PeptideGPT
Collection
This collection hosts all the PeptideGPT models for four properties of proteins - hemolytic, non-hemolytic, non-fouling and solubility.
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4 items
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Updated
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3
This model is a fine-tuned version of nferruz/ProtGPT2 on an unknown dataset. It achieves the following results on the evaluation set:
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More information needed
More information needed
The following hyperparameters were used during training:
Training Loss | Epoch | Step | Validation Loss | Accuracy |
---|---|---|---|---|
12.1762 | 1.0 | 9 | 11.8181 | 0.0029 |
11.6538 | 2.0 | 18 | 11.3468 | 0.0010 |
11.2876 | 3.0 | 27 | 10.9127 | 0.0010 |
10.8664 | 4.0 | 36 | 10.5162 | 0.0010 |
10.6184 | 5.0 | 45 | 10.1817 | 0.0020 |
10.3132 | 6.0 | 54 | 9.8765 | 0.0010 |
9.9087 | 7.0 | 63 | 9.6073 | 0.0010 |
9.6953 | 8.0 | 72 | 9.3244 | 0.0 |
9.3741 | 9.0 | 81 | 9.0318 | 0.0 |
9.2045 | 10.0 | 90 | 8.7461 | 0.0 |
8.9079 | 11.0 | 99 | 8.4755 | 0.0020 |
8.7047 | 12.0 | 108 | 8.2222 | 0.0117 |
8.4622 | 13.0 | 117 | 7.9951 | 0.0313 |
8.2649 | 14.0 | 126 | 7.8052 | 0.0655 |
8.043 | 15.0 | 135 | 7.6495 | 0.1065 |
7.9092 | 16.0 | 144 | 7.5160 | 0.1378 |
7.7103 | 17.0 | 153 | 7.3881 | 0.1691 |
7.5701 | 18.0 | 162 | 7.2693 | 0.1818 |
7.4483 | 19.0 | 171 | 7.1544 | 0.1994 |
7.314 | 20.0 | 180 | 7.0469 | 0.2160 |
7.2101 | 21.0 | 189 | 6.9440 | 0.2326 |
7.1026 | 22.0 | 198 | 6.8542 | 0.2366 |
6.9954 | 23.0 | 207 | 6.7684 | 0.2483 |
6.9206 | 24.0 | 216 | 6.6851 | 0.2512 |
6.8588 | 25.0 | 225 | 6.6217 | 0.2561 |
6.7975 | 26.0 | 234 | 6.5621 | 0.2590 |
6.7355 | 27.0 | 243 | 6.5111 | 0.2610 |
6.6928 | 28.0 | 252 | 6.4630 | 0.2639 |
6.6483 | 29.0 | 261 | 6.4137 | 0.2698 |
6.6169 | 30.0 | 270 | 6.3675 | 0.2717 |
6.5498 | 31.0 | 279 | 6.3292 | 0.2747 |
6.5385 | 32.0 | 288 | 6.2967 | 0.2766 |
6.5111 | 33.0 | 297 | 6.2592 | 0.2786 |
6.4748 | 34.0 | 306 | 6.2316 | 0.2815 |
6.4575 | 35.0 | 315 | 6.2096 | 0.2835 |
6.4251 | 36.0 | 324 | 6.1847 | 0.2845 |
6.4096 | 37.0 | 333 | 6.1613 | 0.2854 |
6.3741 | 38.0 | 342 | 6.1402 | 0.2854 |
