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Function and form of the shoulder in congenital and untreated growth hormone deficiency.

The shoulder is the most mobile joint in the entire human body. During arm elevation, it requires the integrity of a set of muscles, bones, and tendons. Individuals with short stature often need to raise their arms above the shoulder girdle and may have functional restriction or shoulder injuries. The impact of isolated GH deficiency (IGHD) on joints remains not well defined. The purpose of this work is to evaluate the function and structure of the shoulder in short-statured adult individuals with untreated IGHD due to the same homozygous mutation in the GHRH receptor gene.

Diagnostic Utility of NLR, PLR and MLR in Early Diagnosis of Gastric Cancer: an Analytical Cross-Sectional Study.

Inflammatory markers such as neutrophil-lymphocyte ratio (NLR), platelet-lymphocyte ratio (PLR) and monocyte-to-lymphocyte ratio (MLR) are linked with the pathogenesis of gastric cancer (GC). However, the clinical significance of the combination of these markers is unclear. Hence, this study was carried out to determine the individual and combined diagnostic accuracy of NLR, PLR and MLR among patients with GC.

Uncertainties surrounding the oldest fossil record of diatoms.

Molecular clocks estimate that diatom microalgae, one of Earth's foremost primary producers, originated near the Triassic-Jurassic boundary (200 Ma), which is close in age to the earliest, generally accepted diatom fossils of the genus Pyxidicula. During an extensive search for Jurassic diatoms from twenty-five sites worldwide, three sites yielded microfossils initially recognized as diatoms. After applying stringent safeguards and evaluation criteria, however, the fossils found at each of the three sites were rejected as new diatom records. This led us to systematically reexamine published evidence in support of Lower- and Middle-Jurassic Pyxidicula fossils. Although Pyxidicula resembles some extant radial centric diatoms and has character states that may have been similar to those of ancestral diatoms, we describe numerous sources of uncertainty regarding the reliability of these records. We conclude that the Lower Jurassic Pyxidicula fossils were most likely calcareous nannofossils, whereas the Middle Jurassic Pyxidicula species has been reassigned to the Lower Cretaceous and is likely a testate amoeba, not a diatom. Excluding the Pyxidicula fossils widens the gap between the estimated time of origin and the oldest abundant fossil diatom record to 75 million years. This study underscores the difficulties in discovering and validating ancient microfossils.

The effect of sulfur baths on hemorheological properties of blood in patients with osteoarthritis.

Balneotherapy is an effective treatment method in various diseases and commonly used treatment modality among patients with musculoskeletal disorders. Sulfur baths are known for healing properties however effect on rheological properties is unstudied. Thus the aim of our study was to determine the effect of sulfur balneotherapy on hemorheological blood indices. A total of 48 patients with osteoarthritis were enrolled to the study. Blood samples were collected twice, before and after 3-week time period. We evaluated complete blood count, fibrinogen, hs-CRP and blood rheology parameters such as elongation index (EI), half-time of total aggregation (T

Palmitoyl acyltransferase ZDHHC7 inhibits androgen receptor and suppresses prostate cancer.

The hormonal transcription factor androgen receptor (AR) is a master regulator of prostate cancer (PCa). Protein palmitoylation, which attaches a palmitate fatty acid to a substrate protein, is mediated by a class of 23 ZDHHC (Zinc-Finger DHHC motif)-family palmitoyltransferases. Although palmitoylation has been shown to modify many proteins and regulate diverse cellular processes, little is known about ZDHHC genes in cancer. Here we examined ZDHHC family gene expression in human tissue panels and identified ZDHHC7 as a PCa-relevant member. RNA-seq analyses of PCa cells with ZDHHC7 de-regulation revealed global alterations in androgen response and cell cycle pathways. Mechanistically, ZDHHC7 inhibits AR gene transcription and therefore reduces AR protein levels and abolishes AR signaling in PCa cells. Accordingly, ZDHHC7 depletion increased the oncogenic properties of PCa cells, whereas restoring ZDHHC7 is sufficient to suppress PCa cell proliferation and invasion in vitro and mitigate xenograft tumor growth in vivo. Lastly, we demonstrated that ZDHHC7 is downregulated in human PCa compared to benign-adjacent tissues, and its loss is associated with worse clinical outcomes. In summary, our study reveals a global role of ZDHHC7 in inhibiting androgen response and suppressing PCa progression and identifies ZDHHC7 loss as a biomarker for aggressive PCa and a target for therapeutic intervention.

Early neurodevelopmental outcomes of extreme preterm infants exposed to paracetamol: a retrospective cohort study.

Paracetamol is commonly used for analgesia and patent ductus arteriosus (PDA) treatment in preterm infants. We aimed to evaluate early neurodevelopmental outcomes of extreme preterm infants exposed to paracetamol during their neonatal admission.

Stent as bridge to surgery decreases postoperative complications without worsening oncological outcomes: retrospective unicentric cohort study and stent placement protocol.

Even if the use of stent as bridge to surgery (BTS) for obstructive colon cancer was described long ago, there is still much controversy on their use. Patient recovery before surgery and colonic desobstruction are just some of the reasons to defend this management that can be found in several available articles.

A novel small-molecular CCR5 antagonist promotes neural repair after stroke.

Chemokine receptor 5 (CCR5) is one of the main co-receptors of HIV-1, and has been found to be a potential therapeutic target for stroke. Maraviroc is a classic CCR5 antagonist, which is undergoing clinical trials against stroke. As maraviroc shows poor blood-brain barrier (BBB) permeability, it is of interest to find novel CCR5 antagonists suitable for neurological medication. In this study we characterized the therapeutic potential of a novel CCR5 antagonist A14 in treating ischemic stroke mice. A14 was discovered in screening millions compounds in the Chemdiv library based on the molecular docking diagram of CCR5 and maraviroc. We found that A14 dose-dependently inhibited the CCR5 activity with an IC

Phenotypic and genetic screening of Klebsiella pneumoniae isolates from human UTI patients for beta-lactamases and their genetic diversity analysis by ERIC and REP PCRs.

Klebsiella pneumoniae is one of the major nosocomial pathogens responsible for pneumoniae, septicaemia, liver abscesses, and urinary tract infections. Coordinated efforts by antibiotic stewardship and clinicians are underway to curtail the emergence of antibiotic-resistant strains. The objective of the present study is to characterize K. pneumoniae strains through antibiotic resistance screening for production of beta-lactamases (β-lactamases) such as extended spectrum beta lactamases (ESBLs), AmpC β-lactamases, and carbapenemases by phenotypic and genotypic methods and genetic fingerprinting by enterobacterial repetitive intergenic consensus-polymerase chain reaction (ERIC-PCR) and repetitive element palindromic PCR (REP-PCR). A total of 85 K. pneumoniae strains isolated from 504 human urinary tract infections (UTI) were used in this study. Only 76 isolates showed positive in phenotypic screening test (PST), while combination disc method (CDM) as phenotypic confirmatory test (PCT) confirmed 72 isolates as ESBL producers. One or more β-lactamase genes were detected by PCR in 66 isolates (91.66%, 66/72) with bla

Nucleic Acid Quality Assessment is Critical to the Success of the Oncomine Dx Target Test for Lung Cancer.

The Oncomine Dx Target Test (ODxTT) has been used as a companion diagnostic test for lung cancer. Here, we evaluated whether the amount of nucleic acid and the degree of RNA degradation are related to the success of the ODxTT.

The role of genetic polymorphisms of interleukin-1 (IL-1R1 and IL-1RN) in primary knee osteoarthritis in Indonesia.

This study aimed to evaluate the association of SNPs of the IL-1 family with the clinical severity of knee OA. This case‒control study was performed among 100 healthy knees and 130 osteoarthritis (OA) knees of people aged ≥ 50 years with a BMI ≥ 25 kg/m

Prefrontal allopregnanolone mediates the adverse effects of acute stress in a mouse model of tic pathophysiology.

Ample evidence suggests that acute stress can worsen symptom severity in Tourette syndrome (TS); however, the neurobiological underpinnings of this phenomenon remain poorly understood. We previously showed that acute stress exacerbates tic-like and other TS-associated responses via the neurosteroid allopregnanolone (AP) in an animal model of repetitive behavioral pathology. To verify the relevance of this mechanism to tic pathophysiology, here we tested the effects of AP in a mouse model recapitulating the partial depletion of dorsolateral cholinergic interneurons (CINs) seen in post-mortem studies of TS. Mice underwent targeted depletion of striatal CINs during adolescence and were tested in young adulthood. Compared with controls, partially CIN-depleted male mice exhibited several TS-relevant abnormalities, including deficient prepulse inhibition (PPI) and increased grooming stereotypies after a 30-min session of spatial confinement - a mild acute stressor that increases AP levels in the prefrontal cortex (PFC). These effects were not seen in females. Systemic and intra-PFC AP administration dose-dependently worsened grooming stereotypies and PPI deficits in partially CIN-depleted males. Conversely, both AP synthesis inhibition and pharmacological antagonism reduced the effects of stress. These results further suggest that AP in the PFC mediates the adverse effects of stress on the severity of tics and other TS-related manifestations. Future studies will be necessary to confirm these mechanisms in patients and define the circuitry responsible for the effects of AP on tics.

