Datasets:

ReaKal
/

hg38.trf.short

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train · 1k rows

chromosome stringclasses 1 value	start_position int64 10k 6.9M	end_position int64 10.5k 6.9M	computational_method stringclasses 1 value	period_size int64 1 12	copy_number float64 2.1 884	consensus_size int64 1 14	percent_matches int64 61 100	percent_indels int64 0 33	score int64 50 1.2k	A int64 0 100	C int64 0 81	G int64 0 84	T int64 0 100	entropy_0-2 float64 0 2	sequence stringlengths 1 14
chr1	10,000	10,468	trf	6	77.2	6	95	3	789	33	51	0	15	1.43	TAACCC
chr1	30,862	30,959	trf	2	47.5	2	75	8	79	5	42	1	51	1.31	TC
chr1	44,835	44,876	trf	4	10	4	94	5	73	73	0	0	26	0.84	AAAT
chr1	50,481	50,513	trf	2	16	2	100	0	64	0	0	50	50	1	GT
chr1	54,712	54,817	trf	4	25.8	4	87	7	149	0	26	0	72	0.91	TTTC
chr1	66,159	66,629	trf	7	68.1	7	72	18	278	49	0	0	49	1.08	TTATATA
chr1	66,160	66,630	trf	2	262	2	71	21	339	49	0	0	49	1.08	TA
chr1	66,204	66,632	trf	5	87.4	5	73	16	202	50	0	0	48	1.06	ATATA
chr1	72,124	72,164	trf	12	3.3	12	89	0	62	50	20	0	30	1.49	ATATATACATAC
chr1	72,128	72,163	trf	4	8.8	4	87	0	52	51	22	0	25	1.48	ATAC
chr1	83,791	84,041	trf	4	64.8	4	86	11	335	72	0	28	0	0.86	AAAG
chr1	98,999	99,042	trf	4	10.8	4	100	0	86	23	0	0	76	0.78	TTTA
chr1	99,046	99,116	trf	1	70	1	76	0	68	0	11	0	88	0.51	T
chr1	99,047	99,115	trf	12	5.9	11	83	16	77	0	11	0	88	0.52	TTTTTTTTTTC
chr1	104,160	104,196	trf	2	18	2	94	0	63	50	47	0	2	1.15	AC
chr1	108,444	108,469	trf	11	2.3	11	100	0	50	28	16	32	24	1.96	GAGGATCACTT
chr1	109,564	109,614	trf	2	25	2	91	0	82	2	2	48	48	1.24	TG
chr1	120,967	121,135	trf	7	23.1	7	77	17	150	41	3	1	53	1.29	TTATATA
chr1	120,968	121,135	trf	11	15.3	11	76	13	159	41	3	1	53	1.29	TATATATTATA
chr1	120,968	121,135	trf	9	17.6	9	74	21	137	41	3	1	53	1.29	TATATATTA
chr1	134,065	134,094	trf	1	29	1	100	0	58	0	0	0	100	0	T
chr1	144,527	144,576	trf	2	24.5	2	100	0	98	48	0	0	51	1	TA
chr1	147,433	147,475	trf	3	14	3	89	0	66	71	28	0	0	0.86	CAA
chr1	158,997	159,031	trf	2	17	2	93	0	59	52	47	0	0	1	AC
chr1	162,180	162,275	trf	4	23	4	72	10	66	51	0	48	0	1	AAGG
chr1	162,196	162,325	trf	8	16.1	8	76	13	97	45	0	54	0	0.99	AAGGAGGG
chr1	162,287	162,344	trf	4	14.2	4	84	0	69	33	0	66	0	0.92	GAGG
chr1	174,902	174,933	trf	1	31	1	100	0	62	100	0	0	0	0	A
