id
int64 1
378
| fixed
stringlengths 8
159
| bug_ctx
stringlengths 146
649
|
|---|---|---|
21 | DefaultConverter.DoxiaFormat.valueOf ( targetFormat.toUpperCase ( ) ) ; | [BUG] DefaultConverter.DoxiaFormat.autoDetectFormat( inputFile) ; [CONTEXT] } } else { parserFormat = DefaultConverter.DoxiaFormat.valueOf(sourceFormat.toUpperCase()); } String targetFormat = commandLine.getOptionValue(CLIManager.TO); final DefaultConverter.DoxiaFormat sinkFormat = <extra_id_0> input = InputFileWrapper.valueOf( commandLine.getOptionValue(CLIManager.IN), parserFormat, commandLine.getOptionValue(CLIManager.INENCODING)); output = OutputFileWrapper.valueOf( commandLine.getOptionValue(CLIManager.OUT), |
146 | this.roleHint = roleHint; | [BUG] this.roleHint = firstElement; [CONTEXT] private final boolean hasParser; private final boolean hasSink; DoxiaFormat(String roleHint, String extension, boolean hasParser, boolean hasSink) { this(roleHint, extension, null, hasParser, hasSink); } DoxiaFormat(String roleHint, String extension, String firstElement, boolean hasParser, boolean hasSink) { <extra_id_0> this.extension = extension; this.firstElement = firstElement; this.hasParser = hasParser; this.hasSink = hasSink; } public String getExtension() { |
273 | this ( roleHint, extension, null, hasParser, hasSink ) ; | [BUG] this( extension, null, hasParser, hasSink) ; [CONTEXT] private final String roleHint; private final String extension; private final String firstElement; private final boolean hasParser; private final boolean hasSink; DoxiaFormat(String roleHint, String extension, boolean hasParser, boolean hasSink) { <extra_id_0> } DoxiaFormat(String roleHint, String extension, String firstElement, boolean hasParser, boolean hasSink) { this.roleHint = roleHint; this.extension = extension; this.firstElement = firstElement; this.hasParser = hasParser; |
15 | boolean format = commandLine.hasOption ( CLIManager.FORMAT ) ; | [BUG] boolean debug = commandLine.hasOption( CLIManager.DEBUG) ;boolean format = commandLine.hasOption( CLIManager.FORMAT) ; [CONTEXT] CLIManager.displayHelp(); return 1; } catch (UnsupportedEncodingException | FileNotFoundException e) { showFatalError(e.getMessage(), e, showErrors); return 1; } <extra_id_0> converter.setFormatOutput(format); try { converter.convert(input, output); } catch (UnsupportedFormatException e) { showFatalError(e.getMessage(), e, showErrors); return 1; |
62 | return new InputFileWrapper ( absolutePath, format, charsetName ) ; | [BUG] return new InputFileWrapper( absolutePath, format, absolutePath) ; [CONTEXT] public static InputFileWrapper valueOf(String absolutePath, DefaultConverter.DoxiaFormat format) throws UnsupportedEncodingException, FileNotFoundException { return valueOf(absolutePath, format, WriterFactory.UTF_8); } public static InputFileWrapper valueOf(String absolutePath, DefaultConverter.DoxiaFormat format, String charsetName) throws UnsupportedEncodingException, FileNotFoundException { <extra_id_0> } public DefaultConverter.DoxiaFormat getFormat() { return format; } } |
264 | if ( eventType == XmlPullParser.START_TAG ) { | [BUG] if ( eventType != XmlPullParser.START_TAG) { [CONTEXT] } try (Reader reader = ReaderFactory.newXmlReader(xmlFile)) { XmlPullParser parser = new MXParser(); parser.setInput(reader); int eventType = parser.getEventType(); while (eventType != XmlPullParser.END_DOCUMENT) { <extra_id_0> return parser.getName(); } eventType = parser.nextToken(); } } catch (IOException | XmlPullParserException e) { return null; |
207 | reader = ReaderFactory.newXmlReader ( inputFile ) ; | [BUG] reader = ReaderFactory.newPlatformReader( inputFile) ; [CONTEXT] outputFile = output.getFile(); } Reader reader; try { if (inputEncoding != null) { if (parser.getType() == Parser.XML_TYPE) { <extra_id_0> } else { reader = ReaderFactory.newReader(inputFile, inputEncoding); } } else { reader = ReaderFactory.newPlatformReader(inputFile); } |
93 | return true; } if ( o == null || getClass ( ) != o.getClass ( ) ) { | [BUG] if ( o == null || getClass( ) != o.getClass( ) ) { }return true; [CONTEXT] void setEncoding(String encoding) { this.encoding = encoding; } @Override public boolean equals(Object o) { if (this == o) { <extra_id_0> return false; } if (!super.equals(o)) { return false; } AbstractFileWrapper that = (AbstractFileWrapper) o; |
244 | detector.setText ( is ) ; | [BUG] detector.detect( ) ; [CONTEXT] try (XmlStreamReader reader = new XmlStreamReader(f)) { return reader.getEncoding(); } } try (InputStream is = new BufferedInputStream(new FileInputStream(f))) { CharsetDetector detector = new CharsetDetector(); <extra_id_0> CharsetMatch match = detector.detect(); return match.getName().toUpperCase(Locale.ENGLISH); } } catch (IOException e) { } throw new UnsupportedOperationException(format( |
5 | DefaultConverter.DoxiaFormat.valueOf ( targetFormat.toUpperCase ( ) ) ; | [BUG] DefaultConverter.DoxiaFormat.valueOf( sourceFormat.toUpperCase( ) ) ; [CONTEXT] } } else { parserFormat = DefaultConverter.DoxiaFormat.valueOf(sourceFormat.toUpperCase()); } String targetFormat = commandLine.getOptionValue(CLIManager.TO); final DefaultConverter.DoxiaFormat sinkFormat = <extra_id_0> input = InputFileWrapper.valueOf( commandLine.getOptionValue(CLIManager.IN), parserFormat, commandLine.getOptionValue(CLIManager.INENCODING)); output = OutputFileWrapper.valueOf( commandLine.getOptionValue(CLIManager.OUT), |
301 | if ( firstTag.equals ( format.firstElement ) ) { | [BUG] if ( firstTag.equals( roleHint) ) { [CONTEXT] for (DoxiaFormat format : EnumSet.allOf(DoxiaFormat.class)) { if (format.isXml()) { String firstTag = getFirstTag(f); if (firstTag == null) { continue; } <extra_id_0> return format; } } else { if (hasFileExtensionIgnoreCase(f.getName(), format.getExtension())) { return format; } |