Accuracy of radiographic techniques in detection of the calcaneofibular ligament calcaneal insertion for lateral ankle ligament complex surgery.

Grade III ankle sprains that fail conservative treatment can require surgical management. Anatomic procedures have been shown to properly restore joint mechanics, and precise localization of insertion sites of the lateral ankle complex ligaments can be determined through radiographic techniques. Ideally, radiographic techniques that are easily reproducible intraoperatively will lead to a consistently well-placed CFL reconstruction in lateral ankle ligament surgery.

Effects of bisphenol F, bisphenol S, and bisphenol AF on cultured human osteoblasts.

Bisphenol A (BPA) analogs, like BPA, could have adverse effects on human health including bone health. The aim was to determine the effect of BPF, BPS and BPAF on the growth and differentiation of cultured human osteoblasts. Osteoblasts primary culture from bone chips harvested during routine dental work and treated with BPF, BPS, or BPAF for 24 h at doses of 10

ESBL-producing Vibrio vulnificus and V. alginolyticus harbour a plasmid encoding ISEc9 upstream of bla

In recent years, trade liberalisation has led to the spread of antibiotic-resistant bacteria (ARB) in food products. Because ARB has reportedly been found in imported foods, the spread of plasmid-mediated ARB through food products is a concern. Here, we report the complete genome sequences of ESBL-producing Vibrio vulnificus and V. alginolyticus strains harbouring a plasmid isolated from imported seafood. First, V. vulnificus and V. alginolyticus were isolated from purchased frozen and thawed Litopenaeus vannamei shrimp, and genome extraction and sequencing were performed. Hybrid genome assemblies were performed using Unicycler and annotated using DFAST. Then genome analysis was performed using BRIG. Plasmid comparisons showed that the plasmids carried by both Vibrios are remarkably similar and encode the same antibiotic-resistance genes. The 270-310 kb region specific to both Vibrios were isolated in this study and encodes the antibiotic-resistance genes bla

A weakly structured stem for human origins in Africa.

Despite broad agreement that Homo sapiens originated in Africa, considerable uncertainty surrounds specific models of divergence and migration across the continent

Cycles of satellite and transposon evolution in Arabidopsis centromeres.

Centromeres are critical for cell division, loading CENH3 or CENPA histone variant nucleosomes, directing kinetochore formation and allowing chromosome segregation

Microbial peptides activate tumour-infiltrating lymphocytes in glioblastoma.

Microbial organisms have key roles in numerous physiological processes in the human body and have recently been shown to modify the response to immune checkpoint inhibitors

Translating radiology reports into plain language using ChatGPT and GPT-4 with prompt learning: results, limitations, and potential.

The large language model called ChatGPT has drawn extensively attention because of its human-like expression and reasoning abilities. In this study, we investigate the feasibility of using ChatGPT in experiments on translating radiology reports into plain language for patients and healthcare providers so that they are educated for improved healthcare. Radiology reports from 62 low-dose chest computed tomography lung cancer screening scans and 76 brain magnetic resonance imaging metastases screening scans were collected in the first half of February for this study. According to the evaluation by radiologists, ChatGPT can successfully translate radiology reports into plain language with an average score of 4.27 in the five-point system with 0.08 places of information missing and 0.07 places of misinformation. In terms of the suggestions provided by ChatGPT, they are generally relevant such as keeping following-up with doctors and closely monitoring any symptoms, and for about 37% of 138 cases in total ChatGPT offers specific suggestions based on findings in the report. ChatGPT also presents some randomness in its responses with occasionally over-simplified or neglected information, which can be mitigated using a more detailed prompt. Furthermore, ChatGPT results are compared with a newly released large model GPT-4, showing that GPT-4 can significantly improve the quality of translated reports. Our results show that it is feasible to utilize large language models in clinical education, and further efforts are needed to address limitations and maximize their potential.

KCNQ1OT1 promotes retinoblastoma progression by targeting miR-339-3p that suppresses KIF23.

Long noncoding RNAs (lncRNAs) are involved in tumor formation and development. KCNQ1OT1 regulates the malignant proliferation of retinoblastoma (RB), but the specific mechanism remains to be further investigated.

Modelling the growth curve and estimation of associated genetic parameters in Munjal sheep.

The study of growth curves in sheep is an effective approach to monitor the animal development for predicting the growth rate and improving overall flock performance. The purpose of the present work was to study the growth curve traits of Munjal sheep using different non-linear models and to estimate the genetic parameters of those traits for the possibility of inclusion of them under selection strategy. Total 2285 weight records at birth, 3, 6 and 12 months of age of 706 lambs born to 48 sires and 149 dams were collected from the registers maintained from 2004 to 2019. Various non-linear growth models viz., Brody, Gompertz, logistic, Bertalanffy and negative exponential were fitted to targeted growth curve traits and then evaluated using goodness of fit criteria such as adjusted R

Fulminant Extra- And Intracranial Arteriovenous Thrombosis And Non-aneurysmal Subarachnoid Hemorrhage Following COVID-19 Infection.

Coronavirus disease of 2019 (COVID-19) is associated with increased risk of stroke and intracranial hemorrhage. This first report of fulminant panvascular arteriovenous thrombosis with subarachnoid hemorrhage (SAH) in a post-COVID-19 infection is attributed to extensive arteriovenous inflammation leading to arterial rupture following vasculitis.

Neuroimaging of central nervous system tuberculosis.

A 20-month-old female, not immunized with Bacillus Calmette-Guérin (BCG) vaccine, was admitted due to a four-day history of fever and cough. In the past three months, she presented respiratory infections, weight loss and enlarged cervical lymph nodes. On day two of admission, she displayed drowsiness and positive Romberg's sign; cerebrospinal fluid (CSF) workout revealed 107/ul cells, low glucose and high protein levels. Ceftriaxone and acyclovir were initiated, and she was transferred to our tertiary hospital. Brain magnetic resonance imaging showed punctiform focal areas of restricted diffusion in left capsular lenticular region suggestive of vasculitis secondary to infection. Tuberculin skin test and interferon-gamma release assay were positive. She started tuberculostatic therapy, but two days later she presented tonic-clonic seizures and impaired consciousness. Cerebral computed tomography (CT) revealed tetrahydrocephalus (Figure 1), needing external ventricular derivation. She had a slow clinical improvement, requiring several neurosurgical interventions and developing a syndrome of inappropriate antidiuretic secretion alternating with cerebral salt wasting. Positive results for Mycobacterium tuberculosis were obtained by CSF culture and by polymerase chain reaction in CSF, bronchoalveolar lavage and gastric aspirate specimens. Repeated brain CT showed a large-vessel vasculitis with basal meningeal enhancement, typical of central nervous system (CNS) tuberculosis (Figure 2). She completed one month of corticosteroids and maintained antituberculosis treatment. At two years of age, she has spastic paraparesis and no language skills. Portugal had 1836 cases of tuberculosis (17.8 per 100000) in 2016 and was considered a low-incidence country; consequently, BCG vaccination is not universal (1). We present a severe case of CNS tuberculosis with intracranial hypertension, vasculitis and hyponatremia, associated with poorer outcomes (2). A high index of suspicion allowed prompt start of antituberculosis treatment. Diagnosis was corroborated by microbiological positivity and a typical triad in neuroimaging (hydrocephalus, vasculitis and basal meningeal enhancement) (3), which we wish to emphasize.

Subretinal Pseudocysts: A Comprehensive Analysis of this Novel OCT Finding.

In current clinical practice, several optical coherence tomography (OCT) biomarkers have been proposed for the assessment of severity and prognosis of different retinal diseases. Subretinal pseudocysts are subretinal cystoid spaces with hyperreflective borders and only a few single cases have been reported thus far. The aim of the study was to characterize and investigate this novel OCT finding, exploring its clinical outcome.

Stabilizing Liquids Using Interfacial Supramolecular Assemblies.

Stabilizing liquids based on supramolecular assembly (non-covalent intermolecular interactions) has attracted significant interest, due to the increasing demand for soft, liquid-based devices where the shape of the liquid is far from the equilibrium spherical shape. The components comprising these interfacial assemblies must have sufficient binding energies to the interface to prevent their ejection from the interface when the assemblies are compressed. Here, we highlight recent advances in structuring liquids based on non-covalent intermolecular interactions. We describe some of the progress made that reveals structure-property relationships. In addition to treating advances, we discuss some of the limitations and provide a perspective on future directions to inspire further studies on structured liquids based on supramolecular assembly.

Anti-adherence Activity of Monomicrobial and Polymicrobial Food-Derived Enterococcus spp. Biofilms Against Pathogenic Bacteria.