6.3645 | 39.0 | 351 | 6.1285 | 0.2874 |
6.3511 | 40.0 | 360 | 6.1134 | 0.2874 |
6.3254 | 41.0 | 369 | 6.0957 | 0.2874 |
6.3077 | 42.0 | 378 | 6.0818 | 0.2874 |
6.301 | 43.0 | 387 | 6.0688 | 0.2874 |
6.2846 | 44.0 | 396 | 6.0511 | 0.2884 |
6.2739 | 45.0 | 405 | 6.0398 | 0.2893 |
6.2569 | 46.0 | 414 | 6.0301 | 0.2913 |
6.258 | 47.0 | 423 | 6.0176 | 0.2913 |
6.2273 | 48.0 | 432 | 6.0037 | 0.2933 |
6.2256 | 49.0 | 441 | 5.9962 | 0.2933 |
6.2065 | 50.0 | 450 | 5.9869 | 0.2933 |
6.1991 | 51.0 | 459 | 5.9756 | 0.2933 |
6.1895 | 52.0 | 468 | 5.9682 | 0.2942 |
6.1763 | 53.0 | 477 | 5.9611 | 0.2942 |
6.1734 | 54.0 | 486 | 5.9535 | 0.2942 |
6.1702 | 55.0 | 495 | 5.9457 | 0.2942 |
6.1556 | 56.0 | 504 | 5.9376 | 0.2952 |
6.1481 | 57.0 | 513 | 5.9306 | 0.2952 |
6.1425 | 58.0 | 522 | 5.9222 | 0.2942 |
6.1416 | 59.0 | 531 | 5.9170 | 0.2942 |
6.1328 | 60.0 | 540 | 5.9142 | 0.2942 |
6.1176 | 61.0 | 549 | 5.9064 | 0.2942 |
6.1091 | 62.0 | 558 | 5.9010 | 0.2942 |
6.104 | 63.0 | 567 | 5.8961 | 0.2942 |
6.0986 | 64.0 | 576 | 5.8915 | 0.2942 |
6.089 | 65.0 | 585 | 5.8854 | 0.2952 |
6.0734 | 66.0 | 594 | 5.8810 | 0.2942 |
6.0905 | 67.0 | 603 | 5.8762 | 0.2942 |
6.0701 | 68.0 | 612 | 5.8737 | 0.2962 |
6.0595 | 69.0 | 621 | 5.8694 | 0.2962 |
6.0616 | 70.0 | 630 | 5.8661 | 0.2962 |
6.0512 | 71.0 | 639 | 5.8635 | 0.2962 |
6.0415 | 72.0 | 648 | 5.8613 | 0.2962 |
6.0391 | 73.0 | 657 | 5.8583 | 0.2962 |
6.032 | 74.0 | 666 | 5.8548 | 0.2962 |
6.0317 | 75.0 | 675 | 5.8511 | 0.2962 |
6.0343 | 76.0 | 684 | 5.8479 | 0.2972 |
6.0156 | 77.0 | 693 | 5.8435 | 0.2981 |
6.0167 | 78.0 | 702 | 5.8403 | 0.2981 |
6.0052 | 79.0 | 711 | 5.8364 | 0.2981 |
6.0057 | 80.0 | 720 | 5.8336 | 0.2981 |
6.0001 | 81.0 | 729 | 5.8319 | 0.2981 |
6.001 | 82.0 | 738 | 5.8288 | 0.2991 |
5.9905 | 83.0 | 747 | 5.8266 | 0.3011 |
5.9906 | 84.0 | 756 | 5.8242 | 0.3021 |
5.9862 | 85.0 | 765 | 5.8216 | 0.3021 |
5.9829 | 86.0 | 774 | 5.8191 | 0.3050 |
5.9725 | 87.0 | 783 | 5.8173 | 0.3069 |
5.9795 | 88.0 | 792 | 5.8142 | 0.3089 |
5.9695 | 89.0 | 801 | 5.8115 | 0.3069 |
5.9607 | 90.0 | 810 | 5.8081 | 0.3089 |
5.9605 | 91.0 | 819 | 5.8057 | 0.3089 |
5.9591 | 92.0 | 828 | 5.8037 | 0.3079 |
5.9481 | 93.0 | 837 | 5.8011 | 0.3069 |
5.9501 | 94.0 | 846 | 5.7983 | 0.3079 |
