown, choose the model you just downloaded: medicine-LLM-GPTQ
The model will automatically load, and is now ready for use!
If you want any custom settings, set them and then click Save settings for this model followed by Reload the Model in the top right.
- Note that you do not need to and should not set manual GPTQ parameters any more. These are set automatically from the file quantize_config.json.
Once you're ready, click the Text Generation tab and enter a prompt to get started!

Serving this model from Text Generation Inference (TGI)

It's recommended to use TGI version 1.1.0 or later. The official Docker container is: ghcr.io/huggingface/text-generation-inference:1.1.0

Example Docker parameters:

--model-id TheBloke/medicine-LLM-GPTQ --port 3000 --quantize gptq --max-input-length 3696 --max-total-tokens 4096 --max-batch-prefill-tokens 4096

Example Python code for interfacing with TGI (requires huggingface-hub 0.17.0 or later):

pip3 install huggingface-hub

from huggingface_hub import InferenceClient

endpoint_url = "https://your-endpoint-url-here"

prompt = "Tell me about AI"
prompt_template=f'''### User Input:
{prompt}

### Assistant Output:
'''

client = InferenceClient(endpoint_url)
response = client.text_generation(
  prompt_template,
  max_new_tokens=128,
  do_sample=True,
  temperature=0.7,
  top_p=0.95,
  top_k=40,
  repetition_penalty=1.1
)

print(f"Model output: {response}")

Python code example: inference from this GPTQ model

Install the necessary packages

Requires: Transformers 4.33.0 or later, Optimum 1.12.0 or later, and AutoGPTQ 0.4.2 or later.

pip3 install --upgrade transformers optimum
# If using PyTorch 2.1 + CUDA 12.x:
pip3 install --upgrade auto-gptq
# or, if using PyTorch 2.1 + CUDA 11.x:
pip3 install --upgrade auto-gptq --extra-index-url https://huggingface.github.io/autogptq-index/whl/cu118/

If you are using PyTorch 2.0, you will need to install AutoGPTQ from source. Likewise if you have problems with the pre-built wheels, you should try building from source:

pip3 uninstall -y auto-gptq
git clone https://github.com/PanQiWei/AutoGPTQ
cd AutoGPTQ
git checkout v0.5.1
pip3 install .

Example Python code

from transformers import AutoModelForCausalLM, AutoTokenizer, pipeline

model_name_or_path = "TheBloke/medicine-LLM-GPTQ"
# To use a different branch, change revision
# For example: revision="gptq-4bit-32g-actorder_True"
model = AutoModelForCausalLM.from_pretrained(model_name_or_path,
                                             device_map="auto",
                                             trust_remote_code=False,
                                             revision="main")

tokenizer = AutoTokenizer.from_pretrained(model_name_or_path, use_fast=True)

prompt = "Write a story about llamas"
system_message = "You are a story writing assistant"
prompt_template=f'''### User Input:
{prompt}

### Assistant Output:
'''

print("\n\n*** Generate:")

input_ids = tokenizer(prompt_template, return_tensors='pt').input_ids.cuda()
output = model.generate(inputs=input_ids, temperature=0.7, do_sample=True, top_p=0.95, top_k=40, max_new_tokens=512)
print(tokenizer.decode(output[0]))

# Inference can also be done using transformers' pipeline

print("*** Pipeline:")
pipe = pipeline(
    "text-generation",
    model=model,
    tokenizer=tokenizer,
    max_new_tokens=512,
    do_sample=True,
    temperature=0.7,
    top_p=0.95,
    top_k=40,
    repetition_penalty=1.1
)

print(pipe(prompt_template)[0]['generated_text'])

Compatibility

The files provided are tested to work with Transformers. For non-Mistral models, AutoGPTQ can also be used directly.

ExLlama is compatible with Llama architecture models (including Mistral, Yi, DeepSeek, SOLAR, etc) in 4-bit. Please see the Provided Files table above for per-file compatibility.

For a list of clients/servers, please see "Known compatible clients / servers", above.

Discord

For further support, and discussions on these models and AI in general, join us at:

TheBloke AI's Discord server

Thanks, and how to contribute

Thanks to the chirper.ai team!

Thanks to Clay from gpus.llm-utils.org!

I've had a lot of people ask if they can contribute. I enjoy providing models and helping people, and would love to be able to spend even more time doing it, as well as expanding into new projects like fine tuning/training.

If you're able and willing to contribute it will be most gratefully received and will help me to keep providing more models, and to start work on new AI projects.

Donaters will get priority support on any and all AI/LLM/model questions and requests, access to a private Discord room, plus other benefits.

Patreon: https://patreon.com/TheBlokeAI
Ko-Fi: https://ko-fi.com/TheBlokeAI

Special thanks to: Aemon Algiz.

