Datasets:

ReaKal
/

hg38.trf.short

Dataset card Data Studio Files Files and versions Community

Split (1)

train · 1k rows

chromosome stringclasses 1 value	start_position int64 10k 6.9M	end_position int64 10.5k 6.9M	computational_method stringclasses 1 value	period_size int64 1 12	copy_number float64 2.1 884	consensus_size int64 1 14	percent_matches int64 61 100	percent_indels int64 0 33	score int64 50 1.2k	A int64 0 100	C int64 0 81	G int64 0 84	T int64 0 100	entropy_0-2 float64 0 2	sequence stringlengths 1 14
chr1	1,588,451	1,588,476	trf	12	2.1	12	100	0	50	92	0	8	0	0.4	AAAAAAAAAGAA
chr1	1,589,160	1,589,203	trf	4	10.8	4	100	0	86	23	0	0	76	0.78	TTTA
chr1	1,592,518	1,592,543	trf	4	6.2	4	100	0	50	76	0	0	24	0.8	AAAT
chr1	1,594,910	1,596,817	trf	10	187.3	10	68	13	779	46	13	38	1	1.5	AGAGACAGAG
chr1	1,596,407	1,596,817	trf	12	36.3	12	66	21	142	45	8	42	3	1.52	GAGAGAGGCAGA
chr1	1,604,293	1,604,322	trf	1	29	1	100	0	58	0	0	0	100	0	T
chr1	1,608,029	1,608,126	trf	2	52	2	73	17	84	45	1	5	48	1.31	AT
chr1	1,609,821	1,609,851	trf	12	2.5	12	88	0	51	90	0	10	0	0.47	AAAAAAAAAAAG
chr1	1,612,528	1,612,574	trf	10	4.5	10	84	15	51	0	6	4	89	0.6	TTTTTTCTTT
chr1	1,615,888	1,615,914	trf	12	2.2	12	100	0	52	0	26	57	15	1.38	CGGCGCTGGGGT
chr1	1,629,846	1,629,871	trf	7	3.6	7	100	0	50	12	76	12	0	1.04	CCCCCAG
chr1	1,641,701	1,641,740	trf	3	13	3	88	0	60	0	61	0	38	0.96	CTC
chr1	1,650,303	1,650,330	trf	12	2.2	12	100	0	54	59	0	0	40	0.98	TAAATATTTAAA
chr1	1,653,825	1,653,863	trf	2	19	2	100	0	76	50	50	0	0	1	AC
chr1	1,658,918	1,658,950	trf	3	10.7	3	93	0	55	0	62	34	3	1.11	CGC
chr1	1,673,961	1,673,990	trf	8	3.8	8	90	9	51	93	0	6	0	0.36	AAAAAAGA
chr1	1,673,961	1,673,994	trf	11	3	11	91	8	50	90	0	9	0	0.44	AAAAAAAAAAG
chr1	1,680,301	1,680,333	trf	10	3.1	10	91	8	55	78	0	3	18	0.89	AAAAATTAAA
chr1	1,681,988	1,682,040	trf	1	52	1	100	0	104	100	0	0	0	0	A
chr1	1,684,789	1,684,814	trf	1	25	1	100	0	50	100	0	0	0	0	A
chr1	1,686,306	1,686,339	trf	10	3.4	10	95	4	59	0	6	0	93	0.33	TTTTCTTTTT
chr1	1,692,365	1,692,412	trf	7	6.7	7	90	0	67	27	51	21	0	1.48	GCACCCA
chr1	1,694,689	1,694,724	trf	1	35	1	100	0	70	100	0	0	0	0	A
chr1	1,699,598	1,699,638	trf	9	4.4	9	93	0	71	2	10	62	25	1.39	GTGTGCGGG
chr1	1,708,833	1,708,872	trf	3	13	3	88	0	60	0	61	0	38	0.96	CTC
chr1	1,716,814	1,716,852	trf	1	38	1	100	0	76	100	0	0	0	0	A
chr1	1,723,488	1,723,523	trf	1	35	1	100	0	70	100	0	0	0	0	A
chr1	1,736,801	1,736,846	trf	1	45	1	81	0	54	91	0	8	0	0.43	A
chr1	1,745,640	1,745,687	trf	7	6.7	7	87	0	58	29	48	21	0	1.5	GCACCCA