chr1	176,202	176,231	trf	5	5.8	5	100	0	58	82	17	0	0	0.66	AAAAC
chr1	180,088	180,998	trf	6	146.8	6	82	9	899	31	48	1	17	1.58	ACCCTA
chr1	201,376	201,479	trf	2	50.5	2	79	7	100	4	42	0	52	1.22	TC
chr1	271,385	271,410	trf	5	5	5	100	0	50	0	20	0	80	0.72	CTTTT
chr1	271,386	271,429	trf	10	4.2	10	83	13	52	0	11	0	88	0.52	TTTTCTTTTT
chr1	275,583	275,614	trf	4	7.8	4	100	0	62	22	0	0	77	0.77	TTTA
chr1	275,618	275,679	trf	1	61	1	73	0	50	0	13	0	86	0.56	T
chr1	275,619	275,677	trf	12	4.9	11	80	19	64	0	13	0	86	0.58	TTTTTTTTTTC
chr1	280,726	280,760	trf	2	17	2	93	0	59	50	47	0	2	1.16	AC
chr1	285,008	285,033	trf	11	2.3	11	100	0	50	28	16	32	24	1.96	GAGGATCACTT
chr1	286,134	286,178	trf	2	22	2	85	0	61	4	2	45	47	1.35	TG
chr1	297,538	297,674	trf	2	76.5	2	68	22	90	41	3	1	52	1.28	TA
chr1	297,546	297,674	trf	7	17.4	7	75	16	109	42	3	1	53	1.26	TATTATA
chr1	360,788	360,816	trf	12	2.3	12	100	0	56	28	25	21	25	1.99	ATCAGCCTGGTA
chr1	367,998	368,050	trf	10	4.6	11	77	17	54	44	38	1	15	1.58	TACACACATCA
chr1	370,612	370,656	trf	4	9.8	5	88	11	53	0	15	0	84	0.63	TTTTC
chr1	370,612	370,656	trf	9	4.4	9	79	20	52	0	15	0	84	0.63	TTTTCTTTT
chr1	371,008	371,037	trf	5	5.8	5	100	0	58	0	0	17	82	0.66	TTTTG
chr1	371,274	371,314	trf	2	20	2	84	0	53	5	2	45	47	1.38	TG
chr1	373,984	374,164	trf	12	14.8	12	71	9	105	4	57	0	37	1.23	TCTCCTTTCTCC
chr1	393,781	393,807	trf	2	13	2	100	0	52	0	0	50	50	1	GT
chr1	394,541	394,646	trf	4	26.2	4	84	0	75	37	2	60	0	1.12	AGGG
chr1	396,748	396,776	trf	1	28	1	100	0	56	0	0	0	100	0	T
chr1	396,901	396,941	trf	2	20	2	100	0	80	0	0	50	50	1	GT
chr1	409,436	409,471	trf	4	8.8	4	87	0	52	22	2	2	71	1.13	TTTA
chr1	409,468	409,510	trf	12	3.4	12	81	15	50	0	19	0	80	0.7	TTTTTCCTTCTT
chr1	414,629	414,675	trf	2	23	2	100	0	92	50	50	0	0	1	AC
chr1	417,892	418,051	trf	4	39.2	4	85	12	218	72	0	27	0	0.84	AGAA
chr1	432,155	432,300	trf	2	73.5	2	74	5	80	47	10	3	38	1.55	AT
chr1	432,159	432,302	trf	10	14.1	10	75	11	94	47	11	3	37	1.56	ATATATATAC
chr1	476,980	477,150	trf	7	23.1	7	76	18	136	41	3	1	53	1.25	TTATATA
chr1	490,052	490,077	trf	1	25	1	100	0	50	0	0	0	100	0	T
chr1	503,138	503,172	trf	2	17	2	100	0	68	50	0	0	50	1	TA
chr1	506,032	506,073	trf	3	13.7	3	84	0	55	73	24	0	2	0.96	AAC
chr1	517,589	517,629	trf	2	20	2	94	0	71	52	47	0	0	1	AC
chr1	520,776	520,871	trf	4	23	4	72	10	66	51	0	48	0	1	AAGG