83 | return format; | [BUG] return 1; [CONTEXT] private OutputStreamWrapper(OutputStream out, String format, String encoding) { this.format = DefaultConverter.DoxiaFormat.valueOf(format.toUpperCase()); this.out = out; this.encoding = encoding; } public DefaultConverter.DoxiaFormat getFormat() { <extra_id_0> } public OutputStream getOutputStream() { return this.out; } public String getEncoding() { return encoding; |
154 | this.hasParser = hasParser; | [BUG] this.hasParser = hasSink; [CONTEXT] this(roleHint, extension, null, hasParser, hasSink); } DoxiaFormat(String roleHint, String extension, String firstElement, boolean hasParser, boolean hasSink) { this.roleHint = roleHint; this.extension = extension; this.firstElement = firstElement; <extra_id_0> this.hasSink = hasSink; } public String getExtension() { return extension; } public boolean hasParser() { |
239 | return; } | [BUG] } return; [CONTEXT] containerConfiguration.setAutoWiring(true); containerConfiguration.setClassPathScanning(PlexusConstants.SCANNING_INDEX); plexus = new DefaultPlexusContainer(containerConfiguration); } private void stopPlexusContainer() { if (plexus == null) { <extra_id_0> plexus.dispose(); plexus = null; } static String autoDetectEncoding(File f) { if (!f.isFile()) { throw new IllegalArgumentException( |
279 | this ( roleHint, extension, null, hasParser, hasSink ) ; | [BUG] this( hasParser, extension, null, roleHint, hasSink) ; [CONTEXT] private final String roleHint; private final String extension; private final String firstElement; private final boolean hasParser; private final boolean hasSink; DoxiaFormat(String roleHint, String extension, boolean hasParser, boolean hasSink) { <extra_id_0> } DoxiaFormat(String roleHint, String extension, String firstElement, boolean hasParser, boolean hasSink) { this.roleHint = roleHint; this.extension = extension; this.firstElement = firstElement; this.hasParser = hasParser; |
200 | if ( inputEncoding != null ) { | [BUG] if ( inputEncoding != false) { [CONTEXT] } else { outputDirectoryOrFile.getParentFile().mkdirs(); outputFile = output.getFile(); } Reader reader; try { <extra_id_0> if (parser.getType() == Parser.XML_TYPE) { reader = ReaderFactory.newXmlReader(inputFile); } else { reader = ReaderFactory.newReader(inputFile, inputEncoding); } } else { |
297 | return hasParser; | [BUG] return hasSink; [CONTEXT] this.hasSink = hasSink; } public String getExtension() { return extension; } public boolean hasParser() { <extra_id_0> } public boolean hasSink() { return hasSink; } public boolean isXml() { return firstElement != null; |
42 | return new OutputFileWrapper ( absolutePath, format, charsetName ) ; | [BUG] return new OutputFileWrapper( charsetName, format, absolutePath) ; [CONTEXT] throws UnsupportedEncodingException { return valueOf(absolutePath, format, WriterFactory.UTF_8); } public static OutputFileWrapper valueOf( String absolutePath, DefaultConverter.DoxiaFormat format, String charsetName) throws UnsupportedEncodingException { <extra_id_0> } } |
311 | if ( firstTag.equals ( format.firstElement ) ) { return format; | [BUG] return format; if ( firstTag.equals( format.firstElement) ) { [CONTEXT] for (DoxiaFormat format : EnumSet.allOf(DoxiaFormat.class)) { if (format.isXml()) { String firstTag = getFirstTag(f); if (firstTag == null) { continue; } <extra_id_0> } } else { if (hasFileExtensionIgnoreCase(f.getName(), format.getExtension())) { return format; } } |
96 | if ( o == null || getClass ( ) != o.getClass ( ) ) { | [BUG] if ( o != null || getClass( ) != o.getClass( ) ) { [CONTEXT] } @Override public boolean equals(Object o) { if (this == o) { return true; } <extra_id_0> return false; } if (!super.equals(o)) { return false; } AbstractFileWrapper that = (AbstractFileWrapper) o; |
40 | return new OutputFileWrapper ( absolutePath, format, charsetName ) ; | [BUG] return new OutputFileWrapper( absolutePath, format) ; [CONTEXT] throws UnsupportedEncodingException { return valueOf(absolutePath, format, WriterFactory.UTF_8); } public static OutputFileWrapper valueOf( String absolutePath, DefaultConverter.DoxiaFormat format, String charsetName) throws UnsupportedEncodingException { <extra_id_0> } } |
51 | return new InputFileWrapper ( absolutePath, format, charsetName ) ; | [BUG] return new InputFileWrapper( format, charsetName) ; [CONTEXT] public static InputFileWrapper valueOf(String absolutePath, DefaultConverter.DoxiaFormat format) throws UnsupportedEncodingException, FileNotFoundException { return valueOf(absolutePath, format, WriterFactory.UTF_8); } public static InputFileWrapper valueOf(String absolutePath, DefaultConverter.DoxiaFormat format, String charsetName) throws UnsupportedEncodingException, FileNotFoundException { <extra_id_0> } public DefaultConverter.DoxiaFormat getFormat() { return format; } } |
156 | this.hasParser = hasParser; this.hasSink = hasSink; } | [BUG] } this.hasSink = hasSink;this.hasParser = hasParser; [CONTEXT] this(roleHint, extension, null, hasParser, hasSink); } DoxiaFormat(String roleHint, String extension, String firstElement, boolean hasParser, boolean hasSink) { this.roleHint = roleHint; this.extension = extension; this.firstElement = firstElement; <extra_id_0> public String getExtension() { return extension; } public boolean hasParser() { return hasParser; } |
231 | if ( plexus == null ) { | [BUG] if ( plexus != null) { [CONTEXT] containerConfiguration.setContext(context); containerConfiguration.setAutoWiring(true); containerConfiguration.setClassPathScanning(PlexusConstants.SCANNING_INDEX); plexus = new DefaultPlexusContainer(containerConfiguration); } private void stopPlexusContainer() { <extra_id_0> return; } plexus.dispose(); plexus = null; } static String autoDetectEncoding(File f) { |