chr1	1,752,908	1,752,936	trf	3	9.3	3	100	0	56	0	67	0	32	0.91	CCT
chr1	1,762,759	1,762,794	trf	4	8.8	4	100	0	70	51	0	22	25	1.48	AATG
chr1	1,766,410	1,766,450	trf	1	40	1	100	0	80	100	0	0	0	0	A
chr1	1,768,372	1,768,409	trf	11	3.3	11	85	7	56	78	21	0	0	0.75	ACAAAACAAAA
chr1	1,768,374	1,768,409	trf	6	6	6	90	6	54	80	20	0	0	0.72	AAAACA
chr1	1,769,969	1,770,015	trf	6	7.7	6	100	0	92	84	15	0	0	0.62	AAAACA
chr1	1,773,676	1,773,730	trf	2	27	2	100	0	108	0	0	50	50	1	TG
chr1	1,779,667	1,779,692	trf	2	12.5	2	100	0	50	0	0	48	52	1	TG
chr1	1,807,463	1,807,493	trf	1	30	1	100	0	60	100	0	0	0	0	A
chr1	1,808,624	1,808,662	trf	4	10.2	4	83	16	55	0	0	23	76	0.79	GTTT
chr1	1,812,393	1,812,429	trf	2	18	2	88	0	54	50	44	0	5	1.25	AC
chr1	1,814,797	1,814,828	trf	1	31	1	93	0	53	96	0	3	0	0.21	A
chr1	1,823,242	1,823,267	trf	1	25	1	100	0	50	100	0	0	0	0	A
chr1	1,828,874	1,828,913	trf	2	19.5	2	89	0	60	51	43	0	5	1.24	AC
chr1	1,845,578	1,845,615	trf	3	13	3	83	11	51	72	0	0	27	0.84	AAT
chr1	1,845,824	1,845,872	trf	2	24	2	100	0	96	50	50	0	0	1	AC
chr1	1,855,321	1,855,359	trf	10	3.9	10	86	3	51	86	0	13	0	0.56	AAAAAAGAAA
chr1	1,865,261	1,865,300	trf	11	3.5	11	92	0	69	89	10	0	0	0.48	AAAAAACAAAA
chr1	1,869,185	1,869,211	trf	1	26	1	100	0	52	100	0	0	0	0	A
chr1	1,874,605	1,874,632	trf	1	27	1	100	0	54	100	0	0	0	0	A
chr1	1,901,105	1,901,253	trf	4	36	4	82	5	179	67	0	32	0	0.91	AAGA
chr1	1,904,424	1,904,468	trf	4	10.5	4	90	9	70	75	0	0	25	0.81	AAAT
chr1	1,919,188	1,919,223	trf	9	3.9	9	100	0	70	22	22	54	0	1.45	AGCGGCAGG
chr1	1,927,108	1,927,134	trf	8	3.2	8	100	0	52	15	38	34	11	1.83	CAGGGTCC
chr1	1,929,363	1,929,452	trf	8	10.6	8	73	20	58	22	1	70	5	1.14	GGGAGGGA
chr1	1,930,749	1,930,774	trf	12	2.1	12	100	0	50	44	8	32	16	1.76	AGTTGCAAAGGA
chr1	1,932,065	1,932,101	trf	7	5.1	7	93	0	63	86	13	0	0	0.58	CAAAAAA
chr1	1,932,580	1,932,610	trf	12	2.6	12	94	5	53	0	10	0	90	0.47	TTTTTTTCTTTC
chr1	1,945,889	1,945,916	trf	10	2.7	10	100	0	54	7	7	44	40	1.6	GTGTGTGCAT
chr1	1,945,990	1,946,068	trf	8	9.6	8	74	2	57	6	14	43	35	1.71	TGTGTGCG
chr1	1,948,874	1,949,153	trf	4	68	4	76	14	178	0	55	0	43	1.04	TTCC
chr1	1,949,120	1,949,166	trf	4	10.8	4	84	11	56	0	69	0	30	0.89	TCCC
chr1	1,952,532	1,952,615	trf	4	21	4	76	16	57	66	1	32	0	1	AAGA
chr1	1,963,456	1,963,483	trf	1	27	1	100	0	54	100	0	0	0	0	A
chr1	1,967,880	1,968,133	trf	4	64	4	73	3	118	38	1	35	24	1.63	GTGA
chr1	1,967,880	1,968,195	trf	12	26.7	12	73	9	191	40	1	35	23	1.63	GTGAGTGAATGA
