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--- |
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language: |
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- en |
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bigbio_language: |
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- English |
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license: unknown |
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multilinguality: monolingual |
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bigbio_license_shortname: UNKNOWN |
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pretty_name: BioRelEx |
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homepage: https://github.com/YerevaNN/BioRelEx |
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bigbio_pubmed: True |
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bigbio_public: True |
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bigbio_tasks: |
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- NAMED_ENTITY_RECOGNITION |
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- NAMED_ENTITY_DISAMBIGUATION |
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- RELATION_EXTRACTION |
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- COREFERENCE_RESOLUTION |
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--- |
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# Dataset Card for BioRelEx |
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## Dataset Description |
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- **Homepage:** https://github.com/YerevaNN/BioRelEx |
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- **Pubmed:** True |
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- **Public:** True |
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- **Tasks:** NER,NED,RE,COREF |
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BioRelEx is a biological relation extraction dataset. Version 1.0 contains 2010 |
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annotated sentences that describe binding interactions between various |
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biological entities (proteins, chemicals, etc.). 1405 sentences are for |
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training, another 201 sentences are for validation. They are publicly available |
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at https://github.com/YerevaNN/BioRelEx/releases. Another 404 sentences are for |
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testing which are kept private for at this Codalab competition |
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https://competitions.codalab.org/competitions/20468. All sentences contain words |
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"bind", "bound" or "binding". For every sentence we provide: 1) Complete |
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annotations of all biological entities that appear in the sentence 2) Entity |
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types (32 types) and grounding information for most of the proteins and families |
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(links to uniprot, interpro and other databases) 3) Coreference between entities |
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in the same sentence (e.g. abbreviations and synonyms) 4) Binding interactions |
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between the annotated entities 5) Binding interaction types: positive, negative |
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(A does not bind B) and neutral (A may bind to B) |
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## Citation Information |
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``` |
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@inproceedings{khachatrian2019biorelex, |
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title = "{B}io{R}el{E}x 1.0: Biological Relation Extraction Benchmark", |
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author = "Khachatrian, Hrant and |
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Nersisyan, Lilit and |
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Hambardzumyan, Karen and |
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Galstyan, Tigran and |
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Hakobyan, Anna and |
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Arakelyan, Arsen and |
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Rzhetsky, Andrey and |
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Galstyan, Aram", |
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booktitle = "Proceedings of the 18th BioNLP Workshop and Shared Task", |
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month = aug, |
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year = "2019", |
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address = "Florence, Italy", |
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publisher = "Association for Computational Linguistics", |
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url = "https://aclanthology.org/W19-5019", |
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doi = "10.18653/v1/W19-5019", |
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pages = "176--190" |
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} |
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``` |
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