5.948 | 95.0 | 855 | 5.7943 | 0.3089 |
5.9488 | 96.0 | 864 | 5.7907 | 0.3109 |
5.9449 | 97.0 | 873 | 5.7888 | 0.3118 |
5.9357 | 98.0 | 882 | 5.7872 | 0.3099 |
5.9363 | 99.0 | 891 | 5.7834 | 0.3079 |
5.9368 | 100.0 | 900 | 5.7817 | 0.3099 |
5.9215 | 101.0 | 909 | 5.7791 | 0.3099 |
5.9264 | 102.0 | 918 | 5.7749 | 0.3099 |
5.9126 | 103.0 | 927 | 5.7725 | 0.3089 |
5.9163 | 104.0 | 936 | 5.7698 | 0.3069 |
5.9183 | 105.0 | 945 | 5.7673 | 0.3069 |
5.9154 | 106.0 | 954 | 5.7639 | 0.3089 |
5.9149 | 107.0 | 963 | 5.7612 | 0.3079 |
5.9082 | 108.0 | 972 | 5.7579 | 0.3089 |
5.9051 | 109.0 | 981 | 5.7559 | 0.3079 |
5.908 | 110.0 | 990 | 5.7531 | 0.3079 |
5.901 | 111.0 | 999 | 5.7502 | 0.3079 |
5.9064 | 112.0 | 1008 | 5.7484 | 0.3089 |
5.895 | 113.0 | 1017 | 5.7460 | 0.3099 |
5.894 | 114.0 | 1026 | 5.7438 | 0.3089 |
5.8809 | 115.0 | 1035 | 5.7419 | 0.3079 |
5.8893 | 116.0 | 1044 | 5.7419 | 0.3079 |
5.8874 | 117.0 | 1053 | 5.7392 | 0.3069 |
5.8798 | 118.0 | 1062 | 5.7349 | 0.3089 |
5.8826 | 119.0 | 1071 | 5.7324 | 0.3099 |
5.8736 | 120.0 | 1080 | 5.7299 | 0.3099 |
5.8751 | 121.0 | 1089 | 5.7270 | 0.3099 |
5.8699 | 122.0 | 1098 | 5.7253 | 0.3099 |
5.8802 | 123.0 | 1107 | 5.7231 | 0.3099 |
5.8707 | 124.0 | 1116 | 5.7240 | 0.3099 |
5.8653 | 125.0 | 1125 | 5.7232 | 0.3109 |
5.8693 | 126.0 | 1134 | 5.7180 | 0.3109 |
5.8662 | 127.0 | 1143 | 5.7147 | 0.3109 |
5.8539 | 128.0 | 1152 | 5.7132 | 0.3099 |
5.8611 | 129.0 | 1161 | 5.7127 | 0.3099 |
5.8495 | 130.0 | 1170 | 5.7135 | 0.3079 |
5.8602 | 131.0 | 1179 | 5.7111 | 0.3089 |
5.8512 | 132.0 | 1188 | 5.7077 | 0.3109 |
5.8493 | 133.0 | 1197 | 5.7050 | 0.3109 |
5.8477 | 134.0 | 1206 | 5.7041 | 0.3099 |
5.8464 | 135.0 | 1215 | 5.7042 | 0.3089 |
5.8459 | 136.0 | 1224 | 5.7023 | 0.3099 |
5.8475 | 137.0 | 1233 | 5.7000 | 0.3099 |
5.8384 | 138.0 | 1242 | 5.6982 | 0.3099 |
5.8453 | 139.0 | 1251 | 5.6976 | 0.3089 |
5.8441 | 140.0 | 1260 | 5.6973 | 0.3089 |
5.838 | 141.0 | 1269 | 5.6971 | 0.3079 |
5.8463 | 142.0 | 1278 | 5.6950 | 0.3099 |
5.8385 | 143.0 | 1287 | 5.6921 | 0.3099 |
5.8354 | 144.0 | 1296 | 5.6909 | 0.3099 |
5.8283 | 145.0 | 1305 | 5.6908 | 0.3079 |
5.8363 | 146.0 | 1314 | 5.6902 | 0.3079 |
5.8433 | 147.0 | 1323 | 5.6890 | 0.3079 |
5.8302 | 148.0 | 1332 | 5.6890 | 0.3079 |