Enterococcus species are commensal organisms of the gastrointestinal tract and can also be isolated from traditional food products. They are used as probiotics in animals and less often in humans. This study aimed to investigate the antibacterial and anti-adhesive activities of twelve food-origin Enterococcus spp. biofilms on stainless steel AISI 316 L against foodborne pathogens, including Listeria monocytogenes CECT4032, Pseudomonas aeruginosa ATCC27853, and Escherichia coli ATCC25922. The antimicrobial and co-aggregation abilities of Enterococcus spp. were evaluated using spots-agar test and spectrophotometry aggregation assay, respectively. The anti-adhesive activity of selected strains on pathogenic bacteria was tested using serial dilution technique. Enterococci strains in planktonic mode showed strong inhibition activity against different pathogens tested with a significant difference in co-aggregation capacity. Moreover, L. monocytogenes and E. coli presented a low auto-aggregation rate compared to P. aeruginosa, which showed an amount of 11.25%. Scanning electron microscopy (SEM) revealed that biofilm biomass of Enterococcus spp. increased after 10 days. The thick layer of enterococci biofilms on AISI 316 L caused a low adhesion of L. monocytogenes, resulting in a reduction of approximately 2.8 log CFU/cm² for some selected strains. Additionally, Enterococcus monocultures' biofilms were more efficient than polymicrobial cultures (a cocktail of enterococci strains) in controlling pathogen adhesion. These results indicate that monocultures of Enterococcus spp. biofilms could be used to prevent the adhesion of pathogenic bacteria on AISI 316 L.

CPPVec: an accurate coding potential predictor based on a distributed representation of protein sequence.

Long non-coding RNAs (lncRNAs) play a crucial role in numbers of biological processes and have received wide attention during the past years. Since the rapid development of high-throughput transcriptome sequencing technologies (RNA-seq) lead to a large amount of RNA data, it is urgent to develop a fast and accurate coding potential predictor. Many computational methods have been proposed to address this issue, they usually exploit information on open reading frame (ORF), protein sequence, k-mer, evolutionary signatures, or homology. Despite the effectiveness of these approaches, there is still much room to improve. Indeed, none of these methods exploit the contextual information of RNA sequence, for example, k-mer features that counts the occurrence frequencies of continuous nucleotides (k-mer) in the whole RNA sequence cannot reflect local contextual information of each k-mer. In view of this shortcoming, here, we present a novel alignment-free method, CPPVec, which exploits the contextual information of RNA sequence for coding potential prediction for the first time, it can be easily implemented by distributed representation (e.g., doc2vec) of protein sequence translated from the longest ORF. The experimental findings demonstrate that CPPVec is an accurate coding potential predictor and significantly outperforms existing state-of-the-art methods.

Bartholin's gland cyst caused by Sneathia amnii: a case report.

Sneathia amnii is a conditional pathogen of the female genital tract that is involved in bacterial vaginosis and poor reproductive and perinatal outcomes. Few studies have reported subcutaneous cysts following invasive infection caused by S amnii.

RNA-seq analysis to identify genes related to resting egg production of panarctic Daphnia pulex.

The genus Daphnia switches its reproductive mode from subitaneous egg production to resting egg production in response to environmental stimuli. Although this life history trait is essential for surviving unsuitable environments, the molecular mechanism of resting egg production is little understood. In this study, we examined genes related to induction of resting egg production using two genotypes of panarctic Daphnia pulex, the JPN1 and JPN2 lineages, which differ genetically in the frequency of resting egg production. We reared these genotypes under high and low food levels. At the high food level, individuals of both genotypes continually produced subitaneous eggs, whereas at the low food level, only the JPN2 genotype produced resting eggs. Then, we performed RNA-seq analysis on specimens of three instars, including before and after egg production.

A prediction model to predict in-hospital mortality in patients with acute type B aortic dissection.

Acute type B aortic dissection (ABAD) is a life-threatening cardiovascular disease. A practicable and effective prediction model to predict and evaluate the risk of in-hospital death for ABAD is required. The present study aimed to construct a prediction model to predict the risk of in-hospital death in ABAD patients.

Time to development of surgical site infection and its predictors among general surgery patients admitted at specialized hospitals in Amhara region, northwest Ethiopia: a prospective follow-up study.

Surgical site infection is an infection occurring within 30 days after surgery. It is recently reported that evidence-based information on the specific time when the majority of surgical site infections would develop is a key to early detect the infection as well as to preventing and early intervene against their pressing and fatal complications. Therefore, the current study aimed to determine the incidence, predictors, and time to development of surgical site infection among general surgery patients at specialized hospitals in the Amhara region.

Frequencies and reasons for unplanned emergency department return visits by older adults: a cohort study.

As unplanned Emergency Department (ED) return visits (URVs) are associated with adverse health outcomes in older adults, many EDs have initiated post-discharge interventions to reduce URVs. Unfortunately, most interventions fail to reduce URVs, including telephone follow-up after ED discharge, investigated in a recent trial. To understand why these interventions were not effective, we analyzed patient and ED visit characteristics and reasons for URVs within 30 days for patients aged ≥ 70 years.

Long-term effects of contrast media exposure on renal failure progression: a retrospective cohort study.

With the constant need for technique improvement for ensuring correct diagnoses and precise treatment, imaging examinations that use contrast media have become unavoidable and indispensable. However, the long-term effects of contrast media on renal function remain unclear in populations with advanced renal failure. This study aimed to examine the relationship between contrast media exposure and long-term trends in renal function in patients with renal failure.

A Fluorescence Cross-Correlation-Spectroscopy-Based Immunoassay for Rapid, Selective, and Accurate Protein Sizing in Human Plasma, Applied to the von Willebrand Factor.

Multimeric abnormalities in plasma von Willebrand factor (VWF) cause bleeding or clotting disorders. Electrophoretic analysis of multimers is used to detect such abnormalities but is qualitative, slow, and difficult to standardize. Fluorescence correlation spectroscopy (FCS) is a good alternative but is affected by low selectivity and concentration bias. Here, we report the development of a homogeneous immunoassay based on dual-color fluorescence cross-correlation spectroscopy (FCCS) that overcomes these challenges. By performing a mild denaturation treatment followed by reacting with polyclonal antibodies, the concentration bias was drastically reduced. The use of a dual antibody assay improved selectivity. Diffusion times of immunolabeled VWF were measured with FCCS and standardized relative to calibrator measurements. The assay measures size changes in VWF using 1 μL of plasma and less than 10 ng of antibody per measurement and was validated over a 16-fold range of VWF antigen concentration (VWF:Ag), with a sensitivity of VWF:Ag 0.8%. Concentration bias and imprecision were less than 10%. Measurements were unaffected by hemolytic, icteric, or lipemic interference. Strong correlations were obtained with reference densitometric readouts (0.97 for calibrators, 0.85 for clinical samples), and significant differences were found between normal (

The value of mesenteric closure after laparoscopic right hemicolectomy: a scoping review.

To evaluate the prognostic impact and describe suturing tools of mesenteric closure after laparoscopic right hemicolectomy (LRH).

PKD2/polycystin-2 inhibits LPS-induced acute lung injury in vitro and in vivo by activating autophagy.

Polycystin-2 (PC2), which is a transmembrane protein encoded by the PKD2 gene, plays an important role in kidney disease, but its role in lipopolysaccharide (LPS)-induced acute lung injury (ALI) is unclear. We overexpressed PKD2 in lung epithelial cells in vitro and in vivo and examined the role of PKD2 in the inflammatory response induced by LPS in vitro and in vivo. Overexpression of PKD2 significantly decreased production of the inflammatory factors TNF-α, IL-1β, and IL-6 in LPS-treated lung epithelial cells. Moreover, pretreatment with 3-methyladenine (3-MA), an autophagy inhibitor, reversed the inhibitory effect of PKD2 overexpression on the secretion of inflammatory factors in LPS-treated lung epithelial cells. We further demonstrated that overexpression of PKD2 could inhibit LPS-induced downregulation of the LC3BII protein levels and upregulation of SQSTM1/P62 protein levels in lung epithelial cells. Moreover, we found that LPS-induced changes in the lung wet/dry (W/D) weight ratio and levels of the inflammatory cytokines TNF-α, IL-6 and IL-1β in the lung tissue were significantly decreased in mice whose alveolar epithelial cells overexpressed PKD2. However, the protective effects of PKD2 overexpression against LPS-induced ALI were reversed by 3-MA pretreatment. Our study suggests that overexpression of PKD2 in the epithelium may alleviate LPS-induced ALI by activating autophagy.

The independent and joint association of accelerometer-measured physical activity and sedentary time with dementia: a cohort study in the UK Biobank.

Research on the association of physical activity and sedentary time with dementia is accumulating, though elusive, and the interaction effects of the two remain unclear. We analysed the joint associations of accelerometer-measured physical activity and sedentary time with risk of incident dementia (all-cause dementia, Alzheimer's disease and vascular dementia).

Evaluating person-centered care in residential care facilities from the perspective of caregivers in South Korea: a survey.

As many older people spend their time in residential care facilities, the demand for person-centered care (PCC), which affects their quality of life, is increasing. Many residential care facility residents have cognitive problems, such as dementia and strokes. Providing quality care upholds their rights as human beings. Currently, the PCC tools used in South Korea are only translations of foreign tools into Korean, so it is necessary to develop tools for older adult care facilities that reflect the reality of Korean care facilities for older adults. This study aims to develop a tool for measuring PCC in residential care facilities for older people from the perspectives of care givers.