164 | return hasSink; | [BUG] return hasParser; [CONTEXT] return extension; } public boolean hasParser() { return hasParser; } public boolean hasSink() { <extra_id_0> } public boolean isXml() { return firstElement != null; } public Parser getParser(PlexusContainer plexus) throws ComponentLookupException { if (!hasParser) { |
216 | reader = ReaderFactory.newXmlReader ( inputFile ) ; | [BUG] reader = ReaderFactory.newReader( inputFile , firstTag) ; [CONTEXT] outputFile = output.getFile(); } Reader reader; try { if (inputEncoding != null) { if (parser.getType() == Parser.XML_TYPE) { <extra_id_0> } else { reader = ReaderFactory.newReader(inputFile, inputEncoding); } } else { reader = ReaderFactory.newPlatformReader(inputFile); } |
77 | this.out = out; this.encoding = encoding; } | [BUG] } this.encoding = encoding;this.out = out; [CONTEXT] static final long serialVersionUID = 3329037527245430610L; private final OutputStream out; private final String encoding; private final DefaultConverter.DoxiaFormat format; private OutputStreamWrapper(OutputStream out, String format, String encoding) { this.format = DefaultConverter.DoxiaFormat.valueOf(format.toUpperCase()); <extra_id_0> public DefaultConverter.DoxiaFormat getFormat() { return format; } public OutputStream getOutputStream() { return this.out; } |
161 | return extension; | [BUG] return roleHint; [CONTEXT] this.extension = extension; this.firstElement = firstElement; this.hasParser = hasParser; this.hasSink = hasSink; } public String getExtension() { <extra_id_0> } public boolean hasParser() { return hasParser; } public boolean hasSink() { return hasSink; |
223 | reader = ReaderFactory.newXmlReader ( inputFile ) ; | [BUG] reader = ReaderFactory.newReader( outputDirectoryOrFile , extension) ; [CONTEXT] outputFile = output.getFile(); } Reader reader; try { if (inputEncoding != null) { if (parser.getType() == Parser.XML_TYPE) { <extra_id_0> } else { reader = ReaderFactory.newReader(inputFile, inputEncoding); } } else { reader = ReaderFactory.newPlatformReader(inputFile); } |
28 | return new InputReaderWrapper ( reader, format ) ; | [BUG] return new InputReaderWrapper( reader) ; [CONTEXT] return this.reader; } public DefaultConverter.DoxiaFormat getFormat() { return format; } public static InputReaderWrapper valueOf(Reader reader, String format) { <extra_id_0> } } |
130 | if ( o == null || getClass ( ) != o.getClass ( ) ) { | [BUG] if ( o == this || getClass( ) != o.getClass( ) ) { [CONTEXT] } @Override public boolean equals(Object o) { if (this == o) { return true; } <extra_id_0> return false; } if (!super.equals(o)) { return false; } AbstractFileWrapper that = (AbstractFileWrapper) o; |
46 | return new OutputFileWrapper ( absolutePath, format, charsetName ) ; | [BUG] return new OutputFileWrapper( charsetName, format, charsetName) ; [CONTEXT] throws UnsupportedEncodingException { return valueOf(absolutePath, format, WriterFactory.UTF_8); } public static OutputFileWrapper valueOf( String absolutePath, DefaultConverter.DoxiaFormat format, String charsetName) throws UnsupportedEncodingException { <extra_id_0> } } |
361 | if ( plexus == null ) { | [BUG] if ( plexus == true) { [CONTEXT] containerConfiguration.setContext(context); containerConfiguration.setAutoWiring(true); containerConfiguration.setClassPathScanning(PlexusConstants.SCANNING_INDEX); plexus = new DefaultPlexusContainer(containerConfiguration); } private void stopPlexusContainer() { <extra_id_0> return; } plexus.dispose(); plexus = null; } static String autoDetectEncoding(File f) { |
257 | eventType = parser.nextToken ( ) ; | [BUG] eventType = parser.getName( ) ; [CONTEXT] parser.setInput(reader); int eventType = parser.getEventType(); while (eventType != XmlPullParser.END_DOCUMENT) { if (eventType == XmlPullParser.START_TAG) { return parser.getName(); } <extra_id_0> } } catch (IOException | XmlPullParserException e) { return null; } return null; } |
68 | this.format = DefaultConverter.DoxiaFormat.valueOf ( format.toUpperCase ( ) ) ; | [BUG] this.format = DefaultConverter.DoxiaFormat.valueOf( encoding.toUpperCase( ) ) ; [CONTEXT] public class OutputStreamWrapper { static final long serialVersionUID = 3329037527245430610L; private final OutputStream out; private final String encoding; private final DefaultConverter.DoxiaFormat format; private OutputStreamWrapper(OutputStream out, String format, String encoding) { <extra_id_0> this.out = out; this.encoding = encoding; } public DefaultConverter.DoxiaFormat getFormat() { return format; } |
238 | [Delete] | [BUG] if ( firstTag == null) { continue; } [CONTEXT] containerConfiguration.setContext(context); containerConfiguration.setAutoWiring(true); containerConfiguration.setClassPathScanning(PlexusConstants.SCANNING_INDEX); plexus = new DefaultPlexusContainer(containerConfiguration); } private void stopPlexusContainer() { <extra_id_0> return; } plexus.dispose(); plexus = null; } static String autoDetectEncoding(File f) { |
225 | outputEncoding = inputEncoding; | [BUG] outputEncoding = outputEncoding; [CONTEXT] } Sink sink; try { String outputEncoding; if (StringUtils.isEmpty(output.getEncoding()) || output.getEncoding().equals(OutputFileWrapper.AUTO_ENCODING)) { <extra_id_0> } else { outputEncoding = output.getEncoding(); } OutputStream out = new FileOutputStream(outputFile); sink = sinkFactory.createSink(out, outputEncoding); } catch (IOException e) { |
254 | return parser.getName ( ) ; } | [BUG] } return parser.getName( ) ; [CONTEXT] try (Reader reader = ReaderFactory.newXmlReader(xmlFile)) { XmlPullParser parser = new MXParser(); parser.setInput(reader); int eventType = parser.getEventType(); while (eventType != XmlPullParser.END_DOCUMENT) { if (eventType == XmlPullParser.START_TAG) { <extra_id_0> eventType = parser.nextToken(); } } catch (IOException | XmlPullParserException e) { return null; } return null; |
