arjundd/meddlr-data · Datasets at Hugging Face

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[01/08 07:38:23] mr.utils.events INFO: eta: 0:05:51 iter: 59 loss: 27504.994 total_loss: 27504.994 time: 0.2283 data_time: 0.0001 lr: 0.000006 max_mem: 2468M
[01/08 07:38:28] mr.utils.events INFO: eta: 0:05:47 iter: 79 loss: 24592.978 total_loss: 24592.978 time: 0.2288 data_time: 0.0001 lr: 0.000008 max_mem: 2468M
[01/08 07:38:34] mr.utils.events INFO: eta: 0:05:43 iter: 99 loss: 24272.967 total_loss: 24272.967 time: 0.2399 data_time: 0.0528 lr: 0.000010 max_mem: 2468M
[01/08 07:38:39] mr.utils.events INFO: eta: 0:05:39 iter: 119 loss: 21447.893 total_loss: 21447.893 time: 0.2385 data_time: 0.0001 lr: 0.000012 max_mem: 2468M
[01/08 07:38:44] mr.utils.events INFO: eta: 0:05:35 iter: 139 loss: 21284.981 total_loss: 21284.981 time: 0.2376 data_time: 0.0001 lr: 0.000014 max_mem: 2468M
[01/08 07:38:49] mr.utils.events INFO: eta: 0:05:31 iter: 159 loss: 22184.024 total_loss: 22184.024 time: 0.2369 data_time: 0.0001 lr: 0.000016 max_mem: 2468M
[01/08 07:38:55] mr.utils.events INFO: eta: 0:05:27 iter: 179 loss: 20008.485 total_loss: 20008.485 time: 0.2365 data_time: 0.0001 lr: 0.000018 max_mem: 2468M
[01/08 07:39:00] fvcore.common.checkpoint INFO: Saving checkpoint to /bmrNAS/people/arjun/results/meddlr/tests/basic/model_0000199.pth
[01/08 07:39:01] mr.data.datasets.register_mrco INFO: Loading /bmrNAS/people/arjun/code/meddlr/annotations/mridata_knee_2019/val.json takes 0.07 seconds
[01/08 07:39:01] mr.data.build INFO: Dropped 0 scans. 2 scans remaining
[01/08 07:39:01] mr.data.build INFO: Dropped references for 0/2 scans. 2 scans with reference remaining
[01/08 07:39:01] mr.evaluation.evaluator INFO: Start inference on 320 batches
[01/08 07:39:05] mr.evaluation.evaluator INFO: Inference done 11/320. 0.0258 s / img. ETA=0:00:46
[01/08 07:39:10] mr.evaluation.evaluator INFO: Inference done 44/320. 0.0238 s / img. ETA=0:00:41
[01/08 07:39:15] mr.evaluation.evaluator INFO: Inference done 77/320. 0.0229 s / img. ETA=0:00:36
[01/08 07:39:20] mr.evaluation.evaluator INFO: Inference done 110/320. 0.0226 s / img. ETA=0:00:31
[01/08 07:39:25] mr.evaluation.evaluator INFO: Inference done 143/320. 0.0224 s / img. ETA=0:00:26
[01/08 07:39:30] mr.evaluation.evaluator INFO: Inference done 176/320. 0.0223 s / img. ETA=0:00:21
[01/08 07:39:35] mr.evaluation.evaluator INFO: Inference done 209/320. 0.0222 s / img. ETA=0:00:16
[01/08 07:39:40] mr.evaluation.evaluator INFO: Inference done 237/320. 0.0221 s / img. ETA=0:00:12
[01/08 07:39:45] mr.evaluation.evaluator INFO: Inference done 270/320. 0.0221 s / img. ETA=0:00:07
[01/08 07:39:50] mr.evaluation.evaluator INFO: Inference done 303/320. 0.0220 s / img. ETA=0:00:02
[01/08 07:39:53] mr.evaluation.evaluator INFO: Total inference time: 0:00:48.855011 (0.155095 s / batch on 1 devices)
[01/08 07:39:53] mr.evaluation.evaluator INFO: Total inference pure compute time: 0:00:06 (0.021862 s / batch on 1 devices)
[01/08 07:40:03] mr.evaluation.scan_evaluator INFO: Structuring slices into volumes...
[01/08 07:40:03] mr.evaluation.scan_evaluator INFO: Structuring slices into volumes...
[01/08 07:40:06] mr.evaluation.recon_evaluation INFO: [ReconEvaluator] Slice metrics summary:
channel_0
--------------- --------------
val_nrmse 0.211 (0.055)
val_nrmse_mag 0.140 (0.033)
val_psnr 31.509 (2.961)
val_psnr_mag 35.018 (2.864)
val_ssim (Wang) 0.831 (0.090)