Rapid start antiretroviral therapies for improved engagement in HIV care: implementation science evaluation protocol.

In 2020, the Health Resources and Services Administration's HIV/AIDS Bureau funded an initiative to promote implementation of rapid antiretroviral therapy initiation in 14 HIV treatment settings across the U.S. The goal of this initiative is to accelerate uptake of this evidence-based strategy and provide an implementation blueprint for other HIV care settings to reduce the time from HIV diagnosis to entry into care, for re-engagement in care for those out of care, initiation of treatment, and viral suppression. As part of the effort, an evaluation and technical assistance provider (ETAP) was funded to study implementation of the model in the 14 implementation sites.

Modeling the effect of bilateral sagittal split osteotomy on posterior, superior and medial space dimensions of the temporomandibular joint: a retrospective controlled cohort study.

To model the effect of isolated bilateral sagittal split osteotomy (BSSO) on changes in posterior (PSD), superior (SSD), and medial space dimensions (MSD) of the temporomandibular joint.

Endovascular treatment of a traumatic thoracic pseudo-aneurysm in a pediatric patient: a case report with review of literature.

Blunt aortic injury (BAI) as a result of thoracic trauma is a rare entity in the adult and pediatric population. The endovascular approach has been the preferred method of management over operative repair in adults. However, data on pediatrics is limited to case reports and case series with no long-term follow-up. There are no current guidelines for management in the pediatric population. We are reporting a successful repair of a traumatic thoracic aortic aneurysm in a 13 year old boy with covered stents, with a review of relevant literature.

Determinants of awareness, value perception, and societal support for sexual and reproductive health services among in-school adolescents in South-eastern Nigeria.

Adolescents are vulnerable to sexual and reproductive health (SRH) risks yet, have poor utilisation of SRH services due to personal, social, and demographic influences. This study aimed to compare the experiences of adolescents that had received targeted adolescent SRH interventions and those that did not and evaluated the determinants of awareness, value perception, and societal support for SRH service utilisation among secondary school adolescents in eastern Nigeria.

Infectious disease hotlines to provide advice to general practitioners: a prospective study.

Telephone hotlines in infectious diseases (ID) are part of antimicrobial stewardship programs designed to provide support and expertise in ID and to control antibiotic resistance. The aim of the study was to characterize the activity of the ID hotlines and estimate their usefulness for general practitioners (GPs).

Identification of critical quality factors and critical satisfaction gaps in emergency training courses for new nurses by the multi-criteria network structure model.

To identify critical quality factors and critical satisfaction gaps in emergency training courses for new nurses through a systematic decision-making model.

Pulmonary adenoid cystic carcinoma: molecular characteristics and literature review.

Pulmonary adenoid cystic carcinoma (PACC) is an exceptionally rare salivary gland-type malignant neoplasm. Because of its clinical manifestations, imaging features are not different from other types of non-small cell lung cancer, which is a diagnostic challenge for most doctors.

Efficacy and safety of duloxetine in chronic musculoskeletal pain: a systematic review and meta-analysis.

Chronic musculoskeletal pain (CMP) is a complex condition that is mainly treated with analgesic drugs. However, antidepressant intervention is also an important factor in the treatment of CMP. Duloxetine is an effective treatment option for patients with CMP as its antidepressant effect. The purpose of this article is to evaluate the efficacy and safety of duloxetine in treating CMP.

Evaluation of the dislodgement force of splinted restorations with engaging conical abutments over multiple nonparallel implants (in-vitro study).

Splinted multiunit cement-retained restorations with screw access channels over engaging abutments are viable implant prosthetic options. However, information regarding the maximum degree of divergence between multiple implants is lacking. The purpose of this in vitro study was to determine the maximum degree of divergence between 2 adjacent implants with conical connections that allows insertion and removal of splinted restorations with engaging preparable abutments or titanium base abutments.

Illness perception, health literacy, self-efficacy, adherence and quality of life in patients with intermittent claudication - a longitudinal cohort study.

Patients with intermittent claudication need lifelong treatment with secondary prevention to prevent cardiovascular events and progression of atherosclerotic disease. Illness perception, health literacy, self-efficacy, adherence to medication treatment, and quality of life are factors influencing patients' self-management. Knowledge of these factors could be important when planning for secondary prevention in patients with intermittent claudication.

Does the immediate reimbursement of medical insurance reduce the socioeconomic inequality in health among the floating population? Evidence from China.

Enhancing health intervention for floating populations has become an essential aspect of public health around the world. China launched a policy reform aimed at implementing immediate reimbursement for trans-provincial inpatient treatments. The objective of this study was to investigate the effects of this policy change on socioeconomic inequality in health among the floating population.

Using cognitive load theory to evaluate and improve preparatory materials and study time for the flipped classroom.

Preclinical medical education is content-dense and time-constrained. Flipped classroom approaches promote durable learning, but challenges with unsatisfactory student preparation and high workload remain. Cognitive load theory defines instructional design as "efficient" if learners can master the presented concepts without cognitive overload. We created a PReparatory Evaluation Process (PREP) to systematically assess and measure improvement in the cognitive-load efficiency of preparatory materials and impact on study time (time-efficiency).

Southern Europe is becoming climatically favourable for African birds: anticipating the establishment of a new species.

The current modification of species distribution ranges, as a response to a warmer climate, constitutes an interesting line of work and a recent challenge for biogeography. This study aimed to determine if the climatic conditions of southern Europe are adequate to host a typical African species, the House Bunting, which is registered regularly during the last years, still in low numbers. To this end, the distribution of the species in its native range was modelled, both in the present and in future climate scenarios, using its current breeding distribution areas and a set of environmental variables.

The influence of the environment on the patient-centered therapeutic relationship in physical therapy: a qualitative study.

Currently, in the scientific literature there is a great interest on the study of strategies to implement patient-centered care. One of the main tools for this is the therapeutic relationship. Some studies suggest that the perception of the environment in which the treatment takes place can influence the perception of its quality, but this is not explored in physical therapy. For all these reasons, the aim of this study was to understand the influence of the environment in which physical therapy treatment takes place on the patients' perception of the quality of the patient-centered therapeutic relationship in public health centers in Spain.

The effect of marital satisfaction on the self-assessed depression of husbands and wives: investigating the moderating effects of the number of children and neurotic personality.

Based on the family system theory, there is an interactive relationship in the family, especially the cognitive style and emotional changes of the husband and wife will affect the behavior, cognition and emotion of the partner. Data about the effects of marital relationships on mental health are often paired. Scholars study the effect of individual independent variables on the dependent variables and the effect of spouse independent variables on the dependent variables to explore the actor and partner effect in marital relationships.

Effervescent cannabidiol solid dispersion-doped dissolving microneedles for boosted melanoma therapy via the "TRPV1-NFATc1-ATF3" pathway and tumor microenvironment engineering.

Conventional dissolving microneedles (DMNs) face significant challenges in anti-melanoma therapy due to the lack of active thrust to achieve efficient transdermal drug delivery and intra-tumoral penetration.

RabbitTClust: enabling fast clustering analysis of millions of bacteria genomes with MinHash sketches.

We present RabbitTClust, a fast and memory-efficient genome clustering tool based on sketch-based distance estimation. Our approach enables efficient processing of large-scale datasets by combining dimensionality reduction techniques with streaming and parallelization on modern multi-core platforms. 113,674 complete bacterial genome sequences from RefSeq, 455 GB in FASTA format, can be clustered within less than 6 min and 1,009,738 GenBank assembled bacterial genomes, 4.0 TB in FASTA format, within only 34 min on a 128-core workstation. Our results further identify 1269 redundant genomes, with identical nucleotide content, in the RefSeq bacterial genomes database.

Identification of the Main Chemical constituents and mechanism of Renshen Guben oral liquid against Renal Fibrosis.

Renal fibrosis is the late stage of many chronic kidney diseases (CKD). Clinically, there is almost no effective treatment for renal fibrosis except dialysis. Renshen Guben oral liquid (RSGB) is a Chinese patent medicine approved by National Medical Products Administration (NMPA), which is suitable for clinical patients with chronic nephritis. Currently, the chemical constituents of RSGB remains unclear, and its efficacy and mechanism on renal fibrosis have not been reported.

Fighting reviewer fatigue or amplifying bias? Considerations and recommendations for use of ChatGPT and other large language models in scholarly peer review.

The emergence of systems based on large language models (LLMs) such as OpenAI's ChatGPT has created a range of discussions in scholarly circles. Since LLMs generate grammatically correct and mostly relevant (yet sometimes outright wrong, irrelevant or biased) outputs in response to provided prompts, using them in various writing tasks including writing peer review reports could result in improved productivity. Given the significance of peer reviews in the existing scholarly publication landscape, exploring challenges and opportunities of using LLMs in peer review seems urgent. After the generation of the first scholarly outputs with LLMs, we anticipate that peer review reports too would be generated with the help of these systems. However, there are currently no guidelines on how these systems should be used in review tasks.

Family caregiver involvement and role in hospital at home for adults: the patients' and family caregivers' perspective - a Norwegian qualitative study.

