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The dataset generation failed because of a cast error
Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 25 new columns ({'v', 'showprefixforinfo', 'logtostderr', 'split_prop', 'helpfull', 'help', 'only_check_args', 'profile_file', '?', 'helpxml', 'helpshort', 'run_with_profiling', 'log_dir', 'graph_file', 'output_dir', 'alsologtostderr', 'seed', 'split_depth', 'verbosity', 'run_with_pdb', 'stderrthreshold', 'pdb', 'logger_levels', 'pdb_post_mortem', 'use_cprofile_for_profiling'}) and 5 missing columns ({'links', 'multigraph', 'nodes', 'directed', 'graph'}).

This happened while the json dataset builder was generating data using

hf://datasets/andylolu24/wiki-ol/train_eval_split/train_test_split_flags.json (at revision f5e403e056eb39173b37ec494f14bbd7ffaf021c)

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1870, in _prepare_split_single
                  writer.write_table(table)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 622, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2292, in table_cast
                  return cast_table_to_schema(table, schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2240, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              logtostderr: bool
              alsologtostderr: bool
              log_dir: string
              v: int64
              verbosity: int64
              logger_levels: struct<>
              stderrthreshold: string
              showprefixforinfo: bool
              run_with_pdb: bool
              pdb_post_mortem: bool
              pdb: bool
              run_with_profiling: bool
              profile_file: null
              use_cprofile_for_profiling: bool
              only_check_args: bool
              graph_file: string
              output_dir: string
              split_depth: int64
              split_prop: double
              seed: int64
              ?: bool
              help: bool
              helpshort: bool
              helpfull: bool
              helpxml: bool
              to
              {'directed': Value(dtype='bool', id=None), 'multigraph': Value(dtype='bool', id=None), 'graph': {'root': Value(dtype='int64', id=None)}, 'nodes': [{'title': Value(dtype='string', id=None), 'pages': [{'id': Value(dtype='int64', id=None), 'title': Value(dtype='string', id=None), 'abstract': Value(dtype='string', id=None)}], 'id': Value(dtype='int64', id=None)}], 'links': [{'source': Value(dtype='int64', id=None), 'target': Value(dtype='int64', id=None)}]}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1412, in compute_config_parquet_and_info_response
                  parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 988, in stream_convert_to_parquet
                  builder._prepare_split(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1741, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1872, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 25 new columns ({'v', 'showprefixforinfo', 'logtostderr', 'split_prop', 'helpfull', 'help', 'only_check_args', 'profile_file', '?', 'helpxml', 'helpshort', 'run_with_profiling', 'log_dir', 'graph_file', 'output_dir', 'alsologtostderr', 'seed', 'split_depth', 'verbosity', 'run_with_pdb', 'stderrthreshold', 'pdb', 'logger_levels', 'pdb_post_mortem', 'use_cprofile_for_profiling'}) and 5 missing columns ({'links', 'multigraph', 'nodes', 'directed', 'graph'}).
              
              This happened while the json dataset builder was generating data using
              
              hf://datasets/andylolu24/wiki-ol/train_eval_split/train_test_split_flags.json (at revision f5e403e056eb39173b37ec494f14bbd7ffaf021c)
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)

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directed
bool
multigraph
bool
graph
dict
nodes
list
links
list
logtostderr
bool
alsologtostderr
bool
log_dir
string
v
int64
verbosity
int64
logger_levels
dict
stderrthreshold
string
showprefixforinfo
bool
run_with_pdb
bool
pdb_post_mortem
bool
pdb
bool
run_with_profiling
bool
profile_file
null
use_cprofile_for_profiling
bool
only_check_args
bool
graph_file
string
output_dir
string
split_depth
int64
split_prop
float64
seed
int64
?
bool
help
bool
helpshort
bool
helpfull
bool
helpxml
bool
true
false
{ "root": 7345184 }
[{"title":"Anti-torture laws","pages":[{"id":1292624,"title":"Istanbul Protocol","abstract":"The Man(...TRUNCATED)
[{"source":11034627,"target":14236835},{"source":4595727,"target":1215289},{"source":8175652,"target(...TRUNCATED)
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null
null
null
null
null
null
null
true
false
{ "root": 7345184 }
[{"title":"Economic impact of the COVID-19 pandemic","pages":[{"id":63926963,"title":"Economic impac(...TRUNCATED)
[{"source":19169336,"target":1475382},{"source":42631223,"target":37579209},{"source":58425407,"targ(...TRUNCATED)
null
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null
null
null
null
null
null
false
false
1
1
{}
info
true
false
false
false
false
null
true
false
out/data/wikipedia/v2/train_test_split/train_graph.json
out/data/wikipedia/v2/train_eval_split
1
0.3
0
false
false
false
false
false
true
false
{ "root": 7345184 }
[{"title":"Upper houses","pages":[{"id":538644,"title":"Upper house","abstract":"An upper house is o(...TRUNCATED)
[{"source":10158091,"target":69275919},{"source":10158091,"target":53263803},{"source":28082200,"tar(...TRUNCATED)
null
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null
null
null
null
null
null
null
null
null
null
null
null
null
true
false
{ "root": 7345184 }
[{"title":"Economic impact of the COVID-19 pandemic","pages":[{"id":63926963,"title":"Economic impac(...TRUNCATED)
[{"source":64946193,"target":63443082},{"source":32669751,"target":30579194},{"source":19169336,"tar(...TRUNCATED)
null
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null
null
null
null
null
null
null
false
false
1
1
{}
info
true
false
false
false
false
null
true
false
out/data/wikipedia/v2/full/graph_depth_3.json
out/data/wikipedia/v2/train_test_split
1
0.5
null
false
false
false
false
false

Wikipedia dataset from OLLM

Repository: https://github.com/andylolu2/ollm

  • Train graph: train_eval_split/train_graph.json
  • Validation graph: train_eval_split/test_graph.json
  • Test graph: train_test_split/test_graph.json

Load the graph with networkx:

import networkx as nx

with open(path_to_graph, "r") as f:
    G = nx.node_link_graph(json.load(f), edges="links")
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