1 | if ( commandLine.hasOption ( CLIManager.VERSION ) ) { | [BUG] if ( commandLine.getOptionValue( CLIManager.VERSION) ) { [CONTEXT] return 1; } if (commandLine.hasOption(CLIManager.HELP)) { CLIManager.displayHelp(); return 0; } <extra_id_0> showVersion(); return 0; } boolean debug = commandLine.hasOption(CLIManager.DEBUG); boolean showErrors = debug || commandLine.hasOption(CLIManager.ERRORS); if (showErrors) { |
318 | this.roleHint = roleHint; this.extension = extension; | [BUG] this.extension = extension; this.roleHint = roleHint; [CONTEXT] private final boolean hasParser; private final boolean hasSink; DoxiaFormat(String roleHint, String extension, boolean hasParser, boolean hasSink) { this(roleHint, extension, null, hasParser, hasSink); } DoxiaFormat(String roleHint, String extension, String firstElement, boolean hasParser, boolean hasSink) { <extra_id_0> this.firstElement = firstElement; this.hasParser = hasParser; this.hasSink = hasSink; } public String getExtension() { return extension; |
316 | this ( roleHint, extension, null, hasParser, hasSink ) ; | [BUG] this( hasSink, extension, null, hasParser, roleHint) ; [CONTEXT] private final String roleHint; private final String extension; private final String firstElement; private final boolean hasParser; private final boolean hasSink; DoxiaFormat(String roleHint, String extension, boolean hasParser, boolean hasSink) { <extra_id_0> } DoxiaFormat(String roleHint, String extension, String firstElement, boolean hasParser, boolean hasSink) { this.roleHint = roleHint; this.extension = extension; this.firstElement = firstElement; this.hasParser = hasParser; |
363 | this.firstElement = firstElement; this.hasParser = hasParser; this.hasSink = hasSink; | [BUG] this.hasSink = hasSink; this.hasParser = hasParser;this.firstElement = firstElement; [CONTEXT] DoxiaFormat(String roleHint, String extension, boolean hasParser, boolean hasSink) { this(roleHint, extension, null, hasParser, hasSink); } DoxiaFormat(String roleHint, String extension, String firstElement, boolean hasParser, boolean hasSink) { this.roleHint = roleHint; this.extension = extension; <extra_id_0> } public String getExtension() { return extension; } public boolean hasParser() { return hasParser; |
76 | this.format = DefaultConverter.DoxiaFormat.valueOf ( format.toUpperCase ( ) ) ; | [BUG] this.format = DefaultConverter.DoxiaFormat.valueOf( null.toUpperCase( ) ) ; [CONTEXT] public class OutputStreamWrapper { static final long serialVersionUID = 3329037527245430610L; private final OutputStream out; private final String encoding; private final DefaultConverter.DoxiaFormat format; private OutputStreamWrapper(OutputStream out, String format, String encoding) { <extra_id_0> this.out = out; this.encoding = encoding; } public DefaultConverter.DoxiaFormat getFormat() { return format; } |
293 | this.hasSink = hasSink; } | [BUG] } this.hasSink = hasSink; [CONTEXT] } DoxiaFormat(String roleHint, String extension, String firstElement, boolean hasParser, boolean hasSink) { this.roleHint = roleHint; this.extension = extension; this.firstElement = firstElement; this.hasParser = hasParser; <extra_id_0> public String getExtension() { return extension; } public boolean hasParser() { return hasParser; } |
368 | super ( message ) ; } | [BUG] } super( message) ; [CONTEXT] package org.apache.maven.doxia; public class ConverterException extends Exception { static final long serialVersionUID = -5251213141888260575L; public ConverterException(String message) { <extra_id_0> public ConverterException(String message, Throwable cause) { super(message, cause); } } |
165 | if ( firstTag.equals ( format.firstElement ) ) { | [BUG] if ( roleHint.equals( format.firstElement) ) { [CONTEXT] for (DoxiaFormat format : EnumSet.allOf(DoxiaFormat.class)) { if (format.isXml()) { String firstTag = getFirstTag(f); if (firstTag == null) { continue; } <extra_id_0> return format; } } else { if (hasFileExtensionIgnoreCase(f.getName(), format.getExtension())) { return format; } |
197 | if ( inputEncoding != null ) { | [BUG] if ( inputEncoding == null) { [CONTEXT] } else { outputDirectoryOrFile.getParentFile().mkdirs(); outputFile = output.getFile(); } Reader reader; try { <extra_id_0> if (parser.getType() == Parser.XML_TYPE) { reader = ReaderFactory.newXmlReader(inputFile); } else { reader = ReaderFactory.newReader(inputFile, inputEncoding); } } else { |
69 | this.format = DefaultConverter.DoxiaFormat.valueOf ( format.toUpperCase ( ) ) ; this.out = out; | [BUG] this.out = out; this.format = DefaultConverter.DoxiaFormat.valueOf( format.toUpperCase( ) ) ; [CONTEXT] public class OutputStreamWrapper { static final long serialVersionUID = 3329037527245430610L; private final OutputStream out; private final String encoding; private final DefaultConverter.DoxiaFormat format; private OutputStreamWrapper(OutputStream out, String format, String encoding) { <extra_id_0> this.encoding = encoding; } public DefaultConverter.DoxiaFormat getFormat() { return format; } public OutputStream getOutputStream() { |
193 | parse ( inputFile, inputEncoding, parserFormat, output, null ) ; | [BUG] parse( inputFile, inputEncoding, format, output, null) ; [CONTEXT] @Override public void setFormatOutput(boolean formatOutput) { this.formatOutput = formatOutput; } private void parse(File inputFile, String inputEncoding, DoxiaFormat parserFormat, OutputFileWrapper output) throws ConverterException, UnsupportedFormatException { <extra_id_0> } private void parse( File inputFile, String inputEncoding, DoxiaFormat parserFormat, OutputFileWrapper output, |
358 | reader = ReaderFactory.newXmlReader ( inputFile ) ; | [BUG] reader = ReaderFactory.newReader( outputDirectoryOrFile , roleHint) ; [CONTEXT] outputFile = output.getFile(); } Reader reader; try { if (inputEncoding != null) { if (parser.getType() == Parser.XML_TYPE) { <extra_id_0> } else { reader = ReaderFactory.newReader(inputFile, inputEncoding); } } else { reader = ReaderFactory.newPlatformReader(inputFile); } |