Hospital at home (HaH) provides acute healthcare services in patients' homes instead of traditional in-patient care. Research has reported positive outcomes for patients and reduced costs. Although HaH has developed into a global concept, we have little knowledge about the involvement and role of family caregivers (FCs) of adults. The aim of this study was to explore FC involvement and role during HaH treatment as perceived by patients and FCs in a Norwegian healthcare context.

Validation of the relative biological effectiveness of active-energy scanning carbon-ion radiotherapy on a commercial treatment planning system with a microdosimetic kinetic model.

The study objective was to validate the relative biological effectiveness (RBE) calculated by the modified microdosimetric kinetic model in RayStation (Ray-MKM) for active-energy scanning carbon-ion radiotherapy.

Individualized design of thoracodorsal artery perforator chimeric flap for customized reconstruction of complex three-dimensional defects in the extremities.

It was always challenging to accurately and effectively reconstruct the complicated defects with three-dimensional tissue deficits in the extremities. Muscle-chimeric perforator flap is an excellent choice for repairing those complicated wound. However, problems like donor-site morbidity and time-consuming intramuscular dissection still exist. This purpose of this study was to present a novel design of the thoracodorsal artery perforator (TDAP) chimeric flap for the customized reconstruction of complex three-dimensional tissue defects in the extremities.

The role of angiotensin I-converting enzyme gene polymorphism and global DNA methylation in the negative associations between urine di-(2-ethylhexyl) phthalate metabolites and serum adiponectin in a young Taiwanese population.

Adiponectin is a key protein produced in adipose tissue, with crucial involvement in multiple metabolic processes. Di-(2-ethylhexyl) phthalate (DEHP), one of the phthalate compounds used as a plasticizer, has been shown to decrease adiponectin levels in vitro and in vivo studies. However, the role of angiotensin I-converting enzyme (ACE) gene polymorphism and epigenetic changes in the relationship between DEHP exposure and adiponectin levels is not well understood.

The impact of COVID-19 on electronic repeat dispensing (eRD) in general practice.

Electronic repeat dispensing (eRD) has been part of the community pharmacy contact since 2005 and a requirement in the General Medical Services contract since 2019. NHS England highlights benefits of eRD as increased efficiency in general practice of 2.7 million hours annually if 80% of all repeat prescriptions are issued as eRD. Despite clear benefits to patients, community pharmacies and general practices, the uptake of eRD remains low and variable across general practices in West Yorkshire, UK.

Senescence-related impairment of autophagy induces toxic intraneuronal amyloid-β accumulation in a mouse model of amyloid pathology.

Aging is the main risk factor for Alzheimer's disease (AD) and other neurodegenerative pathologies, but the molecular and cellular changes underlying pathological aging of the nervous system are poorly understood. AD pathology seems to correlate with the appearance of cells that become senescent due to the progressive accumulation of cellular insults causing DNA damage. Senescence has also been shown to reduce the autophagic flux, a mechanism involved in clearing damaged proteins from the cell, and such impairment has been linked to AD pathogenesis. In this study, we investigated the role of cellular senescence on AD pathology by crossing a mouse model of AD-like amyloid-β (Aβ) pathology (5xFAD) with a mouse model of senescence that is genetically deficient for the RNA component of the telomerase (Terc

Hospital-based clinicians lack knowledge and comfort in initiating medications for opioid use disorder: opportunities for training innovation.

Hospital-based clinicians infrequently initiate medications for opioid use disorder (MOUD) for hospitalized patients. Our objective was to understand hospital-based clinicians' knowledge, comfort, attitudes, and motivations regarding MOUD initiation to target quality improvement initiatives.

Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability.

Computational methods represent the lifeblood of modern molecular biology. Benchmarking is important for all methods, but with a focus here on computational methods, benchmarking is critical to dissect important steps of analysis pipelines, formally assess performance across common situations as well as edge cases, and ultimately guide users on what tools to use. Benchmarking can also be important for community building and advancing methods in a principled way. We conducted a meta-analysis of recent single-cell benchmarks to summarize the scope, extensibility, and neutrality, as well as technical features and whether best practices in open data and reproducible research were followed. The results highlight that while benchmarks often make code available and are in principle reproducible, they remain difficult to extend, for example, as new methods and new ways to assess methods emerge. In addition, embracing containerization and workflow systems would enhance reusability of intermediate benchmarking results, thus also driving wider adoption.

[Research and application of the SARS-CoV-2 vaccine based on adenovirus vector technology platform].

During the global efforts to prevent and control the COVID-19 pandemic, extensive research and development of SARS-CoV-2 vaccines using various technical approaches have taken place. Among these, vaccines based on adenovirus vector have gained substantial knowledge and experience in effectively combating potential emerging infectious diseases, while also providing novel ideas and methodologies for vaccine research and development (R&D). This comprehensive review focuses on the adenovirus vector technology platform in vaccine R&D, emphasizing the importance of mucosal immunity induced by adenoviral vector-based vaccine for COVID-19 prevention. Furthermore, it analyzes the key technical challenges and obstacles encountered in the development of vaccines based on the adenovirus vector technology platform, with the aim of providing valuable insights and references for researchers and professionals in related fields.

Efficacy and safety of long-acting cabotegravir versus oral tenofovir disoproxil fumarate-emtricitabine as HIV pre-exposure prophylaxis: A systematic review and meta-analysis.

WHO guidelines recommend daily oral tenofovir disoproxil fumarate (TDF) and emtricitabine (FTC) for pre-exposure prophylaxis (PrEP) of HIV in people at high risk of HIV infection. However, due to social, psychological and other reasons, the compliance with daily oral TDF-FTC in real life is low. Long-acting cabotegravir is currently the only long-acting drug approved by the U.S. Food and Drug Administration (FDA) for HIV PrEP. Due to the long dosing interval (8 weeks), long-acting cabotegravir has low compliance requirements for people at high risk of HIV infection. We aimed to discuss the feasibility of long-acting cabotegravir to replace TDF-FTC as HIV PrEP based on efficacy and safety analyses. Randomized controlled trials were retrieved, and R software was used for meta-analysis after data extraction. and discussion: Results of the meta-analysis showed that compared with TDF-FTC, long-acting cabotegravir was associated with a lower risk of HIV infection (HR = 0.22, 95% CI: 0.08-0.59, p < 0.01), less decreased creatinine clearance (RR = 0.96, 95% CI: 0.93-0.99, p < 0.01), but more tolerated injection sites adverse events (p < 0.01). No statistically significant differences were found between long-acting cabotegravir and oral placebo in non-injection-related adverse events (creatine phosphokinase, headache, nasopharyngitis, upper respiratory tract infection and gastroenteritis) (p > 0.05). Long-acting cabotegravir has a manageable safety profile and is more effective than TDF-FTC in preventing HIV infection. Interestingly, decreased creatinine clearance occurred less frequently with long-acting cabotegravir than with TDF-FTC. Long-acting cabotegravir is very promising to replace TDF-TFC in the future, which requires more large-sample, high-quality RCTs to verify.

Management of trophoblastic tumors : review of evidence, current practice, and future directions.

Gestational trophoblastic neoplasia (GTN) is a group of rare tumors characterized by abnormal trophoblastic proliferation following pregnancy including invasive moles, choriocarcinomas, and intermediate trophoblastic tumors (ITT). Although the treatment and follow-up of GTN has been heterogeneous, globally the emergence of expert networks has helped to harmonize its management.

Hydrazone Molecular Switches with Paramagnetic Center as

The design and synthesis of hydrazone-based switches with a CF

Evaluation of an adapted virtual training for master trainers of the WHO Caregiver Skills Training Program during the COVID-19 pandemic.

The COVID-19 pandemic interrupted in-person professional activities. We developed and evaluated a remote training approach for master trainers of the Caregiver Skills Training Program. Master trainers support community practitioners, who in turn deliver the Caregiver Skills Training Program to caregivers of children with developmental delays or disabilities. The Caregiver Skills Training Program teaches caregivers how to use strategies to enhance learning and interactions during everyday play and home activities and routines with their child. The aim of this study was to evaluate the remote training of master trainers on Caregiver Skills Training Program. Twelve out of the 19 practitioners who enrolled in the training completed the study. The training consisted of a 5-day in-person session completed prior to the pandemic, followed by supporting participants' ability to identify Caregiver Skills Training Program strategies through coding of video recordings over 7 weekly meetings and group discussions and ended with participants independently coding a set of 10 videos for Caregiver Skills Training Program strategies. We found all but one participant was able to reliably identify Caregiver Skills Training Program strategies from video recordings despite a lack of ability to practice the Caregiver Skills Training Program strategies with children due to the pandemic. Taken together, our findings illustrate the feasibility and value of remote training approaches in implementing interventions.

Long-Lived Charge Separated States in Anthraquinone-Phenothiazine Dyads: Synthesis and Study of the Photophysical Property by Using Transient Optical and Magnetic Resonance Spectroscopies.