chr1	520,792	520,921	trf	8	16.1	8	76	13	97	45	0	54	0	0.99	AAGGAGGG
chr1	520,883	520,940	trf	4	14.2	4	84	0	69	33	0	66	0	0.92	GAGG
chr1	533,492	533,520	trf	1	28	1	100	0	56	100	0	0	0	0	A
chr1	534,789	534,818	trf	5	5.8	5	100	0	58	82	17	0	0	0.66	AAAAC
chr1	597,051	597,101	trf	10	5	10	80	0	64	44	38	2	16	1.59	TACACACTCA
chr1	599,287	599,327	trf	5	8.8	5	89	10	52	0	17	0	82	0.67	TTTTC
chr1	599,287	599,330	trf	9	4.3	9	78	21	50	0	16	0	83	0.64	TTTTCTTTT
chr1	599,682	599,711	trf	5	5.8	5	100	0	58	0	0	17	82	0.66	TTTTG
chr1	599,948	599,988	trf	2	20	2	84	0	53	5	2	45	47	1.38	TG
chr1	602,209	602,359	trf	12	12.5	12	77	2	158	5	60	0	33	1.24	CTCTCCATCCCC
chr1	623,671	623,699	trf	2	14	2	100	0	56	0	0	50	50	1	GT
chr1	624,433	624,534	trf	4	25.2	4	83	0	67	37	2	59	0	1.13	AGGG
chr1	626,781	626,821	trf	2	20	2	100	0	80	0	0	50	50	1	GT
chr1	645,187	645,222	trf	4	8.8	4	87	0	52	22	2	2	71	1.13	TTTA
chr1	645,219	645,261	trf	12	3.4	12	81	15	50	0	19	0	80	0.7	TTTTTCCTTCTT
chr1	650,383	650,423	trf	2	20	2	100	0	80	50	50	0	0	1	AC
chr1	653,639	653,790	trf	4	38.2	4	84	12	206	72	0	27	0	0.84	AGAA
chr1	667,897	668,052	trf	12	12.2	12	76	12	107	47	10	3	38	1.54	ATATACATATAT
chr1	667,897	668,052	trf	2	78.5	2	74	5	91	47	10	3	38	1.54	AT
chr1	667,899	668,054	trf	10	15.1	10	74	12	109	47	10	3	38	1.55	ATATATATAC
chr1	711,957	712,094	trf	7	19.1	7	75	19	115	40	3	1	54	1.27	TTATATA
chr1	711,958	712,094	trf	2	75.5	2	71	20	104	41	3	1	53	1.27	TA
chr1	711,962	712,095	trf	11	12	11	78	13	130	40	4	1	53	1.3	TATTATATATC
chr1	725,051	725,080	trf	1	29	1	100	0	58	0	0	0	100	0	T
chr1	747,743	747,784	trf	3	13.7	3	84	0	55	73	24	0	2	0.96	AAC
chr1	759,446	759,498	trf	2	26	2	96	0	95	51	48	0	0	1	AC
chr1	762,644	762,739	trf	4	23	4	75	10	75	52	0	47	0	1	AAGG
chr1	762,660	762,809	trf	8	18.5	8	76	12	110	44	0	55	0	0.99	AAGGAGGG
chr1	762,751	762,804	trf	4	13.2	4	83	0	70	32	0	67	0	0.91	GAGG
chr1	776,604	776,633	trf	5	5.8	5	100	0	58	82	17	0	0	0.66	AAAAC
chr1	788,368	788,435	trf	2	34.5	2	72	14	52	47	2	47	1	1.26	AG
chr1	791,052	791,098	trf	5	8.5	6	86	13	57	30	0	54	15	1.41	GGAATG
chr1	808,289	808,338	trf	7	6.4	8	80	15	59	51	38	0	10	1.36	ACATACAC
chr1	832,736	832,781	trf	5	9	5	100	0	90	0	0	20	80	0.72	GTTTT
chr1	860,178	860,211	trf	1	33	1	100	0	66	0	0	0	100	0	T
chr1	861,778	862,160	trf	11	35.5	11	72	14	178	37	1	32	28	1.64	ATAGATGATAG