5.8276 | 149.0 | 1341 | 5.6881 | 0.3089 |
5.8366 | 150.0 | 1350 | 5.6864 | 0.3089 |
5.826 | 151.0 | 1359 | 5.6852 | 0.3099 |
5.8293 | 152.0 | 1368 | 5.6844 | 0.3099 |
5.8278 | 153.0 | 1377 | 5.6834 | 0.3099 |
5.8239 | 154.0 | 1386 | 5.6830 | 0.3089 |
5.8262 | 155.0 | 1395 | 5.6818 | 0.3089 |
5.8253 | 156.0 | 1404 | 5.6808 | 0.3099 |
5.8169 | 157.0 | 1413 | 5.6793 | 0.3109 |
5.8201 | 158.0 | 1422 | 5.6795 | 0.3109 |
5.8077 | 159.0 | 1431 | 5.6799 | 0.3099 |
5.8222 | 160.0 | 1440 | 5.6789 | 0.3099 |
5.8191 | 161.0 | 1449 | 5.6778 | 0.3099 |
5.83 | 162.0 | 1458 | 5.6768 | 0.3099 |
5.8183 | 163.0 | 1467 | 5.6757 | 0.3109 |
5.8124 | 164.0 | 1476 | 5.6747 | 0.3109 |
5.8119 | 165.0 | 1485 | 5.6745 | 0.3109 |
5.821 | 166.0 | 1494 | 5.6744 | 0.3099 |
5.807 | 167.0 | 1503 | 5.6737 | 0.3099 |
5.8177 | 168.0 | 1512 | 5.6725 | 0.3109 |
5.8046 | 169.0 | 1521 | 5.6710 | 0.3109 |
5.8093 | 170.0 | 1530 | 5.6708 | 0.3109 |
5.8145 | 171.0 | 1539 | 5.6710 | 0.3109 |
5.803 | 172.0 | 1548 | 5.6704 | 0.3109 |
5.8038 | 173.0 | 1557 | 5.6697 | 0.3109 |
5.807 | 174.0 | 1566 | 5.6689 | 0.3109 |
5.7974 | 175.0 | 1575 | 5.6683 | 0.3109 |
5.8089 | 176.0 | 1584 | 5.6688 | 0.3109 |
5.8067 | 177.0 | 1593 | 5.6693 | 0.3109 |
5.8092 | 178.0 | 1602 | 5.6695 | 0.3109 |
5.8047 | 179.0 | 1611 | 5.6687 | 0.3099 |
5.8007 | 180.0 | 1620 | 5.6679 | 0.3099 |
5.8041 | 181.0 | 1629 | 5.6672 | 0.3099 |
5.8072 | 182.0 | 1638 | 5.6667 | 0.3099 |
5.8093 | 183.0 | 1647 | 5.6662 | 0.3099 |
5.7948 | 184.0 | 1656 | 5.6658 | 0.3099 |
5.7968 | 185.0 | 1665 | 5.6656 | 0.3099 |
5.8033 | 186.0 | 1674 | 5.6653 | 0.3099 |
5.8031 | 187.0 | 1683 | 5.6651 | 0.3099 |
5.7953 | 188.0 | 1692 | 5.6650 | 0.3099 |
5.8085 | 189.0 | 1701 | 5.6647 | 0.3099 |
5.8021 | 190.0 | 1710 | 5.6646 | 0.3099 |
5.7995 | 191.0 | 1719 | 5.6643 | 0.3099 |
5.8057 | 192.0 | 1728 | 5.6642 | 0.3099 |
5.7989 | 193.0 | 1737 | 5.6642 | 0.3099 |
5.7977 | 194.0 | 1746 | 5.6642 | 0.3099 |
5.8009 | 195.0 | 1755 | 5.6644 | 0.3099 |
5.7988 | 196.0 | 1764 | 5.6645 | 0.3099 |
5.8016 | 197.0 | 1773 | 5.6645 | 0.3099 |
5.7929 | 198.0 | 1782 | 5.6645 | 0.3099 |
5.7973 | 199.0 | 1791 | 5.6645 | 0.3099 |
5.8022 | 200.0 | 1800 | 5.6645 | 0.3099 |
Base model
nferruz/ProtGPT2