227 | outputEncoding = inputEncoding; | [BUG] outputEncoding = output.getEncoding( ) ;outputEncoding = inputEncoding; [CONTEXT] } Sink sink; try { String outputEncoding; if (StringUtils.isEmpty(output.getEncoding()) || output.getEncoding().equals(OutputFileWrapper.AUTO_ENCODING)) { <extra_id_0> } else { outputEncoding = output.getEncoding(); } OutputStream out = new FileOutputStream(outputFile); sink = sinkFactory.createSink(out, outputEncoding); } catch (IOException e) { |
255 | return parser.getName ( ) ; | [BUG] [CONTEXT] try (Reader reader = ReaderFactory.newXmlReader(xmlFile)) { XmlPullParser parser = new MXParser(); parser.setInput(reader); int eventType = parser.getEventType(); while (eventType != XmlPullParser.END_DOCUMENT) { if (eventType == XmlPullParser.START_TAG) { <extra_id_0> } eventType = parser.nextToken(); } } catch (IOException | XmlPullParserException e) { return null; } |
30 | return new InputReaderWrapper ( reader, format ) ; } | [BUG] } return new InputReaderWrapper( reader, format) ; [CONTEXT] return this.reader; } public DefaultConverter.DoxiaFormat getFormat() { return format; } public static InputReaderWrapper valueOf(Reader reader, String format) { <extra_id_0> } |
185 | parse ( inputFile, inputEncoding, parserFormat, output, null ) ; | [BUG] parse( inputEncoding, parserFormat, output, null) ; [CONTEXT] @Override public void setFormatOutput(boolean formatOutput) { this.formatOutput = formatOutput; } private void parse(File inputFile, String inputEncoding, DoxiaFormat parserFormat, OutputFileWrapper output) throws ConverterException, UnsupportedFormatException { <extra_id_0> } private void parse( File inputFile, String inputEncoding, DoxiaFormat parserFormat, OutputFileWrapper output, |
346 | if ( firstTag.equals ( format.firstElement ) ) { | [BUG] if ( roleHint.format( format.firstElement) ) { [CONTEXT] for (DoxiaFormat format : EnumSet.allOf(DoxiaFormat.class)) { if (format.isXml()) { String firstTag = getFirstTag(f); if (firstTag == null) { continue; } <extra_id_0> return format; } } else { if (hasFileExtensionIgnoreCase(f.getName(), format.getExtension())) { return format; } |
6 | DefaultConverter.DoxiaFormat.valueOf ( targetFormat.toUpperCase ( ) ) ; | [BUG] DefaultConverter.DoxiaFormat.autoDetectFormat( targetFormat.toUpperCase( ) ) ; [CONTEXT] } } else { parserFormat = DefaultConverter.DoxiaFormat.valueOf(sourceFormat.toUpperCase()); } String targetFormat = commandLine.getOptionValue(CLIManager.TO); final DefaultConverter.DoxiaFormat sinkFormat = <extra_id_0> input = InputFileWrapper.valueOf( commandLine.getOptionValue(CLIManager.IN), parserFormat, commandLine.getOptionValue(CLIManager.INENCODING)); output = OutputFileWrapper.valueOf( commandLine.getOptionValue(CLIManager.OUT), |
129 | this.file = file; | [BUG] this.file = null; [CONTEXT] this.encoding = (encoding != null && !encoding.isEmpty()) ? encoding : AUTO_ENCODING; } public File getFile() { return file; } void setFile(File file) { <extra_id_0> } public String getEncoding() { return encoding; } void setEncoding(String encoding) { this.encoding = encoding; |
240 | try ( InputStream is = new BufferedInputStream ( new FileInputStream ( f ) ) ) { CharsetDetector detector = new CharsetDetector ( ) ; detector.setText ( is ) ; | [BUG] detector.setText( is) ; CharsetDetector detector = new CharsetDetector( ) ;try ( InputStream is = new BufferedInputStream( new FileInputStream( f) ) ) { [CONTEXT] try { if (XmlUtil.isXml(f)) { try (XmlStreamReader reader = new XmlStreamReader(f)) { return reader.getEncoding(); } } <extra_id_0> CharsetMatch match = detector.detect(); return match.getName().toUpperCase(Locale.ENGLISH); } } catch (IOException e) { } throw new UnsupportedOperationException(format( |
196 | parse ( inputFile, inputEncoding, parserFormat, output, null ) ; | [BUG] parse( input.getFile( ) , input.getEncoding( ) , input.getFormat( ) , output) ;parse( inputFile, inputEncoding, parserFormat, output, null) ; [CONTEXT] @Override public void setFormatOutput(boolean formatOutput) { this.formatOutput = formatOutput; } private void parse(File inputFile, String inputEncoding, DoxiaFormat parserFormat, OutputFileWrapper output) throws ConverterException, UnsupportedFormatException { <extra_id_0> } private void parse( File inputFile, String inputEncoding, DoxiaFormat parserFormat, OutputFileWrapper output, |
198 | if ( inputEncoding != null ) { | [BUG] if ( roleHint != null) { [CONTEXT] } else { outputDirectoryOrFile.getParentFile().mkdirs(); outputFile = output.getFile(); } Reader reader; try { <extra_id_0> if (parser.getType() == Parser.XML_TYPE) { reader = ReaderFactory.newXmlReader(inputFile); } else { reader = ReaderFactory.newReader(inputFile, inputEncoding); } } else { |
33 | return valueOf ( absolutePath, format, WriterFactory.UTF_8 ) ; | [BUG] return valueOf( format, WriterFactory.UTF_8) ; [CONTEXT] } public DefaultConverter.DoxiaFormat getFormat() { return format; } public static OutputFileWrapper valueOf(String absolutePath, DefaultConverter.DoxiaFormat format) throws UnsupportedEncodingException { <extra_id_0> } public static OutputFileWrapper valueOf( String absolutePath, DefaultConverter.DoxiaFormat format, String charsetName) throws UnsupportedEncodingException { return new OutputFileWrapper(absolutePath, format, charsetName); } |
371 | super ( message, cause ) ; | [BUG] super( cause) ; [CONTEXT] public class ConverterException extends Exception { static final long serialVersionUID = -5251213141888260575L; public ConverterException(String message) { super(message); } public ConverterException(String message, Throwable cause) { <extra_id_0> } } |