In order to obtain long-lived charge separated (CS) states in electron donor-acceptor dyads, herein we prepared a series of anthraquinone (AQ)-phenothiazine (PTZ) dyads, with adamantane as the linker. UV-vis absorption spectra show negligible electronic interaction between the AQ and PTZ units at ground state, yet charge transfer (CT) emission bands were observed. Nanosecond transient absorption shows that the

Analgesic stewardship in Australian residential aged care facilities: Retrospective audit of a collaborative approach to optimising opioid use.

To evaluate retrospectively an analgesic stewardship role of a non-dispensing pharmacist as part of a general practice team providing primary care services to residential aged care facilities (RACF).

Ostwald-like ripening in the two-dimensional clustering of passive particles induced by swimming bacteria.

Clustering passive particles by active agents is a promising route for fabrication of colloidal structures. Here, we report the dynamic clustering of micrometric beads in a suspension of motile bacteria. We characterize the coarsening dynamics for various bead sizes, surface fractions, and bacterial concentrations. We show that the time scale τ for the onset of clustering is governed by the time of first encounter of diffusing beads. At large time (t≫τ), we observe a robust cluster growth as t^{1/3}, similar to the Ostwald ripening mechanism. From bead tracking measurements, we extract the short-range bacteria-induced attractive force at the origin of this clustering.

Infinite ergodicity in generalized geometric Brownian motions with nonlinear drift.

Geometric Brownian motion is an exemplary stochastic processes obeying multiplicative noise, with widespread applications in several fields, e.g., in finance, in physics, and biology. The definition of the process depends crucially on the interpretation of the stochastic integrals which involves the discretization parameter α with 0≤α≤1, giving rise to the well-known special cases α=0 (Itô), α=1/2 (Fisk-Stratonovich), and α=1 (Hänggi-Klimontovich or anti-Itô). In this paper we study the asymptotic limits of the probability distribution functions of geometric Brownian motion and some related generalizations. We establish the conditions for the existence of normalizable asymptotic distributions depending on the discretization parameter α. Using the infinite ergodicity approach, recently applied to stochastic processes with multiplicative noise by E. Barkai and collaborators, we show how meaningful asymptotic results can be formulated in a transparent way.

Gutzwiller approximation for indistinguishable interacting Brownian particles on a lattice.

Nonequilibrium Brownian systems can be described using a creation and annihilation operator formalism for classical indistinguishable particles. This formalism has recently been used to derive a many-body master equation for Brownian particles on a lattice with interactions of arbitrary strength and range. One advantage of this formalism is the possibility of using solution methods for analogous many-body quantum systems. In this paper, we adapt the Gutzwiller approximation for the quantum Bose-Hubbard model to the many-body master equation for interacting Brownian particles in a lattice in the large-particle limit. Using the adapted Gutzwiller approximation, we numerically explore the complex behavior of nonequilibrium steady-state drift and number fluctuations throughout the full range of interaction strengths and densities for on-site and nearest-neighbor interactions.

Reply to "Comment on 'Explaining the specific heat of liquids based on instantaneous normal modes'".

We reply to the Comment by Schirmacher et al. [Phys. Rev. E, 106, 066101 (2022)PREHBM2470-004510.1103/PhysRevE.106.066101]. We disagree that the heat capacity of liquids is not a mystery since a widely accepted theoretical derivation based on simple physical assumptions is still missing. We also disagree about the lack of evidence for a linear in frequency scaling of the liquid density of states, which is indeed reported in uncountable simulations and recently also in experiments. We emphasize that our theoretical derivation does not assume any Debye density of states. We agree that such an assumption would be incorrect. Finally, we remark that the Bose-Einstein distribution naturally tends to the Boltzmann distribution in the classical limit, which makes our results valid also for classical liquids. We hope that this scientific exchange will bring more attention to the description of the vibrational density of states and thermodynamics of liquids, which still present many open puzzles.

Compressible lattice Boltzmann method with rotating overset grids.

The numerical instability of the lattice Boltzmann method (LBM) at high Mach or high Reynolds number flow is well identified, and it remains a major barrier to its application in more complex configurations such as moving geometries. This work combines the compressible lattice Boltzmann model with rotating overset grids (the so-called Chimera method, sliding mesh, or moving reference frame) for high Mach flows. This paper proposes to use the compressible hybrid recursive regularized collision model with fictitious forces (or inertial forces) in a noninertial rotating reference frame. Also, polynomial interpolations are investigated, which allow fixed inertial and rotating noninertial grids to communicate with each other. We suggest a way to effectively couple the LBM with the MUSCL-Hancock scheme in the rotating grid, which is needed to account for thermal effect of compressible flow. As a result, this approach is demonstrated to have an extended Mach stability limit for the rotating grid. It also demonstrates that this complex LBM scheme can maintain the second-order accuracy of the classic LBM by appropriately using numerical methods like polynomial interpolations and the MUSCL-Hancock scheme. Furthermore, the method shows a very good agreement on aerodynamic coefficients compared to experiments and the conventional finite-volume scheme. This work presents a thorough academic validation and error analysis of the LBM for simulating moving geometries in high Mach compressible flows.

Upper bounding the average residence times in partially observed steady-state Markov jump processes.

Several types of stochastic dynamics can be modeled as a continuous-time Markov jump process among a finite number of sites. Within such framework, we face the problem of getting an upper bound on the average residence time of the system in a given site β (i.e., the average lifetime of the site) if what we can observe is only the permanence of the system in an adjacent site α and the occurrence of the transitions α→β. Supposing to have a long time record of this partial monitoring of the network under steady-state conditions, we show that an upper bound on the average time spent in the unobserved site can indeed be given. The bound is formally proved, tested by means of simulations, and illustrated for a multicyclic enzymatic reaction scheme.

Herding of proteins by the ends of shrinking polymers.

The control of biopolymer length is mediated by proteins that localize to polymer ends and regulate polymerization dynamics. Several mechanisms have been proposed to achieve end localization. Here, we propose a novel mechanism by which a protein that binds to a shrinking polymer and slows its shrinkage will be spontaneously enriched at the shrinking end through a "herding" effect. We formalize this process using both lattice-gas and continuum descriptions, and we present experimental evidence that the microtubule regulator spastin employs this mechanism. Our findings extend to more general problems involving diffusion within shrinking domains.

Analytical potential formulae and fast algorithm for a horn torus resistor network.

In this paper, a (u+1)×v horn torus resistor network with a special boundary is researched. According to Kirchhoff's law and the recursion-transform method, a model of the resistor network is established by the voltage V and a perturbed tridiagonal Toeplitz matrix. We obtain the exact potential formula of a horn torus resistor network. First, the orthogonal matrix transformation is constructed to obtain the eigenvalues and eigenvectors of this perturbed tridiagonal Toeplitz matrix; second, the solution of the node voltage is given by using the famous fifth kind of discrete sine transform (DST-V). We introduce Chebyshev polynomials to represent the exact potential formula. In addition, the equivalent resistance formulae in special cases are given and displayed by a three-dimensional dynamic view. Finally, a fast algorithm of computing potential is proposed by using the mathematical model, famous DST-V, and fast matrix-vector multiplication. The exact potential formula and the proposed fast algorithm realize large-scale fast and efficient operation for a (u+1)×v horn torus resistor network, respectively.

Non-Brownian diffusion and chaotic rheology of autophoretic disks.

The dynamics of a two-dimensional autophoretic disk is quantified as a minimal model for the chaotic trajectories undertaken by active droplets. Via direct numerical simulations, we show that the mean-square displacement of the disk in a quiescent fluid is linear at long times. Surprisingly, however, this apparently diffusive behavior is non-Brownian, owing to strong cross correlations in the displacement tensor. The effect of a shear flow field on the chaotic motion of an autophoretic disk is examined. Here, the stresslet on the disk is chaotic for weak shear flows; a dilute suspension of such disks would exhibit a chaotic shear rheology. This chaotic rheology is quenched first into a periodic state and ultimately a steady state as the flow strength is increased.

Roughening of two-dimensional interfaces in nonequilibrium phase-separated systems.

I show that nonequilibrium two-dimensional interfaces between three-dimensional phase separated fluids exhibit a peculiar "sublogarithmic" roughness. Specifically, an interface of lateral extent L will fluctuate vertically (i.e., normal to the mean surface orientation) a typical rms distance w≡sqrt[〈|h(r,t)|^{2}〉]∝[ln(L/a)]^{1/3} [where a is a microscopic length, and h(r,t) is the height of the interface at two-dimensional position r at time t]. In contrast, the roughness of equilibrium two-dimensional interfaces between three-dimensional fluids, obeys w∝[ln(L/a)]^{1/2}. The exponent 1/3 for the active case is exact. In addition, the characteristic timescales τ(L) in the active case scale according to τ(L)∝L^{3}[ln(L/a)]^{1/3}, in contrast to the simple τ(L)∝L^{3} scaling found in equilibrium systems with conserved densities and no fluid flow.

Nonergodic Brownian oscillator: High-frequency response.