chr1	1,967,881	1,968,141	trf	8	33.4	8	77	9	207	39	1	35	24	1.63	TGAGTGAA
chr1	1,967,929	1,968,191	trf	4	66.8	4	73	5	149	41	1	33	22	1.63	TGAA
chr1	1,969,120	1,969,494	trf	5	74.8	5	74	0	226	13	55	18	13	1.69	CCCAG
chr1	1,969,154	1,969,494	trf	10	34.5	10	76	4	260	12	55	18	12	1.69	GCCCAGCCCT
chr1	1,970,906	1,971,423	trf	8	61.4	8	68	18	161	31	41	14	12	1.83	ACATGCAC
chr1	1,970,911	1,971,424	trf	10	56.6	9	70	21	252	31	41	14	12	1.83	CACACTGCA
chr1	1,988,824	1,988,873	trf	6	7.8	6	82	8	62	16	81	0	2	0.78	CCCCCA
chr1	1,993,981	1,994,011	trf	11	2.8	11	95	5	53	86	0	0	13	0.57	AAAATAAAATA
chr1	1,996,920	1,996,950	trf	12	2.6	12	94	5	53	93	0	6	0	0.35	AAAAGAAAAAAA
chr1	2,002,819	2,002,845	trf	11	2.4	11	100	0	52	42	0	7	50	1.31	TTTATATAAAG
chr1	2,005,903	2,005,947	trf	2	22	2	90	9	72	0	47	2	50	1.13	CT
chr1	2,012,279	2,012,313	trf	5	6.8	5	100	0	68	82	0	0	17	0.67	AAAAT
chr1	2,016,833	2,016,872	trf	4	10.2	4	89	10	64	76	0	23	0	0.78	AAAG
chr1	2,018,334	2,018,397	trf	5	12.8	5	98	1	119	61	17	0	20	1.34	ATAAC
chr1	2,019,273	2,019,303	trf	11	2.8	11	95	5	53	0	26	63	10	1.26	GGCGGGCTCGG
chr1	2,034,399	2,034,426	trf	7	3.9	7	100	0	54	0	0	11	88	0.5	TTTTTTG
chr1	2,042,029	2,042,160	trf	10	14.2	10	69	16	70	8	12	41	38	1.73	TGTGCATGTG
chr1	2,042,032	2,042,099	trf	12	5.6	12	80	16	50	7	11	43	37	1.7	GCATGTGTGTGG
chr1	2,044,172	2,044,249	trf	10	7.9	10	71	16	54	49	32	11	6	1.65	ACACACAGAT
chr1	2,091,922	2,091,947	trf	11	2.3	11	100	0	50	52	8	0	40	1.31	AAATCTTTATA
chr1	2,095,699	2,095,952	trf	10	25.3	10	74	0	128	0	63	1	33	1.09	CTCCCCTCCC
chr1	2,098,648	2,098,697	trf	5	9.8	5	91	8	82	0	2	18	79	0.83	TTTTG
chr1	2,102,316	2,102,349	trf	5	6.8	5	89	6	50	0	0	15	84	0.61	TTTTG
chr1	2,114,772	2,114,801	trf	6	5	6	95	4	51	86	0	13	0	0.58	AAAAAG
chr1	2,118,713	2,118,755	trf	2	21	2	100	0	84	0	0	50	50	1	TG
chr1	2,120,293	2,120,322	trf	1	29	1	100	0	58	0	0	0	100	0	T
chr1	2,155,090	2,155,492	trf	12	33.7	12	65	15	109	22	4	44	28	1.72	TGGTGATGATGA
chr1	2,155,097	2,155,158	trf	3	20.3	3	72	0	50	26	3	40	29	1.72	GAT
chr1	2,155,108	2,155,225	trf	9	11.6	9	69	20	54	22	3	44	29	1.69	TGATGATGG
chr1	2,155,347	2,155,409	trf	9	6.9	9	74	7	54	24	4	45	25	1.73	GGTGATGAC
chr1	2,160,232	2,160,272	trf	2	20	2	94	0	71	0	2	50	47	1.14	GT
chr1	2,175,460	2,175,535	trf	12	6.3	12	78	1	71	29	65	1	4	1.19	CCAACCCCCAAC
chr1	2,187,280	2,187,322	trf	11	3.7	11	87	12	59	0	9	0	90	0.45	TTTTTTTTTTC
chr1	2,199,391	2,199,421	trf	5	6	5	100	0	60	20	60	20	0	1.37	CCCAG
chr1	2,207,909	2,207,955	trf	2	23	2	100	0	92	0	0	50	50	1	GT

Subsets and Splits