[01/08 07:40:06] mr.evaluation.recon_evaluation INFO: [ReconEvaluator] Scan metrics summary:
channel_0
-------------------- --------------
val_nrmse_mag_scan 0.131 (0.007)
val_nrmse_scan 0.195 (0.012)
val_psnr_mag_scan 42.912 (0.363)
val_psnr_scan 39.450 (0.290)
val_ssim (Wang)_scan 0.957 (0.003)

[01/08 07:40:06] mr.evaluation.evaluator INFO: Evaluation Time: 13.612028 s
[01/08 07:40:06] mr.engine.trainer INFO: Evaluation results for mridata_knee_2019_val in csv format:
[01/08 07:40:06] mr.evaluation.testing INFO: copypaste: val_nrmse,val_nrmse_mag,val_psnr,val_psnr_mag,val_ssim (Wang),val_nrmse_mag_scan,val_nrmse_scan,val_psnr_mag_scan,val_psnr_scan,val_ssim (Wang)_scan
[01/08 07:40:06] mr.evaluation.testing INFO: copypaste: 0.2112,0.1404,31.5090,35.0178,0.8314,0.1310,0.1952,42.9119,39.4501,0.9571
[01/08 07:40:06] mr.evaluation.testing INFO: Metrics (comma delimited):
val_nrmse,val_nrmse_mag,val_psnr,val_psnr_mag,val_ssim (Wang),val_nrmse_mag_scan,val_nrmse_scan,val_psnr_mag_scan,val_psnr_scan,val_ssim (Wang)_scan
0.2112,0.1404,31.5090,35.0178,0.8314,0.1310,0.1952,42.9119,39.4501,0.9571
[01/08 07:40:06] mr.utils.events INFO: eta: 0:13:01 iter: 199 loss: 18439.461 total_loss: 18439.461 time: 0.2363 data_time: 0.0001 lr: 0.000020 max_mem: 4234M
[01/08 07:40:12] mr.utils.events INFO: eta: 0:12:57 iter: 219 loss: 17119.530 total_loss: 17119.530 time: 0.2367 data_time: 0.0001 lr: 0.000022 max_mem: 4234M
[01/08 07:40:17] mr.utils.events INFO: eta: 0:12:53 iter: 239 loss: 16810.184 total_loss: 16810.184 time: 0.2394 data_time: 0.0279 lr: 0.000024 max_mem: 4234M
[01/08 07:40:22] mr.utils.events INFO: eta: 0:12:49 iter: 259 loss: 15697.525 total_loss: 15697.525 time: 0.2395 data_time: 0.0001 lr: 0.000026 max_mem: 4234M
[01/08 07:40:28] mr.utils.events INFO: eta: 0:12:45 iter: 279 loss: 16743.501 total_loss: 16743.501 time: 0.2393 data_time: 0.0001 lr: 0.000028 max_mem: 4234M
[01/08 07:40:33] mr.utils.events INFO: eta: 0:12:40 iter: 299 loss: 18045.708 total_loss: 18045.708 time: 0.2392 data_time: 0.0013 lr: 0.000030 max_mem: 4234M
[01/08 07:40:39] mr.utils.events INFO: eta: 0:12:36 iter: 319 loss: 16170.239 total_loss: 16170.239 time: 0.2392 data_time: 0.0001 lr: 0.000032 max_mem: 4234M
[01/08 07:40:45] mr.utils.events INFO: eta: 0:12:32 iter: 339 loss: 16581.456 total_loss: 16581.456 time: 0.2412 data_time: 0.0363 lr: 0.000034 max_mem: 4234M
[01/08 07:40:50] mr.utils.events INFO: eta: 0:12:28 iter: 359 loss: 17071.639 total_loss: 17071.639 time: 0.2411 data_time: 0.0001 lr: 0.000036 max_mem: 4234M