We consider a Brownian oscillator whose coupling to the environment may lead to the formation of a localized normal mode. For lower values of the oscillator's natural frequency ω≤ω_{c}, the localized mode is absent and the unperturbed oscillator reaches thermal equilibrium. For higher values of ω>ω_{c} when the localized mode is formed, the unperturbed oscillator does not thermalize but rather evolves into a nonequilibrium cyclostationary state. We consider the response of such an oscillator to an external periodic force. Despite the coupling to the environment, the oscillator shows the unbounded resonance (with the response linearly increasing with time) when the frequency of the external force coincides with the frequency of the localized mode. An unusual resonance ("quasiresonance") occurs for the oscillator with the critical value of the natural frequency ω=ω_{c}, which separates thermalizing (ergodic) and nonthermalizing (nonergodic) configurations. In that case, the resonance response increases with time sublinearly, which can be interpreted as a resonance between the external force and the incipient localized mode.

Thermophoretic motion of a charged single colloidal particle.

We calculate the thermophoretic drift of a charged single colloidal particle with hydrodynamically slipping surface immersed in an electrolyte solution in response to a small temperature gradient. Here we rely on a linearized hydrodynamic approach for the fluid flow and the motion of the electrolyte ions while keeping the full nonlinearity of the Poisson-Boltzmann equation of the unperturbed system to account for possible large surface charging. The partial differential equations are transformed into a coupled set of ordinary differential equations in linear response. Numerical solutions are elaborated for parameter regimes of small and large Debye shielding and different hydrodynamic boundary conditions encoded in a varying slip length. Our results are in good agreement with predictions from recent theoretical work and successfully describe experimental observations on thermophoresis of DNA. We also compare our numerical results with experimental data on polystyrene beads.

Percolation transitions of confinement-induced layering and intralayer structural orders in three-dimensional Yukawa liquids.

The disorder-order transitions of layering and intralayer structural orders of three-dimensional Yukawa liquids, under the enhanced confinement effect with decreasing normal distance z to the confinement boundary, is investigated numerically. The liquid between the two flat boundaries is segmented into many slabs parallel to the boundary, with the same slab width as the layer width. In each slab, particle sites are binarized into sites with layering order (LOSs)/ layering disorder (LDSs) and with intralayer structural order (SOSs)/disorder (SDSs). It is found that with decreasing z, a small fraction of LOSs starts to heterogeneously emerge in the form of small clusters in the slab, followed by the emergence of the large percolating LOS clusters spanning over the system. The smooth rapid rise of the fraction of LOSs from small values followed by their gradual saturations, and the scaling behavior of multiscale LOS clustering, are similar to those of the nonequilibrium systems governed by the percolation theory. The disorder-order transition of intraslab structural ordering also exhibits a similar generic behavior as that of layering with the same transition slab number. The spatial fluctuations of local layering order and local intralayer structural order are uncorrelated in the bulk liquid and the outmost layer next to the boundary. Approaching the percolating transition slab, their correlation gradually increases to the maximum.

Many universality classes in an interface model restricted to non-negative heights.

We present a simple one-dimensional stochastic model with three control parameters and a surprisingly rich zoo of phase transitions. At each (discrete) site x and time t, an integer n(x,t) satisfies a linear interface equation with added random noise. Depending on the control parameters, this noise may or may not satisfy the detailed balance condition, so that the growing interfaces are in the Edwards-Wilkinson or in the Kardar-Parisi-Zhang universality class. In addition, there is also a constraint n(x,t)≥0. Points x where n>0 on one side and n=0 on the other are called "fronts." These fronts can be "pushed" or "pulled," depending on the control parameters. For pulled fronts, the lateral spreading is in the directed percolation (DP) universality class, while it is in a different universality class for pushed fronts, and another universality class in between. In the DP case, the activity at each active site can in general be arbitrarily large, in contrast to previous realizations of DP. Finally, we find two different types of transitions when the interface detaches from the line n=0 (with 〈n(x,t)〉→const on one side, and →∞ on the other), again with new universality classes. We also discuss a mapping of this model to the avalanche propagation in a directed Oslo rice pile model in specially prepared backgrounds.

Computational study of the role of counterions and solvent dielectric in determining the conductance of B-DNA.

DNA naturally exists in a solvent environment, comprising water and salt molecules such as sodium, potassium, magnesium, etc. Along with the sequence, the solvent conditions become a vital factor determining DNA structure and thus its conductance. Over the last two decades, researchers have measured DNA conductivity both in hydrated and almost dry (dehydrated) conditions. However, due to experimental limitations (the precise control of the environment), it is very difficult to analyze the conductance results in terms of individual contributions of the environment. Therefore, modeling studies can help us to gain a valuable understanding of various factors playing a role in charge transport phenomena. DNA naturally has negative charges located at the phosphate groups in the backbone, which provides both the connections between the base pairs and the structural support for the double helix. Positively charged ions such as the sodium ion (Na^{+}), one of the most commonly used counterions, balance the negative charges at the backbone. This modeling study investigates the role of counterions both with and without the solvent (water) environment in charge transport through double-stranded DNA. Our computational experiments show that in dry DNA, the presence of counterions affects electron transmission at the lowest unoccupied molecular orbital energies. However, in solution, the counterions have a negligible role in transmission. Using the polarizable continuum model calculations, we demonstrate that the transmission is significantly higher at both the highest occupied and lowest unoccupied molecular orbital energies in a water environment as opposed to in a dry one. Moreover, calculations also show that the energy levels of neighboring bases are more closely aligned to ease electron flow in the solution.

Longitudinal and transverse modes of temperature-modulated inclined layer convection.

A parametric instability of an incompressible, viscous, and Boussinesq fluid layer bounded between two parallel planes is investigated numerically. The layer is assumed to be inclined at an angle with the horizontal. The planes bounding the layer are subjected to a time-periodic heating. Above a threshold value, the temperature gradient across the layer leads to an instability of an initially quiescent state or a parallel flow, depending upon the angle of inclination. Floquet analysis of the underlying system reveals that under modulation, the instability sets in as a convective-roll pattern executing harmonic or subharmonic temporal oscillations, depending upon the modulation, the angle of inclination, and the Prandtl number of the fluid. Under modulation, the onset of the instability is in the form of one of two spatial modes: the longitudinal mode and the transverse mode. The value of the angle of inclination for the codimension-2 point is found to be a function of the amplitude and the frequency of modulation. Furthermore, the temporal response is harmonic, or subharmonic, or bicritical depending upon the modulation. The temperature modulation offers good control of time-periodic heat and mass transfer in the inclined layer convection.

Spatially extended dislocations produced by the dispersive Swift-Hohenberg equation.

Motivated by previous results showing that the addition of a linear dispersive term to the two-dimensional Kuramoto-Sivashinsky equation has a dramatic effect on the pattern formation, we study the Swift-Hohenberg equation with an added linear dispersive term, the dispersive Swift-Hohenberg equation (DSHE). The DSHE produces stripe patterns with spatially extended defects that we call seams. A seam is defined to be a dislocation that is smeared out along a line segment that is obliquely oriented relative to an axis of reflectional symmetry. In contrast to the dispersive Kuramoto-Sivashinsky equation, the DSHE has a narrow band of unstable wavelengths close to an instability threshold. This allows for analytical progress to be made. We show that the amplitude equation for the DSHE close to threshold is a special case of the anisotropic complex Ginzburg-Landau equation (ACGLE) and that seams in the DSHE correspond to spiral waves in the ACGLE. Seam defects and the corresponding spiral waves tend to organize themselves into chains, and we obtain formulas for the velocity of the spiral wave cores and for the spacing between them. In the limit of strong dispersion, a perturbative analysis yields a relationship between the amplitude and wavelength of a stripe pattern and its propagation velocity. Numerical integrations of the ACGLE and the DSHE confirm these analytical results.

Slow dynamics in a single bead with mechanical conditioning and transient heating.

The contact stiffness of an aluminum bead confined between two slabs diminishes upon mechanical conditioning, and then recovers as log(t) after the conditioning ceases. Here that structure is evaluated for its response to transient heating and cooling, with and without accompanying conditioning vibrations. It is found that, under heating or cooling alone, stiffness changes are mostly consistent with temperature-dependent material moduli; there is little or no slow dynamics. Hybrid tests in which vibration conditioning is followed by heating or cooling lead to recoveries that begin as log(t) and then become more complex. On subtracting the known response to heating or cooling alone we discern the influence of higher or lower temperatures on slow dynamic recovery from vibrations. It is found that heating accelerates the initial log(t) recovery, but by an amount more than predicted by an Arrhenius model of thermally activated barrier penetrations. Transient cooling has no discernible effect, in contrast to the Arrhenius prediction that it slows recovery.

Dissipative solitary waves in a two-dimensional complex plasma: Amorphous versus crystalline.

The propagation of a dissipative soliton was experimentally studied in a two-dimensional binary complex plasma. The crystallization was suppressed in the center of the particle suspension where two types of particles were mixed. The motions of individual particles were recorded using video microscopy, and the macroscopic properties of the solitons were measured in the amorphous binary mixture in the center and in the plasma crystal in the periphery. Although the overall shape and parameters of solitons propagating in amorphous and crystalline regions were quite similar, their velocity structures at small scales as well as the velocity distributions were profoundly distinct. Moreover, the local structure rearranged drastically in and behind the soliton, which was not observed in the plasma crystal. Langevin dynamics simulations were performed, and the results agreed with the experimental observations.