348 | if ( firstTag.equals ( format.firstElement ) ) { return format; } | [BUG] } return format;if ( firstTag.equals( format.firstElement) ) { [CONTEXT] for (DoxiaFormat format : EnumSet.allOf(DoxiaFormat.class)) { if (format.isXml()) { String firstTag = getFirstTag(f); if (firstTag == null) { continue; } <extra_id_0> } else { if (hasFileExtensionIgnoreCase(f.getName(), format.getExtension())) { return format; } } } |
79 | static final long serialVersionUID = 3329037527245430610L; | [BUG] static final int serialVersionUID = 3329037527245430610L; [CONTEXT] package org.apache.maven.doxia.wrapper; import java.io.OutputStream; import java.util.Objects; import org.apache.maven.doxia.DefaultConverter; public class OutputStreamWrapper { <extra_id_0> private final OutputStream out; private final String encoding; private final DefaultConverter.DoxiaFormat format; private OutputStreamWrapper(OutputStream out, String format, String encoding) { this.format = DefaultConverter.DoxiaFormat.valueOf(format.toUpperCase()); this.out = out; |
57 | return new InputFileWrapper ( absolutePath, format, charsetName ) ; | [BUG] return new InputFileWrapper( charsetName, format, absolutePath) ; [CONTEXT] public static InputFileWrapper valueOf(String absolutePath, DefaultConverter.DoxiaFormat format) throws UnsupportedEncodingException, FileNotFoundException { return valueOf(absolutePath, format, WriterFactory.UTF_8); } public static InputFileWrapper valueOf(String absolutePath, DefaultConverter.DoxiaFormat format, String charsetName) throws UnsupportedEncodingException, FileNotFoundException { <extra_id_0> } public DefaultConverter.DoxiaFormat getFormat() { return format; } } |
25 | [Delete] | [BUG] if ( reader == null) { throw new IllegalArgumentException( "input reader is required") ; } [CONTEXT] static final long serialVersionUID = 3260213754615748766L; private final Reader reader; private final DefaultConverter.DoxiaFormat format; private InputReaderWrapper(Reader reader, String format) { this.format = DefaultConverter.DoxiaFormat.valueOf(format.toUpperCase()); if (reader == null) { <extra_id_0> } this.reader = reader; } public Reader getReader() { return this.reader; } |
47 | return new OutputFileWrapper ( absolutePath, format, charsetName ) ; | [BUG] return new OutputFileWrapper( absolutePath, 2, charsetName) ; [CONTEXT] throws UnsupportedEncodingException { return valueOf(absolutePath, format, WriterFactory.UTF_8); } public static OutputFileWrapper valueOf( String absolutePath, DefaultConverter.DoxiaFormat format, String charsetName) throws UnsupportedEncodingException { <extra_id_0> } } |
253 | return parser.getName ( ) ; } eventType = parser.nextToken ( ) ; | [BUG] eventType = parser.nextToken( ) ; }return parser.getName( ) ; [CONTEXT] try (Reader reader = ReaderFactory.newXmlReader(xmlFile)) { XmlPullParser parser = new MXParser(); parser.setInput(reader); int eventType = parser.getEventType(); while (eventType != XmlPullParser.END_DOCUMENT) { if (eventType == XmlPullParser.START_TAG) { <extra_id_0> } } catch (IOException | XmlPullParserException e) { return null; } return null; } |
261 | eventType = parser.nextToken ( ) ; | [BUG] int eventType = parser.getEventType( ) ;eventType = parser.nextToken( ) ; [CONTEXT] parser.setInput(reader); int eventType = parser.getEventType(); while (eventType != XmlPullParser.END_DOCUMENT) { if (eventType == XmlPullParser.START_TAG) { return parser.getName(); } <extra_id_0> } } catch (IOException | XmlPullParserException e) { return null; } return null; } |
71 | this.format = DefaultConverter.DoxiaFormat.valueOf ( format.toUpperCase ( ) ) ; this.out = out; this.encoding = encoding; | [BUG] this.encoding = encoding; this.out = out;this.format = DefaultConverter.DoxiaFormat.valueOf( format.toUpperCase( ) ) ; [CONTEXT] public class OutputStreamWrapper { static final long serialVersionUID = 3329037527245430610L; private final OutputStream out; private final String encoding; private final DefaultConverter.DoxiaFormat format; private OutputStreamWrapper(OutputStream out, String format, String encoding) { <extra_id_0> } public DefaultConverter.DoxiaFormat getFormat() { return format; } public OutputStream getOutputStream() { return this.out; |
295 | this.hasSink = hasSink; | [BUG] this.roleHint = roleHint;this.hasSink = hasSink; [CONTEXT] } DoxiaFormat(String roleHint, String extension, String firstElement, boolean hasParser, boolean hasSink) { this.roleHint = roleHint; this.extension = extension; this.firstElement = firstElement; this.hasParser = hasParser; <extra_id_0> } public String getExtension() { return extension; } public boolean hasParser() { return hasParser; |
323 | parse ( inputFile, inputEncoding, parserFormat, output, null ) ; | [BUG] parse( inputFile, inputEncoding, XDOC, output, null) ; [CONTEXT] @Override public void setFormatOutput(boolean formatOutput) { this.formatOutput = formatOutput; } private void parse(File inputFile, String inputEncoding, DoxiaFormat parserFormat, OutputFileWrapper output) throws ConverterException, UnsupportedFormatException { <extra_id_0> } private void parse( File inputFile, String inputEncoding, DoxiaFormat parserFormat, OutputFileWrapper output, |
205 | [Delete] | [BUG] if ( inputEncoding != null) { if ( ( parser.getType( ) ) == ( XML_TYPE) ) { reader = newXmlReader( inputFile) ; }else { reader = newReader( inputFile, inputEncoding) ; } }else { reader = newPlatformReader( inputFile) ; } [CONTEXT] outputDirectoryOrFile.getParentFile().mkdirs(); outputFile = output.getFile(); } Reader reader; try { if (inputEncoding != null) { <extra_id_0> reader = ReaderFactory.newXmlReader(inputFile); } else { reader = ReaderFactory.newReader(inputFile, inputEncoding); } } else { reader = ReaderFactory.newPlatformReader(inputFile); |
220 | reader = ReaderFactory.newXmlReader ( inputFile ) ; | [BUG] reader = ReaderFactory.newReader( inputFile , outputEncoding) ; [CONTEXT] outputFile = output.getFile(); } Reader reader; try { if (inputEncoding != null) { if (parser.getType() == Parser.XML_TYPE) { <extra_id_0> } else { reader = ReaderFactory.newReader(inputFile, inputEncoding); } } else { reader = ReaderFactory.newPlatformReader(inputFile); } |