[01/08 07:40:56] mr.utils.events INFO: eta: 0:12:25 iter: 379 loss: 16226.621 total_loss: 16226.621 time: 0.2411 data_time: 0.0001 lr: 0.000038 max_mem: 4234M
[01/08 07:41:01] fvcore.common.checkpoint INFO: Saving checkpoint to /bmrNAS/people/arjun/results/meddlr/tests/basic/model_0000399.pth
[01/08 07:41:02] mr.data.datasets.register_mrco INFO: Loading /bmrNAS/people/arjun/code/meddlr/annotations/mridata_knee_2019/val.json takes 0.00 seconds
[01/08 07:41:02] mr.data.build INFO: Dropped 0 scans. 2 scans remaining
[01/08 07:41:02] mr.data.build INFO: Dropped references for 0/2 scans. 2 scans with reference remaining
[01/08 07:41:02] mr.evaluation.evaluator INFO: Start inference on 320 batches
[01/08 07:41:06] mr.evaluation.evaluator INFO: Inference done 11/320. 0.0223 s / img. ETA=0:00:47
[01/08 07:41:11] mr.evaluation.evaluator INFO: Inference done 44/320. 0.0222 s / img. ETA=0:00:42
[01/08 07:41:16] mr.evaluation.evaluator INFO: Inference done 77/320. 0.0221 s / img. ETA=0:00:37
[01/08 07:41:21] mr.evaluation.evaluator INFO: Inference done 110/320. 0.0221 s / img. ETA=0:00:32
[01/08 07:41:27] mr.evaluation.evaluator INFO: Inference done 143/320. 0.0221 s / img. ETA=0:00:27
[01/08 07:41:32] mr.evaluation.evaluator INFO: Inference done 176/320. 0.0221 s / img. ETA=0:00:22
[01/08 07:41:37] mr.evaluation.evaluator INFO: Inference done 209/320. 0.0221 s / img. ETA=0:00:17
[01/08 07:41:42] mr.evaluation.evaluator INFO: Inference done 242/320. 0.0221 s / img. ETA=0:00:12
[01/08 07:41:47] mr.evaluation.evaluator INFO: Inference done 275/320. 0.0221 s / img. ETA=0:00:06
[01/08 07:41:52] mr.evaluation.evaluator INFO: Inference done 308/320. 0.0221 s / img. ETA=0:00:01
[01/08 07:41:54] mr.evaluation.evaluator INFO: Total inference time: 0:00:49.053359 (0.155725 s / batch on 1 devices)
[01/08 07:41:54] mr.evaluation.evaluator INFO: Total inference pure compute time: 0:00:06 (0.021976 s / batch on 1 devices)
[01/08 07:42:04] mr.evaluation.scan_evaluator INFO: Structuring slices into volumes...
[01/08 07:42:04] mr.evaluation.scan_evaluator INFO: Structuring slices into volumes...
[01/08 07:42:07] mr.evaluation.recon_evaluation INFO: [ReconEvaluator] Slice metrics summary:
channel_0
--------------- --------------
val_nrmse 0.176 (0.045)
val_nrmse_mag 0.122 (0.030)
val_psnr 33.094 (3.019)
val_psnr_mag 36.272 (3.018)
val_ssim (Wang) 0.860 (0.080)

[01/08 07:42:07] mr.evaluation.recon_evaluation INFO: [ReconEvaluator] Scan metrics summary:
channel_0
-------------------- --------------
val_nrmse_mag_scan 0.113 (0.005)
val_nrmse_scan 0.163 (0.006)
val_psnr_mag_scan 44.208 (0.394)
val_psnr_scan 41.032 (0.507)
val_ssim (Wang)_scan 0.963 (0.002)

