| ## Dataset: **OAIZIB-CM** | |
| | Source | link | | |
| | ------------ | ------------------------------------------------------------ | | |
| | Google Drive | [here](https://drive.google.com/drive/folders/13_afAKSH7ZMOI_Nk2gfoihbJKwafw1l9?usp=share_link) | | |
| | Huggingface | [here](https://huggingface.co/datasets/YongchengYAO/OAIZIB-CM/tree/main) | | |
| If you use our preprocessed data, please note that the manual segmentation annotations come from this work: | |
| - Automated Segmentation of Knee Bone and Cartilage combining Statistical Shape Knowledge and Convolutional Neural Networks: Data from the Osteoarthritis Initiative (https://doi.org/10.1016/j.media.2018.11.009) | |
| <br/><br/> | |
| ## Download from Huggingface | |
| ```bash | |
| #!/bin/bash | |
| pip install huggingface-hub[cli] | |
| huggingface-cli login --token $HF_TOKEN | |
| ``` | |
| ```python | |
| # python | |
| from huggingface_hub import snapshot_download | |
| snapshot_download(repo_id="YongchengYAO/OAIZIB-CM", repo_type='dataset', local_dir="/your/local/folder") | |
| ``` | |
| <br/><br/> | |
| ## Files | |
| ### Images & Labels | |
| - imagesTr: training images (#404) | |
| - labelsTr: training segmentation masks (#404) | |
| - imagesTs: testing images (#103) | |
| - labelsTs: testing segmentation masks (#103) | |
| ### Data Split & Info | |
| - `subInfo_train.xlsx`: list of training data | |
| - `subInfo_test.xlsx`: list of testing data | |
| - `kneeSideInfo.csv`: a file containing knee side information, used in CartiMorph Toolbox | |
| <br/><br/> | |
| ## Paper | |
| ``` | |
| @article{YAO2024103035, | |
| title = {CartiMorph: A framework for automated knee articular cartilage morphometrics}, | |
| journal = {Medical Image Analysis}, | |
| author = {Yongcheng Yao and Junru Zhong and Liping Zhang and Sheheryar Khan and Weitian Chen}, | |
| volume = {91}, | |
| pages = {103035}, | |
| year = {2024}, | |
| issn = {1361-8415}, | |
| doi = {https://doi.org/10.1016/j.media.2023.103035} | |
| } | |
| ``` | |
| ``` | |
| @misc{yao2024quantifyingkneecartilageshape, | |
| title={Quantifying Knee Cartilage Shape and Lesion: From Image to Metrics}, | |
| author={Yongcheng Yao and Weitian Chen}, | |
| year={2024}, | |
| eprint={2409.07361}, | |
| archivePrefix={arXiv}, | |
| primaryClass={eess.IV}, | |
| url={https://arxiv.org/abs/2409.07361}, | |
| } | |
| ``` | |