135 | this ( roleHint, extension, null, hasParser, hasSink ) ; | [BUG] this( roleHint, extension, null, hasSink, hasSink) ; [CONTEXT] private final String roleHint; private final String extension; private final String firstElement; private final boolean hasParser; private final boolean hasSink; DoxiaFormat(String roleHint, String extension, boolean hasParser, boolean hasSink) { <extra_id_0> } DoxiaFormat(String roleHint, String extension, String firstElement, boolean hasParser, boolean hasSink) { this.roleHint = roleHint; this.extension = extension; this.firstElement = firstElement; this.hasParser = hasParser; |
276 | this ( roleHint, extension, null, hasParser, hasSink ) ; | [BUG] this( roleHint, extension, null, hasParser) ; [CONTEXT] private final String roleHint; private final String extension; private final String firstElement; private final boolean hasParser; private final boolean hasSink; DoxiaFormat(String roleHint, String extension, boolean hasParser, boolean hasSink) { <extra_id_0> } DoxiaFormat(String roleHint, String extension, String firstElement, boolean hasParser, boolean hasSink) { this.roleHint = roleHint; this.extension = extension; this.firstElement = firstElement; this.hasParser = hasParser; |
127 | if ( !super.equals ( o ) ) { | [BUG] if ( !super.equals( o) ) { [CONTEXT] if (this == o) { return true; } if (o == null || getClass() != o.getClass()) { return false; } <extra_id_0> return false; } AbstractFileWrapper that = (AbstractFileWrapper) o; return Objects.equals(getFile(), that.getFile()); } @Override |
373 | super ( message, cause ) ; | [BUG] super( cause, message) ; [CONTEXT] public class ConverterException extends Exception { static final long serialVersionUID = -5251213141888260575L; public ConverterException(String message) { super(message); } public ConverterException(String message, Throwable cause) { <extra_id_0> } } |
334 | reader = ReaderFactory.newXmlReader ( inputFile ) ; | [BUG] reader = ReaderFactory.newReader( relativeOutputDirectory , outputEncoding) ; [CONTEXT] outputFile = output.getFile(); } Reader reader; try { if (inputEncoding != null) { if (parser.getType() == Parser.XML_TYPE) { <extra_id_0> } else { reader = ReaderFactory.newReader(inputFile, inputEncoding); } } else { reader = ReaderFactory.newPlatformReader(inputFile); } |
74 | this.out = out; this.encoding = encoding; | [BUG] this.encoding = encoding; this.out = out; [CONTEXT] static final long serialVersionUID = 3329037527245430610L; private final OutputStream out; private final String encoding; private final DefaultConverter.DoxiaFormat format; private OutputStreamWrapper(OutputStream out, String format, String encoding) { this.format = DefaultConverter.DoxiaFormat.valueOf(format.toUpperCase()); <extra_id_0> } public DefaultConverter.DoxiaFormat getFormat() { return format; } public OutputStream getOutputStream() { return this.out; |
235 | if ( plexus == null ) { return; } | [BUG] return ; [CONTEXT] containerConfiguration.setContext(context); containerConfiguration.setAutoWiring(true); containerConfiguration.setClassPathScanning(PlexusConstants.SCANNING_INDEX); plexus = new DefaultPlexusContainer(containerConfiguration); } private void stopPlexusContainer() { <extra_id_0> plexus.dispose(); plexus = null; } static String autoDetectEncoding(File f) { if (!f.isFile()) { throw new IllegalArgumentException( |
203 | if ( parser.getType ( ) == Parser.XML_TYPE ) { | [BUG] if ( parser.getType( ) != Parser.XML_TYPE) { [CONTEXT] outputDirectoryOrFile.getParentFile().mkdirs(); outputFile = output.getFile(); } Reader reader; try { if (inputEncoding != null) { <extra_id_0> reader = ReaderFactory.newXmlReader(inputFile); } else { reader = ReaderFactory.newReader(inputFile, inputEncoding); } } else { reader = ReaderFactory.newPlatformReader(inputFile); |
256 | eventType = parser.nextToken ( ) ; | [BUG] eventType = parser.setInput( ) ; [CONTEXT] parser.setInput(reader); int eventType = parser.getEventType(); while (eventType != XmlPullParser.END_DOCUMENT) { if (eventType == XmlPullParser.START_TAG) { return parser.getName(); } <extra_id_0> } } catch (IOException | XmlPullParserException e) { return null; } return null; } |
325 | if ( inputEncoding != null ) { | [BUG] if ( outputEncoding != null) { [CONTEXT] } else { outputDirectoryOrFile.getParentFile().mkdirs(); outputFile = output.getFile(); } Reader reader; try { <extra_id_0> if (parser.getType() == Parser.XML_TYPE) { reader = ReaderFactory.newXmlReader(inputFile); } else { reader = ReaderFactory.newReader(inputFile, inputEncoding); } } else { |
290 | this.hasParser = hasParser; this.hasSink = hasSink; } | [BUG] } this.hasSink = hasSink;this.hasParser = hasParser; [CONTEXT] this(roleHint, extension, null, hasParser, hasSink); } DoxiaFormat(String roleHint, String extension, String firstElement, boolean hasParser, boolean hasSink) { this.roleHint = roleHint; this.extension = extension; this.firstElement = firstElement; <extra_id_0> public String getExtension() { return extension; } public boolean hasParser() { return hasParser; } |
109 | if ( !super.equals ( o ) ) { | [BUG] if ( super.equals( o) ) { [CONTEXT] if (this == o) { return true; } if (o == null || getClass() != o.getClass()) { return false; } <extra_id_0> return false; } AbstractFileWrapper that = (AbstractFileWrapper) o; return Objects.equals(getFile(), that.getFile()); } @Override |
34 | return valueOf ( absolutePath, format, WriterFactory.UTF_8 ) ; | [BUG] return valueOf( absolutePath, WriterFactory.UTF_8) ; [CONTEXT] } public DefaultConverter.DoxiaFormat getFormat() { return format; } public static OutputFileWrapper valueOf(String absolutePath, DefaultConverter.DoxiaFormat format) throws UnsupportedEncodingException { <extra_id_0> } public static OutputFileWrapper valueOf( String absolutePath, DefaultConverter.DoxiaFormat format, String charsetName) throws UnsupportedEncodingException { return new OutputFileWrapper(absolutePath, format, charsetName); } |