[01/08 07:42:07] mr.evaluation.evaluator INFO: Evaluation Time: 13.187915 s
[01/08 07:42:07] mr.engine.trainer INFO: Evaluation results for mridata_knee_2019_val in csv format:

[01/08 07:38:23] mr.utils.events INFO: eta: 0:05:51 iter: 59 loss: 27504.994 total_loss: 27504.994 time: 0.2283 data_time: 0.0001 lr: 0.000006 max_mem: 2468M

[01/08 07:38:28] mr.utils.events INFO: eta: 0:05:47 iter: 79 loss: 24592.978 total_loss: 24592.978 time: 0.2288 data_time: 0.0001 lr: 0.000008 max_mem: 2468M

[01/08 07:38:34] mr.utils.events INFO: eta: 0:05:43 iter: 99 loss: 24272.967 total_loss: 24272.967 time: 0.2399 data_time: 0.0528 lr: 0.000010 max_mem: 2468M

[01/08 07:38:39] mr.utils.events INFO: eta: 0:05:39 iter: 119 loss: 21447.893 total_loss: 21447.893 time: 0.2385 data_time: 0.0001 lr: 0.000012 max_mem: 2468M

[01/08 07:38:44] mr.utils.events INFO: eta: 0:05:35 iter: 139 loss: 21284.981 total_loss: 21284.981 time: 0.2376 data_time: 0.0001 lr: 0.000014 max_mem: 2468M

[01/08 07:38:49] mr.utils.events INFO: eta: 0:05:31 iter: 159 loss: 22184.024 total_loss: 22184.024 time: 0.2369 data_time: 0.0001 lr: 0.000016 max_mem: 2468M

[01/08 07:38:55] mr.utils.events INFO: eta: 0:05:27 iter: 179 loss: 20008.485 total_loss: 20008.485 time: 0.2365 data_time: 0.0001 lr: 0.000018 max_mem: 2468M

[01/08 07:39:00] fvcore.common.checkpoint INFO: Saving checkpoint to /bmrNAS/people/arjun/results/meddlr/tests/basic/model_0000199.pth

[01/08 07:39:01] mr.data.datasets.register_mrco INFO: Loading /bmrNAS/people/arjun/code/meddlr/annotations/mridata_knee_2019/val.json takes 0.07 seconds

[01/08 07:39:01] mr.data.build INFO: Dropped 0 scans. 2 scans remaining

[01/08 07:39:01] mr.data.build INFO: Dropped references for 0/2 scans. 2 scans with reference remaining

[01/08 07:39:01] mr.evaluation.evaluator INFO: Start inference on 320 batches

[01/08 07:39:05] mr.evaluation.evaluator INFO: Inference done 11/320. 0.0258 s / img. ETA=0:00:46

[01/08 07:39:10] mr.evaluation.evaluator INFO: Inference done 44/320. 0.0238 s / img. ETA=0:00:41

[01/08 07:39:15] mr.evaluation.evaluator INFO: Inference done 77/320. 0.0229 s / img. ETA=0:00:36

[01/08 07:39:20] mr.evaluation.evaluator INFO: Inference done 110/320. 0.0226 s / img. ETA=0:00:31

[01/08 07:39:25] mr.evaluation.evaluator INFO: Inference done 143/320. 0.0224 s / img. ETA=0:00:26

[01/08 07:39:30] mr.evaluation.evaluator INFO: Inference done 176/320. 0.0223 s / img. ETA=0:00:21

[01/08 07:39:35] mr.evaluation.evaluator INFO: Inference done 209/320. 0.0222 s / img. ETA=0:00:16

[01/08 07:39:40] mr.evaluation.evaluator INFO: Inference done 237/320. 0.0221 s / img. ETA=0:00:12

[01/08 07:39:45] mr.evaluation.evaluator INFO: Inference done 270/320. 0.0221 s / img. ETA=0:00:07

[01/08 07:39:50] mr.evaluation.evaluator INFO: Inference done 303/320. 0.0220 s / img. ETA=0:00:02

[01/08 07:39:53] mr.evaluation.evaluator INFO: Total inference time: 0:00:48.855011 (0.155095 s / batch on 1 devices)

[01/08 07:39:53] mr.evaluation.evaluator INFO: Total inference pure compute time: 0:00:06 (0.021862 s / batch on 1 devices)

[01/08 07:40:03] mr.evaluation.scan_evaluator INFO: Structuring slices into volumes...

