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NC(=O)c1sc2nc(-c3ccc(O)cc3)ccc2c1N
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Cc1ccc2c(N)nc(-c3ccccc3C)cc2c1
COc1ccc(-c2onc3c2CCc2c-3[nH]c3ccc(C)cc23)cc1Br
COc1ccc([C@@H]2c3c(OC)cc(OC)cc3C(O)[C@H]2c2cc(OC)cc(OC)c2)cc1
c1ccc(Oc2ncccc2C2CCNCC2)cc1
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CC(=O)NC(c1nnc(CNC(=O)OC(C)(C)C)o1)c1nc2ccc(-c3ccccc3)cc2s1
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COc1ccc(-c2nc(/C=C3\NC(=O)CS3)sc2CC(=O)O)cc1
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CCc1sc(/C=C2\NC(=O)CS2)nc1-c1ccccc1
NC(=O)c1cc(-c2ccc(F)cc2)c2ccc(C(=O)N3CCOCC3)cc2n1
CNc1nc(C)c(-c2nc(Nc3cccc(N4CCNCC4)c3)ncc2C#N)s1
CN1OC2(N=C1N)c1cc(-c3cccnn3)ccc1CC21CCc2ccccc2CC1
COc1cc(CN2CCC(NC(=O)c3ccc(Cl)cc3Cl)CC2)cc(OC)c1
CCC(C(=O)O)N1Cc2sc(-c3ccc(-c4cccnc4)cc3)cc2S1(=O)=O
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CC(Cc1cccc(C(F)(F)F)c1)NCC=C(c1ccc(F)cc1)c1ccc(F)cc1
COc1cccc(OC)c1C1CCCCC(=O)N1Cc1cccc2ccccc12
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CNc1nc(C)c(-c2nc(Nc3cccc(N4CCNCC4)c3)ncc2Cl)s1
Oc1ccc2c(c1)[C@]13CCCCC1[C@H](C2)N(CC1CCC1)CC3
CCOc1ccccc1-c1cncc(C(CC(=O)O)c2nnc(C)o2)c1
Fc1ccc(C(SCCN2CCN(Cc3ccccc3)CC2)c2ccc(F)cc2)cc1
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OC(COc1cccc(-c2cccc(Cl)c2)c1)CN1CCc2ccccc2C1
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CC[C@H](C)[C@H](NC(=O)[C@H](C)NC(=O)[C@@H](NC(=O)[C@@H](N)CCCCN)[C@@H](C)O)C(=O)N[C@@H](C)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@@H](CO)C(=O)N[C@@H](CCC(=O)O)C(=O)O)[C@@H](C)O)[C@@H](C)CC)[C@@H](C)O)C(C)C)[C@@H](C)O
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YAML Metadata Warning: empty or missing yaml metadata in repo card (https://huggingface.co/docs/hub/datasets-cards)

ChEMBL Molecule Generation Dataset

Dataset Description

ChEMBL is a manually curated database of bioactive molecules with drug-like properties. It brings together chemical, bioactivity and genomic data to aid the translation of genomic information into effective new drugs.

Task Description

For both distribution learning-based and goal-oriented molecule generation. That is to generate new molecules that has desirable properties measured by some oracles.

Dataset Statistics

1,941,405 molecules, including:

  • 1,358,980 in train
  • 194,123 in validation
  • 388,302 in test

The random split has been made by Therapeutics Data Commons and the missing values have been removed.

References

[1] Mendez, David, et al. “ChEMBL: towards direct deposition of bioassay data.” Nucleic acids research 47.D1 (2019): D930-D940.

[2] Davies, Mark, et al. “ChEMBL web services: streamlining access to drug discovery data and utilities.” Nucleic acids research 43.W1 (2015): W612-W620.

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