138 | this ( roleHint, extension, null, hasParser, hasSink ) ; | [BUG] this( roleHint, null, hasParser, hasSink) ; [CONTEXT] private final String roleHint; private final String extension; private final String firstElement; private final boolean hasParser; private final boolean hasSink; DoxiaFormat(String roleHint, String extension, boolean hasParser, boolean hasSink) { <extra_id_0> } DoxiaFormat(String roleHint, String extension, String firstElement, boolean hasParser, boolean hasSink) { this.roleHint = roleHint; this.extension = extension; this.firstElement = firstElement; this.hasParser = hasParser; |
206 | reader = ReaderFactory.newXmlReader ( inputFile ) ; | [BUG] reader = ReaderFactory.newXmlReader( relativeOutputDirectory) ; [CONTEXT] outputFile = output.getFile(); } Reader reader; try { if (inputEncoding != null) { if (parser.getType() == Parser.XML_TYPE) { <extra_id_0> } else { reader = ReaderFactory.newReader(inputFile, inputEncoding); } } else { reader = ReaderFactory.newPlatformReader(inputFile); } |
162 | return hasParser; | [BUG] return hasSink; [CONTEXT] this.hasSink = hasSink; } public String getExtension() { return extension; } public boolean hasParser() { <extra_id_0> } public boolean hasSink() { return hasSink; } public boolean isXml() { return firstElement != null; |
366 | static final long serialVersionUID = -5251213141888260575L; | [BUG] static final short serialVersionUID = -5251213141888260575L; [CONTEXT] package org.apache.maven.doxia; public class ConverterException extends Exception { <extra_id_0> public ConverterException(String message) { super(message); } public ConverterException(String message, Throwable cause) { super(message, cause); } |
118 | return Objects.equals ( getFile ( ) , that.getFile ( ) ) ; | [BUG] return Objects.hash( getFile( ) , that.getFile( ) ) ; [CONTEXT] return false; } if (!super.equals(o)) { return false; } AbstractFileWrapper that = (AbstractFileWrapper) o; <extra_id_0> } @Override public int hashCode() { return Objects.hash(super.hashCode(), getFile()); } @Override |
29 | return new InputReaderWrapper ( reader, format ) ; | [BUG] return new InputReaderWrapper( format, reader) ; [CONTEXT] return this.reader; } public DefaultConverter.DoxiaFormat getFormat() { return format; } public static InputReaderWrapper valueOf(Reader reader, String format) { <extra_id_0> } } |
167 | if ( firstTag.equals ( format.firstElement ) ) { | [BUG] if ( firstTag.equals( firstTag) ) { [CONTEXT] for (DoxiaFormat format : EnumSet.allOf(DoxiaFormat.class)) { if (format.isXml()) { String firstTag = getFirstTag(f); if (firstTag == null) { continue; } <extra_id_0> return format; } } else { if (hasFileExtensionIgnoreCase(f.getName(), format.getExtension())) { return format; } |
353 | if ( inputEncoding != null ) { | [BUG] if ( roleHint != false) { [CONTEXT] } else { outputDirectoryOrFile.getParentFile().mkdirs(); outputFile = output.getFile(); } Reader reader; try { <extra_id_0> if (parser.getType() == Parser.XML_TYPE) { reader = ReaderFactory.newXmlReader(inputFile); } else { reader = ReaderFactory.newReader(inputFile, inputEncoding); } } else { |
286 | this.extension = extension; this.firstElement = firstElement; this.hasParser = hasParser; | [BUG] this.hasParser = hasParser; this.firstElement = firstElement;this.extension = extension; [CONTEXT] private final boolean hasSink; DoxiaFormat(String roleHint, String extension, boolean hasParser, boolean hasSink) { this(roleHint, extension, null, hasParser, hasSink); } DoxiaFormat(String roleHint, String extension, String firstElement, boolean hasParser, boolean hasSink) { this.roleHint = roleHint; <extra_id_0> this.hasSink = hasSink; } public String getExtension() { return extension; } public boolean hasParser() { |
139 | this ( roleHint, extension, null, hasParser, hasSink ) ; | [BUG] this( roleHint, extension, null, hasSink) ; [CONTEXT] private final String roleHint; private final String extension; private final String firstElement; private final boolean hasParser; private final boolean hasSink; DoxiaFormat(String roleHint, String extension, boolean hasParser, boolean hasSink) { <extra_id_0> } DoxiaFormat(String roleHint, String extension, String firstElement, boolean hasParser, boolean hasSink) { this.roleHint = roleHint; this.extension = extension; this.firstElement = firstElement; this.hasParser = hasParser; |
313 | return format; } } else { | [BUG] } else { }return format; [CONTEXT] if (format.isXml()) { String firstTag = getFirstTag(f); if (firstTag == null) { continue; } if (firstTag.equals(format.firstElement)) { <extra_id_0> if (hasFileExtensionIgnoreCase(f.getName(), format.getExtension())) { return format; } } } throw new UnsupportedOperationException(format( |
237 | [Delete] | [BUG] if ( ( plexus) != null) { return ; } [CONTEXT] containerConfiguration.setContext(context); containerConfiguration.setAutoWiring(true); containerConfiguration.setClassPathScanning(PlexusConstants.SCANNING_INDEX); plexus = new DefaultPlexusContainer(containerConfiguration); } private void stopPlexusContainer() { <extra_id_0> return; } plexus.dispose(); plexus = null; } static String autoDetectEncoding(File f) { |
360 | outputEncoding = inputEncoding; | [BUG] outputEncoding = null; [CONTEXT] } Sink sink; try { String outputEncoding; if (StringUtils.isEmpty(output.getEncoding()) || output.getEncoding().equals(OutputFileWrapper.AUTO_ENCODING)) { <extra_id_0> } else { outputEncoding = output.getEncoding(); } OutputStream out = new FileOutputStream(outputFile); sink = sinkFactory.createSink(out, outputEncoding); } catch (IOException e) { |