[01/08 07:40:06] mr.evaluation.recon_evaluation INFO: [ReconEvaluator] Slice metrics summary:

channel_0

--------------- --------------

val_nrmse 0.211 (0.055)

val_nrmse_mag 0.140 (0.033)

val_psnr 31.509 (2.961)

val_psnr_mag 35.018 (2.864)

val_ssim (Wang) 0.831 (0.090)

[01/08 07:40:06] mr.evaluation.recon_evaluation INFO: [ReconEvaluator] Scan metrics summary:

channel_0

-------------------- --------------

val_nrmse_mag_scan 0.131 (0.007)

val_nrmse_scan 0.195 (0.012)

val_psnr_mag_scan 42.912 (0.363)

val_psnr_scan 39.450 (0.290)

val_ssim (Wang)_scan 0.957 (0.003)

[01/08 07:40:06] mr.evaluation.evaluator INFO: Evaluation Time: 13.612028 s

[01/08 07:40:06] mr.engine.trainer INFO: Evaluation results for mridata_knee_2019_val in csv format:

[01/08 07:40:06] mr.evaluation.testing INFO: copypaste: val_nrmse,val_nrmse_mag,val_psnr,val_psnr_mag,val_ssim (Wang),val_nrmse_mag_scan,val_nrmse_scan,val_psnr_mag_scan,val_psnr_scan,val_ssim (Wang)_scan

[01/08 07:40:06] mr.evaluation.testing INFO: copypaste: 0.2112,0.1404,31.5090,35.0178,0.8314,0.1310,0.1952,42.9119,39.4501,0.9571

[01/08 07:40:06] mr.evaluation.testing INFO: Metrics (comma delimited):

val_nrmse,val_nrmse_mag,val_psnr,val_psnr_mag,val_ssim (Wang),val_nrmse_mag_scan,val_nrmse_scan,val_psnr_mag_scan,val_psnr_scan,val_ssim (Wang)_scan

0.2112,0.1404,31.5090,35.0178,0.8314,0.1310,0.1952,42.9119,39.4501,0.9571

[01/08 07:40:06] mr.utils.events INFO: eta: 0:13:01 iter: 199 loss: 18439.461 total_loss: 18439.461 time: 0.2363 data_time: 0.0001 lr: 0.000020 max_mem: 4234M

[01/08 07:40:12] mr.utils.events INFO: eta: 0:12:57 iter: 219 loss: 17119.530 total_loss: 17119.530 time: 0.2367 data_time: 0.0001 lr: 0.000022 max_mem: 4234M

[01/08 07:40:17] mr.utils.events INFO: eta: 0:12:53 iter: 239 loss: 16810.184 total_loss: 16810.184 time: 0.2394 data_time: 0.0279 lr: 0.000024 max_mem: 4234M

[01/08 07:40:22] mr.utils.events INFO: eta: 0:12:49 iter: 259 loss: 15697.525 total_loss: 15697.525 time: 0.2395 data_time: 0.0001 lr: 0.000026 max_mem: 4234M

[01/08 07:40:28] mr.utils.events INFO: eta: 0:12:45 iter: 279 loss: 16743.501 total_loss: 16743.501 time: 0.2393 data_time: 0.0001 lr: 0.000028 max_mem: 4234M

[01/08 07:40:33] mr.utils.events INFO: eta: 0:12:40 iter: 299 loss: 18045.708 total_loss: 18045.708 time: 0.2392 data_time: 0.0013 lr: 0.000030 max_mem: 4234M

[01/08 07:40:39] mr.utils.events INFO: eta: 0:12:36 iter: 319 loss: 16170.239 total_loss: 16170.239 time: 0.2392 data_time: 0.0001 lr: 0.000032 max_mem: 4234M

[01/08 07:40:45] mr.utils.events INFO: eta: 0:12:32 iter: 339 loss: 16581.456 total_loss: 16581.456 time: 0.2412 data_time: 0.0363 lr: 0.000034 max_mem: 4234M