Patreon special mentions: Michael Levine, 阿明, Trailburnt, Nikolai Manek, John Detwiler, Randy H, Will Dee, Sebastain Graf, NimbleBox.ai, Eugene Pentland, Emad Mostaque, Ai Maven, Jim Angel, Jeff Scroggin, Michael Davis, Manuel Alberto Morcote, Stephen Murray, Robert, Justin Joy, Luke @flexchar, Brandon Frisco, Elijah Stavena, S_X, Dan Guido, Undi ., Komninos Chatzipapas, Shadi, theTransient, Lone Striker, Raven Klaugh, jjj, Cap'n Zoog, Michel-Marie MAUDET (LINAGORA), Matthew Berman, David, Fen Risland, Omer Bin Jawed, Luke Pendergrass, Kalila, OG, Erik Bjäreholt, Rooh Singh, Joseph William Delisle, Dan Lewis, TL, John Villwock, AzureBlack, Brad, Pedro Madruga, Caitlyn Gatomon, K, jinyuan sun, Mano Prime, Alex, Jeffrey Morgan, Alicia Loh, Illia Dulskyi, Chadd, transmissions 11, fincy, Rainer Wilmers, ReadyPlayerEmma, knownsqashed, Mandus, biorpg, Deo Leter, Brandon Phillips, SuperWojo, Sean Connelly, Iucharbius, Jack West, Harry Royden McLaughlin, Nicholas, terasurfer, Vitor Caleffi, Duane Dunston, Johann-Peter Hartmann, David Ziegler, Olakabola, Ken Nordquist, Trenton Dambrowitz, Tom X Nguyen, Vadim, Ajan Kanaga, Leonard Tan, Clay Pascal, Alexandros Triantafyllidis, JM33133, Xule, vamX, ya boyyy, subjectnull, Talal Aujan, Alps Aficionado, wassieverse, Ari Malik, James Bentley, Woland, Spencer Kim, Michael Dempsey, Fred von Graf, Elle, zynix, William Richards, Stanislav Ovsiannikov, Edmond Seymore, Jonathan Leane, Martin Kemka, usrbinkat, Enrico Ros

Thank you to all my generous patrons and donaters!

And thank you again to a16z for their generous grant.

Original model card: AdaptLLM's Medicine LLM

Adapt (Large) Language Models to Domains

This repo contains the domain-specific base model developed from LLaMA-1-7B, using the method in our paper Adapting Large Language Models via Reading Comprehension.

We explore continued pre-training on domain-specific corpora for large language models. While this approach enriches LLMs with domain knowledge, it significantly hurts their prompting ability for question answering. Inspired by human learning via reading comprehension, we propose a simple method to transform large-scale pre-training corpora into reading comprehension texts, consistently improving prompting performance across tasks in biomedicine, finance, and law domains. Our 7B model competes with much larger domain-specific models like BloombergGPT-50B.

🤗 We are currently working hard on developing models across different domains, scales and architectures! Please stay tuned! 🤗

**************************** Updates ****************************

12/19: Released our 13B base models developed from LLaMA-1-13B.
12/8: Released our chat models developed from LLaMA-2-Chat-7B.
9/18: Released our paper, code, data, and base models developed from LLaMA-1-7B.

Domain-Specific LLaMA-1

LLaMA-1-7B

In our paper, we develop three domain-specific models from LLaMA-1-7B, which are also available in Huggingface: Biomedicine-LLM, Finance-LLM and Law-LLM, the performances of our AdaptLLM compared to other domain-specific LLMs are:

LLaMA-1-13B

Moreover, we scale up our base model to LLaMA-1-13B to see if our method is similarly effective for larger-scale models, and the results are consistently positive too: Biomedicine-LLM-13B, Finance-LLM-13B and Law-LLM-13B.

Domain-Specific LLaMA-2-Chat

Our method is also effective for aligned models! LLaMA-2-Chat requires a specific data format, and our reading comprehension can perfectly fit the data format by transforming the reading comprehension into a multi-turn conversation. We have also open-sourced chat models in different domains: Biomedicine-Chat, Finance-Chat and Law-Chat

For example, to chat with the biomedicine base model (🤗we highly recommend switching to the chat model for better response quality!):

from transformers import AutoModelForCausalLM, AutoTokenizer

model = AutoModelForCausalLM.from_pretrained("AdaptLLM/medicine-LLM")
tokenizer = AutoTokenizer.from_pretrained("AdaptLLM/medicine-LLM", use_fast=False)

# Put your input here:
user_input = '''Question: Which of the following is an example of monosomy?
Options:
- 46,XX
- 47,XXX
- 69,XYY
- 45,X

Please provide your choice first and then provide explanations if possible.'''

# Simply use your input as the prompt for base models
prompt = user_input

inputs = tokenizer(prompt, return_tensors="pt", add_special_tokens=False).input_ids.to(model.device)
outputs = model.generate(input_ids=inputs, max_length=2048)[0]

answer_start = int(inputs.shape[-1])
pred = tokenizer.decode(outputs[answer_start:], skip_special_tokens=True)

print(f'### User Input:\n{user_input}\n\n### Assistant Output:\n{pred}')

Domain-Specific Tasks

To easily reproduce our results, we have uploaded the filled-in zero/few-shot input instructions and output completions of each domain-specific task: biomedicine-tasks, finance-tasks, and law-tasks.

Note: those filled-in instructions are specifically tailored for models before alignment and do NOT fit for the specific data format required for chat models.

Citation

If you find our work helpful, please cite us:

@article{adaptllm,
  title        = {Adapting Large Language Models via Reading Comprehension},
  author       = {Daixuan Cheng and Shaohan Huang and Furu Wei},
  journal      = {CoRR},
  volume       = {abs/2309.09530},
  year         = {2023}
}