Physics of moderately stretched electrified jets in electrohydrodynamic jet printing.

Electrohydrodynamic (EHD) jet printing involves the deposition of a liquid jet issuing from a needle stretched under the effect of a strong electric field between the needle and a collector plate. Unlike the geometrically independent classical cone-jet observed at low flow rates and high applied electric fields, at a relatively high flow rate and moderate electric field, EHD jets are moderately stretched. Jetting characteristics of such moderately stretched EHD jets differ from the typical cone-jet due to the nonlocalized cone-to-jet transition. Hence, we describe the physics of the moderately stretched EHD jet applicable to the EHD jet printing process through numerical solutions of a quasi-one-dimensional model of the EHD jet and experiments. Through comparison with experimental measurements, we show that our simulations correctly predict the jet shape for varying flow rates and applied potential difference. We present the physical mechanism of inertia-dominated slender EHD jets based on the dominant driving and resisting forces and relevant dimensionless numbers. We show that the slender EHD jet stretches and accelerates primarily due to the balance of driving tangential electric shear and resisting inertia forces in the developed jet region, whereas in the vicinity of the needle, driving charge repulsion and resisting surface tension forces govern the cone shape. The findings of this study can help in operational understanding and better control of the EHD jet printing process.

Evidence of experimental three-wave resonant interactions between two dispersion branches.

We report the observation of nonlinear three-wave resonant interactions between two different branches of the dispersion relation of hydrodynamic waves, namely the gravity-capillary and sloshing modes. These atypical interactions are investigated within a torus of fluid for which the sloshing mode can be easily excited. A triadic resonance instability is then observed due to this three-wave two-branch interaction mechanism. An exponential growth of the instability and phase locking are evidenced. The efficiency of this interaction is found to be maximal when the gravity-capillary phase velocity matches the group velocity of the sloshing mode. For a stronger forcing, additional waves are generated by a cascade of three-wave interactions populating the wave spectrum. Such a three-wave two-branch interaction mechanism is probably not restricted to hydrodynamics and could be of interest in other systems involving several propagation modes.

Finite-temperature equilibrium density profiles of integrable systems in confining potentials.

We study the equilibrium density profile of particles in two one-dimensional classical integrable models, namely hard rods and the hyperbolic Calogero model, placed in confining potentials. For both of these models the interparticle repulsion is strong enough to prevent particle trajectories from intersecting. We use field theoretic techniques to compute the density profile and their scaling with system size and temperature, and we compare them with results from Monte Carlo simulations. In both cases we find good agreement between the field theory and simulations. We also consider the case of the Toda model in which interparticle repulsion is weak and particle trajectories can cross. In this case, we find that a field theoretic description is ill-suited and instead, in certain parameter regimes, we present an approximate Hessian theory to understand the density profile. Our work provides an analytical approach toward understanding the equilibrium properties for interacting integrable systems in confining traps.

Adaptive autoencoder latent space tuning for more robust machine learning beyond the training set for six-dimensional phase space diagnostics of a time-varying ultrafast electron-diffraction compact accelerator.

We present a general adaptive latent space tuning approach for improving the robustness of machine learning tools with respect to time variation and distribution shift. We demonstrate our approach by developing an encoder-decoder convolutional neural network-based virtual 6D phase space diagnostic of charged particle beams in the HiRES ultrafast electron diffraction (UED) compact particle accelerator with uncertainty quantification. Our method utilizes model-independent adaptive feedback to tune a low-dimensional 2D latent space representation of ∼1 million dimensional objects which are the 15 unique 2D projections (x,y),...,(z,p_{z}) of the 6D phase space (x,y,z,p_{x},p_{y},p_{z}) of the charged particle beams. We demonstrate our method with numerical studies of short electron bunches utilizing experimentally measured UED input beam distributions.

Nonequilibrium Ising model on a two-dimensional additive small-world network.

In this work, we have studied the Ising model with one- and two-spin flip competing dynamics on a two-dimensional additive small-world network (A-SWN). The system model consists of an L×L square lattice where each site of the lattice is occupied by a spin variable that interacts with the nearest-neighbor spins and it has a certain probability p of being additionally connected at random to one of its farther neighbors. The dynamics present in the system can be defined by the probability q of being in contact with a heat bath at a given temperature T and, at the same time, with a probability of (1-q) the system is subjected to an external flux of energy into the system. The contact with the heat bath is simulated by one-spin flip according to the Metropolis prescription, while the input of energy is mimicked by the two-spin flip process, involving a simultaneous flipping of a pair of neighboring spins. We have employed Monte Carlo simulations to obtain the thermodynamic quantities of the system, such as the total m_{L}^{F} and staggered m_{L}^{AF} magnetizations per spin, the susceptibility χ_{L}, and the reduced fourth-order Binder cumulant U_{L}. We have built the phase diagram for the stationary states of the model in the plane T versus q, showing the existence of two continuous transition lines for each value of p: one line between the ferromagnetic F and paramagnetic P phases and the other line between the P and antiferromagnetic AF phases. Therefore, we have shown that the phase diagram topology changes when p increases. Using the finite-size scaling analysis, we also obtained the critical exponents for the system, where, varying the parameter p, we have observed a different universality class from the Ising model in the regular square lattice to the A-SWN.

Theory of the asynchronous state of structured rotator networks and its application to recurrent networks of excitatory and inhibitory units.

Recurrently coupled oscillators that are sufficiently heterogeneous and/or randomly coupled can show an asynchronous activity in which there are no significant correlations among the units of the network. The asynchronous state can nevertheless exhibit a rich temporal correlation statistics that is generally difficult to capture theoretically. For randomly coupled rotator networks, it is possible to derive differential equations that determine the autocorrelation functions of the network noise and of the single elements in the network. So far, the theory has been restricted to statistically homogeneous networks, making it difficult to apply this framework to real-world networks, which are structured with respect to the properties of the single units and their connectivity. A particularly striking case are neural networks for which one has to distinguish between excitatory and inhibitory neurons, which drive their target neurons towards or away from the firing threshold. To take into account network structures like that, here we extend the theory for rotator networks to the case of multiple populations. Specifically, we derive a system of differential equations that govern the self-consistent autocorrelation functions of the network fluctuations in the respective populations. We then apply this general theory to the special but important case of recurrent networks of excitatory and inhibitory units in the balanced case and compare our theory to numerical simulations. We inspect the effect of the network structure on the noise statistics by comparing our results to the case of an equivalent homogeneous network devoid of internal structure. Our results show that structured connectivity and heterogeneity of the oscillator type can both enhance or reduce the overall strength of the generated network noise and shape its temporal correlations.

Instabilities of a Bose-Einstein condensate with mixed nonlinear and linear lattices.

Bose-Einstein condensates (BECs) in periodic potentials generate interesting physics on the instabilities of Bloch states. The lowest-energy Bloch states of BECs in pure nonlinear lattices are dynamically and Landau unstable, which breaks down BEC superfluidity. In this paper we propose to use an out-of-phase linear lattice to stabilize them. The stabilization mechanism is revealed by the averaged interaction. We further incorporate a constant interaction into BECs with mixed nonlinear and linear lattices and reveal its effect on the instabilities of Bloch states in the lowest band.

Relation between the degree and betweenness centrality distribution in complex networks.

The centrality measures, like betweenness b and degree k in complex networks remain fundamental quantities helping to classify them. It is realized from Barthelemy's paper [Eur. Phys. J. B 38, 163 (2004)10.1140/epjb/e2004-00111-4] that the maximal b-k exponent for the scale-free (SF) networks is η_{max}=2, belonging to SF trees, based on which one concludes δ≥γ+1/2, where γ and δ are the scaling exponents for the distribution functions of the degree and the betweenness centralities, respectively. This conjecture was violated for some special models and systems. Here we present a systematic study on this problem for visibility graphs of correlated time series, and show evidence that this conjecture fails in some correlation strengths. We consider the visibility graph of three models: two-dimensional Bak-Tang-Weisenfeld (BTW) sandpile model, one-dimensional (1D) fractional Brownian motion (FBM), and 1D Levy walks, the two latter cases are controlled by the Hurst exponent H and the step index α, respectively. In particular, for the BTW model and FBM with H≲0.5, η is greater than 2, and also δ<γ+1/2 for the BTW model, while the Barthelemy's conjecture remains valid for the Levy process. We assert that the failure of the Barthelemy's conjecture is due to large fluctuations in the scaling b-k relation resulting in the violation of hyperscaling relation η=γ-1/δ-1 and emergent anomalous behavior for the BTW model and FBM. Universal distribution function of generalized degree is found for these models which have the same scaling behavior as the Barabasi-Albert network.

Cement-In-Cement All-Polyethylene Tibial Revision: A Report of 3 Cases.

Debonding of the tibial component of total knee arthroplasty is a known complication that is typically treated with revision surgery, most commonly revision to a metal-backed tibial component with or without stems. Here, we present 3 cases of tibial component debonding revised to all-polyethylene tibial components with a cement-in-cement technique.