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--- |
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language: |
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- en |
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tags: |
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- pubmed |
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- feature-extraction |
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- sentence-similarity |
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datasets: |
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- biu-nlp/abstract-sim-pubmed |
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--- |
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A model for mapping abstract sentence descriptions to sentences that fit the descriptions. Trained on Pubmed sentences. Use ```load_finetuned_model``` to load the query and sentence encoder, and ```encode_batch()``` to encode a sentence with the model. |
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```python |
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from transformers import AutoTokenizer, AutoModel |
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import torch |
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def load_finetuned_model(): |
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sentence_encoder = AutoModel.from_pretrained("biu-nlp/abstract-sim-sentence-pubmed") |
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query_encoder = AutoModel.from_pretrained("biu-nlp/abstract-sim-query-pubmed") |
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tokenizer = AutoTokenizer.from_pretrained("biu-nlp/abstract-sim-sentence-pubmed") |
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return tokenizer, query_encoder, sentence_encoder |
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def encode_batch(model, tokenizer, sentences, device): |
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input_ids = tokenizer(sentences, padding=True, max_length=512, truncation=True, return_tensors="pt", |
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add_special_tokens=True).to(device) |
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features = model(**input_ids)[0] |
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features = torch.sum(features[:,1:,:] * input_ids["attention_mask"][:,1:].unsqueeze(-1), dim=1) / torch.clamp(torch.sum(input_ids["attention_mask"][:,1:], dim=1, keepdims=True), min=1e-9) |
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return features |
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``` |
