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bc5cdr

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The dataset viewer is not available for this dataset.
Cannot get the config names for the dataset.
Error code:   ConfigNamesError
Exception:    ImportError
Message:      To be able to use bigbio/bc5cdr, you need to install the following dependency: bioc.
Please install it using 'pip install bioc' for instance.
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/dataset/config_names.py", line 66, in compute_config_names_response
                  config_names = get_dataset_config_names(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/inspect.py", line 347, in get_dataset_config_names
                  dataset_module = dataset_module_factory(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1914, in dataset_module_factory
                  raise e1 from None
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1880, in dataset_module_factory
                  return HubDatasetModuleFactoryWithScript(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1504, in get_module
                  local_imports = _download_additional_modules(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 354, in _download_additional_modules
                  raise ImportError(
              ImportError: To be able to use bigbio/bc5cdr, you need to install the following dependency: bioc.
              Please install it using 'pip install bioc' for instance.

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Dataset Card for BC5CDR

The BioCreative V Chemical Disease Relation (CDR) dataset is a large annotated text corpus of human annotations of all chemicals, diseases and their interactions in 1,500 PubMed articles.

Citation Information 

@article{DBLP:journals/biodb/LiSJSWLDMWL16,
  author    = {Jiao Li and
               Yueping Sun and
               Robin J. Johnson and
               Daniela Sciaky and
               Chih{-}Hsuan Wei and
               Robert Leaman and
               Allan Peter Davis and
               Carolyn J. Mattingly and
               Thomas C. Wiegers and
               Zhiyong Lu},
  title     = {BioCreative {V} {CDR} task corpus: a resource for chemical disease
               relation extraction},
  journal   = {Database J. Biol. Databases Curation},
  volume    = {2016},
  year      = {2016},
  url       = {https://doi.org/10.1093/database/baw068},
  doi       = {10.1093/database/baw068},
  timestamp = {Thu, 13 Aug 2020 12:41:41 +0200},
  biburl    = {https://dblp.org/rec/journals/biodb/LiSJSWLDMWL16.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
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Homepage:
biocreative.org
Pubmed:
True
Public:
True
Tasks:
NER,NED,RE

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