Download error

#4
by vsubasri - opened

I am interesting in using this dataset but encountered an error as follows when downloading InstaDeepAI/multi_species_genomes:

FileNotFoundError: Couldn't find file at https://ftp.ncbi.nlm.nih.gov/genomes/refseq/bacteria/Raoultella_electrica/latest_assembly_versions/GCF_006711645.1_ASM671164v1/GCF_006711645.1_ASM671164v1_genomic.fna.gz

Any assistance in resolving this would be greatly appreciated

InstaDeep Ltd org

Hi @vsubasri

According to the file cataloging the updates done in the new RefSeq release :

The following are organism name updates (current_tax_id|current_name|previous_tax_id|previous_name):
[...]
1259973|Klebsiella electrica|1259973|Raoultella electrica
[...]

So the file can now be found at

https://ftp.ncbi.nlm.nih.gov/genomes/refseq/bacteria/Klebsiella_electrica/latest_assembly_versions/GCF_006711645.1_ASM671164v1/GCF_006711645.1_ASM671164v1_genomic.fna.gz

I've created a pull request to make this change.

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