[01/08 07:40:50] mr.utils.events INFO: eta: 0:12:28 iter: 359 loss: 17071.639 total_loss: 17071.639 time: 0.2411 data_time: 0.0001 lr: 0.000036 max_mem: 4234M

[01/08 07:40:56] mr.utils.events INFO: eta: 0:12:25 iter: 379 loss: 16226.621 total_loss: 16226.621 time: 0.2411 data_time: 0.0001 lr: 0.000038 max_mem: 4234M

[01/08 07:41:01] fvcore.common.checkpoint INFO: Saving checkpoint to /bmrNAS/people/arjun/results/meddlr/tests/basic/model_0000399.pth

[01/08 07:41:02] mr.data.datasets.register_mrco INFO: Loading /bmrNAS/people/arjun/code/meddlr/annotations/mridata_knee_2019/val.json takes 0.00 seconds

[01/08 07:41:02] mr.data.build INFO: Dropped 0 scans. 2 scans remaining

[01/08 07:41:02] mr.data.build INFO: Dropped references for 0/2 scans. 2 scans with reference remaining

[01/08 07:41:02] mr.evaluation.evaluator INFO: Start inference on 320 batches

[01/08 07:41:06] mr.evaluation.evaluator INFO: Inference done 11/320. 0.0223 s / img. ETA=0:00:47

[01/08 07:41:11] mr.evaluation.evaluator INFO: Inference done 44/320. 0.0222 s / img. ETA=0:00:42

[01/08 07:41:16] mr.evaluation.evaluator INFO: Inference done 77/320. 0.0221 s / img. ETA=0:00:37

[01/08 07:41:21] mr.evaluation.evaluator INFO: Inference done 110/320. 0.0221 s / img. ETA=0:00:32

[01/08 07:41:27] mr.evaluation.evaluator INFO: Inference done 143/320. 0.0221 s / img. ETA=0:00:27

[01/08 07:41:32] mr.evaluation.evaluator INFO: Inference done 176/320. 0.0221 s / img. ETA=0:00:22

[01/08 07:41:37] mr.evaluation.evaluator INFO: Inference done 209/320. 0.0221 s / img. ETA=0:00:17

[01/08 07:41:42] mr.evaluation.evaluator INFO: Inference done 242/320. 0.0221 s / img. ETA=0:00:12

[01/08 07:41:47] mr.evaluation.evaluator INFO: Inference done 275/320. 0.0221 s / img. ETA=0:00:06

[01/08 07:41:52] mr.evaluation.evaluator INFO: Inference done 308/320. 0.0221 s / img. ETA=0:00:01

[01/08 07:41:54] mr.evaluation.evaluator INFO: Total inference time: 0:00:49.053359 (0.155725 s / batch on 1 devices)

[01/08 07:41:54] mr.evaluation.evaluator INFO: Total inference pure compute time: 0:00:06 (0.021976 s / batch on 1 devices)

[01/08 07:42:04] mr.evaluation.scan_evaluator INFO: Structuring slices into volumes...

[01/08 07:42:07] mr.evaluation.recon_evaluation INFO: [ReconEvaluator] Slice metrics summary:

channel_0

--------------- --------------

val_nrmse 0.176 (0.045)

val_nrmse_mag 0.122 (0.030)

val_psnr 33.094 (3.019)

val_psnr_mag 36.272 (3.018)

val_ssim (Wang) 0.860 (0.080)

[01/08 07:42:07] mr.evaluation.recon_evaluation INFO: [ReconEvaluator] Scan metrics summary:

channel_0

-------------------- --------------

val_nrmse_mag_scan 0.113 (0.005)

val_nrmse_scan 0.163 (0.006)

val_psnr_mag_scan 44.208 (0.394)

val_psnr_scan 41.032 (0.507)

val_ssim (Wang)_scan 0.963 (0.002)

[01/08 07:42:07] mr.evaluation.evaluator INFO: Evaluation Time: 13.187915 s

[01/08 07:42:07] mr.engine.trainer INFO: Evaluation results for mridata_knee_2019_val in csv format: