id
stringlengths 17
20
| document_id
stringlengths 5
8
| passages
list | entities
list | events
list | coreferences
list | relations
list |
|---|---|---|---|---|---|---|
1.0alpha7.train.200
|
3655981
|
[
{
"id": "1.0alpha7.train.200.sent",
"type": "sentence",
"text": [
"Furthermore, G6P binding to GS induces a conformational change, increasing its susceptibility to dephosphorylation ( 5, 6)."
],
"offsets": [
[
0,
123
]
]
}
] |
[
{
"id": "1.0alpha7.train.200.ent0_0",
"type": "protein-family",
"text": [
"G6P"
],
"offsets": [
[
13,
16
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR016275"
}
]
},
{
"id": "1.0alpha7.train.200.ent1_0",
"type": "protein-family",
"text": [
"GS"
],
"offsets": [
[
28,
30
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR003605"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.200.coref0",
"entity_ids": [
"1.0alpha7.train.200.ent0_0"
]
},
{
"id": "1.0alpha7.train.200.coref1",
"entity_ids": [
"1.0alpha7.train.200.ent1_0"
]
}
] |
[
{
"id": "1.0alpha7.train.200.rel0s1.0alpha7.train.200.ent0_0.o1.0alpha7.train.200.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.200.ent0_0",
"arg2_id": "1.0alpha7.train.200.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.201
|
9270266
|
[
{
"id": "1.0alpha7.train.201.sent",
"type": "sentence",
"text": [
"(A) The peptide analogous to the wild-type N terminus of KCNK9 (and KCNK3) binds beta-COP from rat brain, while peptides with the NQ mutation do not (left)."
],
"offsets": [
[
0,
156
]
]
}
] |
[
{
"id": "1.0alpha7.train.201.ent0_0",
"type": "protein",
"text": [
"beta-COP"
],
"offsets": [
[
81,
89
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1315"
},
{
"db_name": "hgnc",
"db_id": "COPB1"
},
{
"db_name": "uniprot",
"db_id": "P53618"
}
]
},
{
"id": "1.0alpha7.train.201.ent1_0",
"type": "protein",
"text": [
"KCNK9"
],
"offsets": [
[
57,
62
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "51305"
},
{
"db_name": "hgnc",
"db_id": "KCNK9"
},
{
"db_name": "uniprot",
"db_id": "Q9NPC2"
}
]
},
{
"id": "1.0alpha7.train.201.ent2_0",
"type": "protein",
"text": [
"KCNK3"
],
"offsets": [
[
68,
73
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3777"
},
{
"db_name": "hgnc",
"db_id": "KCNK3"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.201.coref0",
"entity_ids": [
"1.0alpha7.train.201.ent0_0"
]
},
{
"id": "1.0alpha7.train.201.coref1",
"entity_ids": [
"1.0alpha7.train.201.ent1_0"
]
},
{
"id": "1.0alpha7.train.201.coref2",
"entity_ids": [
"1.0alpha7.train.201.ent2_0"
]
}
] |
[
{
"id": "1.0alpha7.train.201.rel0s1.0alpha7.train.201.ent0_0.o1.0alpha7.train.201.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.201.ent0_0",
"arg2_id": "1.0alpha7.train.201.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.201.rel1s1.0alpha7.train.201.ent0_0.o1.0alpha7.train.201.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.201.ent0_0",
"arg2_id": "1.0alpha7.train.201.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.202
|
9539483
|
[
{
"id": "1.0alpha7.train.202.sent",
"type": "sentence",
"text": [
"On the other hand, the SH2 domain of Crk can potentially bind to both p130Cas and paxillin."
],
"offsets": [
[
0,
91
]
]
}
] |
[
{
"id": "1.0alpha7.train.202.ent0_0",
"type": "protein",
"text": [
"Crk"
],
"offsets": [
[
37,
40
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1398"
},
{
"db_name": "hgnc",
"db_id": "CRK"
},
{
"db_name": "uniprot",
"db_id": "P46108"
}
]
},
{
"id": "1.0alpha7.train.202.ent1_0",
"type": "protein",
"text": [
"p130Cas"
],
"offsets": [
[
70,
77
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "9564"
},
{
"db_name": "hgnc",
"db_id": "BCAR1"
},
{
"db_name": "uniprot",
"db_id": "P56945"
}
]
},
{
"id": "1.0alpha7.train.202.ent2_0",
"type": "protein-domain",
"text": [
"SH2 domain"
],
"offsets": [
[
23,
33
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR000980"
}
]
},
{
"id": "1.0alpha7.train.202.ent3_0",
"type": "protein",
"text": [
"paxillin"
],
"offsets": [
[
82,
90
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5829"
},
{
"db_name": "hgnc",
"db_id": "PXN"
},
{
"db_name": "uniprot",
"db_id": "P49023"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.202.coref0",
"entity_ids": [
"1.0alpha7.train.202.ent0_0"
]
},
{
"id": "1.0alpha7.train.202.coref1",
"entity_ids": [
"1.0alpha7.train.202.ent1_0"
]
},
{
"id": "1.0alpha7.train.202.coref2",
"entity_ids": [
"1.0alpha7.train.202.ent2_0"
]
},
{
"id": "1.0alpha7.train.202.coref3",
"entity_ids": [
"1.0alpha7.train.202.ent3_0"
]
}
] |
[
{
"id": "1.0alpha7.train.202.rel0s1.0alpha7.train.202.ent0_0.o1.0alpha7.train.202.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.202.ent0_0",
"arg2_id": "1.0alpha7.train.202.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.202.rel1s1.0alpha7.train.202.ent0_0.o1.0alpha7.train.202.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.202.ent0_0",
"arg2_id": "1.0alpha7.train.202.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.203
|
1814820
|
[
{
"id": "1.0alpha7.train.203.sent",
"type": "sentence",
"text": [
"TAFII250 binds directly to TBP and multiple other TAFIIs, thus serving as a potential scaffold for the multiprotein complex ( 28, 29)."
],
"offsets": [
[
0,
134
]
]
}
] |
[
{
"id": "1.0alpha7.train.203.ent0_0",
"type": "protein",
"text": [
"TAFII250"
],
"offsets": [
[
0,
8
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P51123"
}
]
},
{
"id": "1.0alpha7.train.203.ent1_0",
"type": "protein",
"text": [
"TBP"
],
"offsets": [
[
27,
30
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6908"
},
{
"db_name": "hgnc",
"db_id": "TBP"
},
{
"db_name": "uniprot",
"db_id": "P20226"
}
]
},
{
"id": "1.0alpha7.train.203.ent2_0",
"type": "protein-family",
"text": [
"TAFIIs"
],
"offsets": [
[
50,
56
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR004823"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.203.coref0",
"entity_ids": [
"1.0alpha7.train.203.ent0_0"
]
},
{
"id": "1.0alpha7.train.203.coref1",
"entity_ids": [
"1.0alpha7.train.203.ent1_0"
]
},
{
"id": "1.0alpha7.train.203.coref2",
"entity_ids": [
"1.0alpha7.train.203.ent2_0"
]
}
] |
[
{
"id": "1.0alpha7.train.203.rel0s1.0alpha7.train.203.ent0_0.o1.0alpha7.train.203.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.203.ent0_0",
"arg2_id": "1.0alpha7.train.203.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.203.rel1s1.0alpha7.train.203.ent0_0.o1.0alpha7.train.203.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.203.ent0_0",
"arg2_id": "1.0alpha7.train.203.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.204
|
10947020
|
[
{
"id": "1.0alpha7.train.204.sent",
"type": "sentence",
"text": [
"Since TSA induced Sp1 binding to Sp1 consensus sequences in Hep3B cells, we investigated whether TSA affected Sp1 phosphorylation, a possible cause for the increase of Sp1 binding to its consensus DNA sequences."
],
"offsets": [
[
0,
211
]
]
}
] |
[
{
"id": "1.0alpha7.train.204.ent0_0",
"type": "DNA",
"text": [
"DNA"
],
"offsets": [
[
197,
200
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "25782"
},
{
"db_name": "hgnc",
"db_id": "RAB3GAP2"
},
{
"db_name": "uniprot",
"db_id": "Q9H2M9"
}
]
},
{
"id": "1.0alpha7.train.204.ent1_0",
"type": "protein",
"text": [
"Sp1"
],
"offsets": [
[
18,
21
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6667"
},
{
"db_name": "hgnc",
"db_id": "SP1"
},
{
"db_name": "uniprot",
"db_id": "P08047"
}
]
},
{
"id": "1.0alpha7.train.204.ent2_1",
"type": "protein",
"text": [
"Sp1"
],
"offsets": [
[
33,
36
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6667"
},
{
"db_name": "hgnc",
"db_id": "SP1"
},
{
"db_name": "uniprot",
"db_id": "P08047"
}
]
},
{
"id": "1.0alpha7.train.204.ent3_2",
"type": "protein",
"text": [
"Sp1"
],
"offsets": [
[
110,
113
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6667"
},
{
"db_name": "hgnc",
"db_id": "SP1"
},
{
"db_name": "uniprot",
"db_id": "P08047"
}
]
},
{
"id": "1.0alpha7.train.204.ent4_3",
"type": "protein",
"text": [
"Sp1"
],
"offsets": [
[
168,
171
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6667"
},
{
"db_name": "hgnc",
"db_id": "SP1"
},
{
"db_name": "uniprot",
"db_id": "P08047"
}
]
},
{
"id": "1.0alpha7.train.204.ent5_0",
"type": "DNA",
"text": [
"Sp1 consensus sequences"
],
"offsets": [
[
33,
56
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.204.ent6_0",
"type": "cell",
"text": [
"Hep3B cells"
],
"offsets": [
[
60,
71
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.204.ent7_0",
"type": "chemical",
"text": [
"TSA"
],
"offsets": [
[
6,
9
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "444732"
}
]
},
{
"id": "1.0alpha7.train.204.ent8_1",
"type": "chemical",
"text": [
"TSA"
],
"offsets": [
[
97,
100
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "444732"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.204.coref0",
"entity_ids": [
"1.0alpha7.train.204.ent0_0"
]
},
{
"id": "1.0alpha7.train.204.coref1",
"entity_ids": [
"1.0alpha7.train.204.ent1_0",
"1.0alpha7.train.204.ent2_1",
"1.0alpha7.train.204.ent3_2",
"1.0alpha7.train.204.ent4_3"
]
},
{
"id": "1.0alpha7.train.204.coref2",
"entity_ids": [
"1.0alpha7.train.204.ent5_0"
]
},
{
"id": "1.0alpha7.train.204.coref3",
"entity_ids": [
"1.0alpha7.train.204.ent6_0"
]
},
{
"id": "1.0alpha7.train.204.coref4",
"entity_ids": [
"1.0alpha7.train.204.ent7_0",
"1.0alpha7.train.204.ent8_1"
]
}
] |
[
{
"id": "1.0alpha7.train.204.rel0s1.0alpha7.train.204.ent1_0.o1.0alpha7.train.204.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.204.ent1_0",
"arg2_id": "1.0alpha7.train.204.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.204.rel0s1.0alpha7.train.204.ent2_1.o1.0alpha7.train.204.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.204.ent2_1",
"arg2_id": "1.0alpha7.train.204.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.204.rel0s1.0alpha7.train.204.ent3_2.o1.0alpha7.train.204.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.204.ent3_2",
"arg2_id": "1.0alpha7.train.204.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.204.rel0s1.0alpha7.train.204.ent4_3.o1.0alpha7.train.204.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.204.ent4_3",
"arg2_id": "1.0alpha7.train.204.ent5_0",
"normalized": []
}
] |
1.0alpha7.train.205
|
21745005
|
[
{
"id": "1.0alpha7.train.205.sent",
"type": "sentence",
"text": [
"Systemic administration of 3-NPA (30 mg kg-1 per day for 3 days) induced a 170% increase in [3]- PK 11195 binding, and expression of HSP27."
],
"offsets": [
[
0,
139
]
]
}
] |
[
{
"id": "1.0alpha7.train.205.ent0_0",
"type": "protein",
"text": [
"HSP27"
],
"offsets": [
[
133,
138
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3315"
},
{
"db_name": "hgnc",
"db_id": "HSPB1"
},
{
"db_name": "uniprot",
"db_id": "P04792"
}
]
},
{
"id": "1.0alpha7.train.205.ent1_0",
"type": "chemical",
"text": [
"[3]- PK 11195"
],
"offsets": [
[
92,
105
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "1345"
}
]
},
{
"id": "1.0alpha7.train.205.ent2_0",
"type": "chemical",
"text": [
"3-NPA"
],
"offsets": [
[
27,
32
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "1678"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.205.coref0",
"entity_ids": [
"1.0alpha7.train.205.ent0_0"
]
},
{
"id": "1.0alpha7.train.205.coref1",
"entity_ids": [
"1.0alpha7.train.205.ent1_0"
]
},
{
"id": "1.0alpha7.train.205.coref2",
"entity_ids": [
"1.0alpha7.train.205.ent2_0"
]
}
] |
[] |
1.0alpha7.train.206
|
22146010
|
[
{
"id": "1.0alpha7.train.206.sent",
"type": "sentence",
"text": [
"This interpretation is consistent with stopped flow experiments on the formation of the catalytic complex, which were interpreted as evidence that the second dIII binds to the dI dimer with a Kd of 20-50 M [ 24]."
],
"offsets": [
[
0,
212
]
]
}
] |
[
{
"id": "1.0alpha7.train.206.ent0_0",
"type": "protein",
"text": [
"dI"
],
"offsets": [
[
176,
178
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.206.ent1_0",
"type": "protein",
"text": [
"dIII"
],
"offsets": [
[
158,
162
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.206.coref0",
"entity_ids": [
"1.0alpha7.train.206.ent0_0"
]
},
{
"id": "1.0alpha7.train.206.coref1",
"entity_ids": [
"1.0alpha7.train.206.ent1_0"
]
}
] |
[
{
"id": "1.0alpha7.train.206.rel0s1.0alpha7.train.206.ent0_0.o1.0alpha7.train.206.ent0_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.206.ent0_0",
"arg2_id": "1.0alpha7.train.206.ent0_0",
"normalized": []
},
{
"id": "1.0alpha7.train.206.rel1s1.0alpha7.train.206.ent0_0.o1.0alpha7.train.206.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.206.ent0_0",
"arg2_id": "1.0alpha7.train.206.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.207
|
10369809
|
[
{
"id": "1.0alpha7.train.207.sent",
"type": "sentence",
"text": [
"75 89 90 91 Two of them, A63V and K70T, are located in exon 2b within the consensus pattern of sequence repeats of alpha-TM and could alter tropomyosin binding to actin."
],
"offsets": [
[
0,
169
]
]
}
] |
[
{
"id": "1.0alpha7.train.207.ent0_0",
"type": "protein-family",
"text": [
"alpha-TM"
],
"offsets": [
[
115,
123
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00261"
}
]
},
{
"id": "1.0alpha7.train.207.ent1_0",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
163,
168
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
},
{
"id": "1.0alpha7.train.207.ent2_0",
"type": "protein-family",
"text": [
"tropomyosin"
],
"offsets": [
[
140,
151
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00261"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.207.coref0",
"entity_ids": [
"1.0alpha7.train.207.ent0_0"
]
},
{
"id": "1.0alpha7.train.207.coref1",
"entity_ids": [
"1.0alpha7.train.207.ent1_0"
]
},
{
"id": "1.0alpha7.train.207.coref2",
"entity_ids": [
"1.0alpha7.train.207.ent2_0"
]
}
] |
[
{
"id": "1.0alpha7.train.207.rel0s1.0alpha7.train.207.ent1_0.o1.0alpha7.train.207.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.207.ent1_0",
"arg2_id": "1.0alpha7.train.207.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.208
|
639982
|
[
{
"id": "1.0alpha7.train.208.sent",
"type": "sentence",
"text": [
"The majority of gp160 remained bound to calreticulin despite addition of ATP (not shown)."
],
"offsets": [
[
0,
89
]
]
}
] |
[
{
"id": "1.0alpha7.train.208.ent0_0",
"type": "protein",
"text": [
"gp160"
],
"offsets": [
[
16,
21
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "Q0H5Z4"
}
]
},
{
"id": "1.0alpha7.train.208.ent1_0",
"type": "chemical",
"text": [
"ATP"
],
"offsets": [
[
73,
76
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "5957"
}
]
},
{
"id": "1.0alpha7.train.208.ent2_0",
"type": "protein",
"text": [
"calreticulin"
],
"offsets": [
[
40,
52
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "811"
},
{
"db_name": "hgnc",
"db_id": "CALR"
},
{
"db_name": "uniprot",
"db_id": "P27797"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.208.coref0",
"entity_ids": [
"1.0alpha7.train.208.ent0_0"
]
},
{
"id": "1.0alpha7.train.208.coref1",
"entity_ids": [
"1.0alpha7.train.208.ent1_0"
]
},
{
"id": "1.0alpha7.train.208.coref2",
"entity_ids": [
"1.0alpha7.train.208.ent2_0"
]
}
] |
[
{
"id": "1.0alpha7.train.208.rel0s1.0alpha7.train.208.ent0_0.o1.0alpha7.train.208.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.208.ent0_0",
"arg2_id": "1.0alpha7.train.208.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.209
|
23900170
|
[
{
"id": "1.0alpha7.train.209.sent",
"type": "sentence",
"text": [
"Because PIP2 was added in the form of micelles, the effects of actin and PIP2 on profilin binding to gephyrin cannot be compared in terms of affinities."
],
"offsets": [
[
0,
152
]
]
}
] |
[
{
"id": "1.0alpha7.train.209.ent0_0",
"type": "protein",
"text": [
"gephyrin"
],
"offsets": [
[
101,
109
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "10243"
},
{
"db_name": "hgnc",
"db_id": "GPHN"
},
{
"db_name": "uniprot",
"db_id": "Q9NQX3"
}
]
},
{
"id": "1.0alpha7.train.209.ent1_0",
"type": "protein-family",
"text": [
"profilin"
],
"offsets": [
[
81,
89
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR005455"
}
]
},
{
"id": "1.0alpha7.train.209.ent2_0",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
63,
68
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
},
{
"id": "1.0alpha7.train.209.ent3_0",
"type": "chemical",
"text": [
"PIP2"
],
"offsets": [
[
8,
12
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "5497157"
}
]
},
{
"id": "1.0alpha7.train.209.ent4_1",
"type": "chemical",
"text": [
"PIP2"
],
"offsets": [
[
73,
77
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "5497157"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.209.coref0",
"entity_ids": [
"1.0alpha7.train.209.ent0_0"
]
},
{
"id": "1.0alpha7.train.209.coref1",
"entity_ids": [
"1.0alpha7.train.209.ent1_0"
]
},
{
"id": "1.0alpha7.train.209.coref2",
"entity_ids": [
"1.0alpha7.train.209.ent2_0"
]
},
{
"id": "1.0alpha7.train.209.coref3",
"entity_ids": [
"1.0alpha7.train.209.ent3_0",
"1.0alpha7.train.209.ent4_1"
]
}
] |
[
{
"id": "1.0alpha7.train.209.rel0s1.0alpha7.train.209.ent0_0.o1.0alpha7.train.209.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.209.ent0_0",
"arg2_id": "1.0alpha7.train.209.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.210
|
9126838
|
[
{
"id": "1.0alpha7.train.210.sent",
"type": "sentence",
"text": [
"This situation is similar to that of pI cells, where overexpression of the GTP-bound form of Galphai, GalphaiQ205L, also influences the orientation of the spindle."
],
"offsets": [
[
0,
163
]
]
}
] |
[
{
"id": "1.0alpha7.train.210.ent0_0",
"type": "chemical",
"text": [
"GTP"
],
"offsets": [
[
75,
78
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "135398633"
}
]
},
{
"id": "1.0alpha7.train.210.ent1_0",
"type": "protein",
"text": [
"GalphaiQ205L"
],
"offsets": [
[
102,
114
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.210.ent2_0",
"type": "cell",
"text": [
"pI"
],
"offsets": [
[
37,
39
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.210.ent3_0",
"type": "protein",
"text": [
"Galphai"
],
"offsets": [
[
93,
100
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P20353"
}
]
},
{
"id": "1.0alpha7.train.210.ent4_0",
"type": "protein",
"text": [
"GTP-bound form of Galphai"
],
"offsets": [
[
75,
100
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.210.coref0",
"entity_ids": [
"1.0alpha7.train.210.ent0_0"
]
},
{
"id": "1.0alpha7.train.210.coref1",
"entity_ids": [
"1.0alpha7.train.210.ent1_0"
]
},
{
"id": "1.0alpha7.train.210.coref2",
"entity_ids": [
"1.0alpha7.train.210.ent2_0"
]
},
{
"id": "1.0alpha7.train.210.coref3",
"entity_ids": [
"1.0alpha7.train.210.ent3_0"
]
},
{
"id": "1.0alpha7.train.210.coref4",
"entity_ids": [
"1.0alpha7.train.210.ent4_0"
]
}
] |
[
{
"id": "1.0alpha7.train.210.rel0s1.0alpha7.train.210.ent0_0.o1.0alpha7.train.210.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.210.ent0_0",
"arg2_id": "1.0alpha7.train.210.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.211
|
5293344
|
[
{
"id": "1.0alpha7.train.211.sent",
"type": "sentence",
"text": [
"Therefore, we hypothesized that co-stimulatory molecules that preferentially bind CD28 or CTLA-4 would have dramatically altered biological properties."
],
"offsets": [
[
0,
151
]
]
}
] |
[
{
"id": "1.0alpha7.train.211.ent0_0",
"type": "protein",
"text": [
"CD28"
],
"offsets": [
[
82,
86
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "940"
},
{
"db_name": "hgnc",
"db_id": "CD28"
},
{
"db_name": "uniprot",
"db_id": "P10747"
}
]
},
{
"id": "1.0alpha7.train.211.ent1_0",
"type": "protein",
"text": [
"CTLA-4"
],
"offsets": [
[
90,
96
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1493"
},
{
"db_name": "hgnc",
"db_id": "CTLA4"
},
{
"db_name": "uniprot",
"db_id": "P16410"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.211.coref0",
"entity_ids": [
"1.0alpha7.train.211.ent0_0"
]
},
{
"id": "1.0alpha7.train.211.coref1",
"entity_ids": [
"1.0alpha7.train.211.ent1_0"
]
}
] |
[] |
1.0alpha7.train.212
|
9255615
|
[
{
"id": "1.0alpha7.train.212.sent",
"type": "sentence",
"text": [
"Using electrophoretic mobility shift assays (EMSA), we found that Dfd binds to this fragment ( S3/240bpwt; Figure 5D)."
],
"offsets": [
[
0,
118
]
]
}
] |
[
{
"id": "1.0alpha7.train.212.ent0_0",
"type": "experimental-construct",
"text": [
"S3/240bpwt"
],
"offsets": [
[
95,
105
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.212.ent1_0",
"type": "protein",
"text": [
"Dfd"
],
"offsets": [
[
66,
69
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P07548"
}
]
},
{
"id": "1.0alpha7.train.212.ent2_0",
"type": "assay",
"text": [
"EMSA"
],
"offsets": [
[
45,
49
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.212.coref0",
"entity_ids": [
"1.0alpha7.train.212.ent0_0"
]
},
{
"id": "1.0alpha7.train.212.coref1",
"entity_ids": [
"1.0alpha7.train.212.ent1_0"
]
},
{
"id": "1.0alpha7.train.212.coref2",
"entity_ids": [
"1.0alpha7.train.212.ent2_0"
]
}
] |
[] |
1.0alpha7.train.213
|
1356396
|
[
{
"id": "1.0alpha7.train.213.sent",
"type": "sentence",
"text": [
"The INK family has a specificity for the early G1 kinases Cdk4 and Cdk6 complexed with D-type cyclins, while the CIP family is partial to Cdk2 bound to either cyclin A or E."
],
"offsets": [
[
0,
173
]
]
}
] |
[
{
"id": "1.0alpha7.train.213.ent0_0",
"type": "protein-family",
"text": [
"D-type cyclins"
],
"offsets": [
[
87,
101
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR015451"
}
]
},
{
"id": "1.0alpha7.train.213.ent1_0",
"type": "protein",
"text": [
"E"
],
"offsets": [
[
171,
172
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.213.ent2_0",
"type": "protein",
"text": [
"cyclin A"
],
"offsets": [
[
159,
167
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "8900"
},
{
"db_name": "hgnc",
"db_id": "CCNA1"
},
{
"db_name": "uniprot",
"db_id": "P78396"
}
]
},
{
"id": "1.0alpha7.train.213.ent3_0",
"type": "protein-family",
"text": [
"INK family"
],
"offsets": [
[
4,
14
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.213.ent4_0",
"type": "protein",
"text": [
"Cdk2"
],
"offsets": [
[
138,
142
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1017"
},
{
"db_name": "hgnc",
"db_id": "CDK2"
},
{
"db_name": "uniprot",
"db_id": "P24941"
}
]
},
{
"id": "1.0alpha7.train.213.ent5_0",
"type": "protein",
"text": [
"Cdk4"
],
"offsets": [
[
58,
62
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1019"
},
{
"db_name": "hgnc",
"db_id": "CDK4"
},
{
"db_name": "uniprot",
"db_id": "P11802"
}
]
},
{
"id": "1.0alpha7.train.213.ent6_0",
"type": "protein",
"text": [
"Cdk6"
],
"offsets": [
[
67,
71
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1021"
},
{
"db_name": "hgnc",
"db_id": "CDK6"
},
{
"db_name": "uniprot",
"db_id": "Q00534"
}
]
},
{
"id": "1.0alpha7.train.213.ent7_0",
"type": "protein-family",
"text": [
"CIP family"
],
"offsets": [
[
113,
123
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.213.coref0",
"entity_ids": [
"1.0alpha7.train.213.ent0_0"
]
},
{
"id": "1.0alpha7.train.213.coref1",
"entity_ids": [
"1.0alpha7.train.213.ent1_0"
]
},
{
"id": "1.0alpha7.train.213.coref2",
"entity_ids": [
"1.0alpha7.train.213.ent2_0"
]
},
{
"id": "1.0alpha7.train.213.coref3",
"entity_ids": [
"1.0alpha7.train.213.ent3_0"
]
},
{
"id": "1.0alpha7.train.213.coref4",
"entity_ids": [
"1.0alpha7.train.213.ent4_0"
]
},
{
"id": "1.0alpha7.train.213.coref5",
"entity_ids": [
"1.0alpha7.train.213.ent5_0"
]
},
{
"id": "1.0alpha7.train.213.coref6",
"entity_ids": [
"1.0alpha7.train.213.ent6_0"
]
},
{
"id": "1.0alpha7.train.213.coref7",
"entity_ids": [
"1.0alpha7.train.213.ent7_0"
]
}
] |
[
{
"id": "1.0alpha7.train.213.rel0s1.0alpha7.train.213.ent0_0.o1.0alpha7.train.213.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.213.ent0_0",
"arg2_id": "1.0alpha7.train.213.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.213.rel1s1.0alpha7.train.213.ent0_0.o1.0alpha7.train.213.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.213.ent0_0",
"arg2_id": "1.0alpha7.train.213.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.213.rel2s1.0alpha7.train.213.ent2_0.o1.0alpha7.train.213.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.213.ent2_0",
"arg2_id": "1.0alpha7.train.213.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.213.rel3s1.0alpha7.train.213.ent1_0.o1.0alpha7.train.213.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.213.ent1_0",
"arg2_id": "1.0alpha7.train.213.ent4_0",
"normalized": []
}
] |
1.0alpha7.train.214
|
19530807
|
[
{
"id": "1.0alpha7.train.214.sent",
"type": "sentence",
"text": [
"These results suggest that most of the synergistic coactivation by CRP2 requires efficient binding of SRF to multiple SREs."
],
"offsets": [
[
0,
123
]
]
}
] |
[
{
"id": "1.0alpha7.train.214.ent0_0",
"type": "DNA",
"text": [
"SREs"
],
"offsets": [
[
118,
122
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.214.ent1_0",
"type": "protein",
"text": [
"SRF"
],
"offsets": [
[
102,
105
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6722"
},
{
"db_name": "hgnc",
"db_id": "SRF"
},
{
"db_name": "uniprot",
"db_id": "P11831"
}
]
},
{
"id": "1.0alpha7.train.214.ent2_0",
"type": "protein",
"text": [
"CRP2"
],
"offsets": [
[
67,
71
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1466"
},
{
"db_name": "hgnc",
"db_id": "CSRP2"
},
{
"db_name": "uniprot",
"db_id": "Q16527"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.214.coref0",
"entity_ids": [
"1.0alpha7.train.214.ent0_0"
]
},
{
"id": "1.0alpha7.train.214.coref1",
"entity_ids": [
"1.0alpha7.train.214.ent1_0"
]
},
{
"id": "1.0alpha7.train.214.coref2",
"entity_ids": [
"1.0alpha7.train.214.ent2_0"
]
}
] |
[
{
"id": "1.0alpha7.train.214.rel0s1.0alpha7.train.214.ent0_0.o1.0alpha7.train.214.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.214.ent0_0",
"arg2_id": "1.0alpha7.train.214.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.215
|
7548236
|
[
{
"id": "1.0alpha7.train.215.sent",
"type": "sentence",
"text": [
"These membrane lipids bind to the actin-binding domains of AC ( Yonezawa et al 1991a, Kusano et al 1999) and are capable of inhibiting AC binding to actin in vitro."
],
"offsets": [
[
0,
164
]
]
}
] |
[
{
"id": "1.0alpha7.train.215.ent0_0",
"type": "protein-family",
"text": [
"AC"
],
"offsets": [
[
59,
61
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.215.ent1_1",
"type": "protein-family",
"text": [
"AC"
],
"offsets": [
[
135,
137
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.215.ent2_0",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
34,
39
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
},
{
"id": "1.0alpha7.train.215.ent3_1",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
149,
154
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
},
{
"id": "1.0alpha7.train.215.ent4_0",
"type": "chemical",
"text": [
"lipids"
],
"offsets": [
[
15,
21
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.215.coref0",
"entity_ids": [
"1.0alpha7.train.215.ent0_0",
"1.0alpha7.train.215.ent1_1"
]
},
{
"id": "1.0alpha7.train.215.coref1",
"entity_ids": [
"1.0alpha7.train.215.ent2_0",
"1.0alpha7.train.215.ent3_1"
]
},
{
"id": "1.0alpha7.train.215.coref2",
"entity_ids": [
"1.0alpha7.train.215.ent4_0"
]
}
] |
[
{
"id": "1.0alpha7.train.215.rel0s1.0alpha7.train.215.ent0_0.o1.0alpha7.train.215.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.215.ent0_0",
"arg2_id": "1.0alpha7.train.215.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.215.rel0s1.0alpha7.train.215.ent0_0.o1.0alpha7.train.215.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.215.ent0_0",
"arg2_id": "1.0alpha7.train.215.ent3_1",
"normalized": []
},
{
"id": "1.0alpha7.train.215.rel0s1.0alpha7.train.215.ent1_1.o1.0alpha7.train.215.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.215.ent1_1",
"arg2_id": "1.0alpha7.train.215.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.215.rel0s1.0alpha7.train.215.ent1_1.o1.0alpha7.train.215.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.215.ent1_1",
"arg2_id": "1.0alpha7.train.215.ent3_1",
"normalized": []
},
{
"id": "1.0alpha7.train.215.rel1s1.0alpha7.train.215.ent0_0.o1.0alpha7.train.215.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.215.ent0_0",
"arg2_id": "1.0alpha7.train.215.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.215.rel1s1.0alpha7.train.215.ent1_1.o1.0alpha7.train.215.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.215.ent1_1",
"arg2_id": "1.0alpha7.train.215.ent4_0",
"normalized": []
}
] |
1.0alpha7.train.216
|
2066872
|
[
{
"id": "1.0alpha7.train.216.sent",
"type": "sentence",
"text": [
"In addition, Redlitz et al. (10) showed that activated pro-plasma carboxypeptidase B and plasma carboxypeptidase N diminish the binding of plasminogen to U937 cells and that fibrinolysis occurs more rapidly in pro-plasma carboxypeptidase B (TAFI)-deficient compared with normal plasma."
],
"offsets": [
[
0,
285
]
]
}
] |
[
{
"id": "1.0alpha7.train.216.ent0_0",
"type": "cell",
"text": [
"U937"
],
"offsets": [
[
154,
158
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.216.ent1_0",
"type": "protein",
"text": [
"carboxypeptidase B"
],
"offsets": [
[
66,
84
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1360"
},
{
"db_name": "hgnc",
"db_id": "CPB1"
},
{
"db_name": "uniprot",
"db_id": "P15086"
}
]
},
{
"id": "1.0alpha7.train.216.ent2_1",
"type": "protein",
"text": [
"carboxypeptidase B"
],
"offsets": [
[
221,
239
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1360"
},
{
"db_name": "hgnc",
"db_id": "CPB1"
},
{
"db_name": "uniprot",
"db_id": "P15086"
}
]
},
{
"id": "1.0alpha7.train.216.ent3_0",
"type": "protein",
"text": [
"plasminogen"
],
"offsets": [
[
139,
150
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5340"
},
{
"db_name": "hgnc",
"db_id": "PLG"
},
{
"db_name": "uniprot",
"db_id": "P00747"
}
]
},
{
"id": "1.0alpha7.train.216.ent4_0",
"type": "protein",
"text": [
"carboxypeptidase N"
],
"offsets": [
[
96,
114
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1369"
},
{
"db_name": "hgnc",
"db_id": "CPN1"
},
{
"db_name": "uniprot",
"db_id": "P15169"
}
]
},
{
"id": "1.0alpha7.train.216.ent5_0",
"type": "protein",
"text": [
"TAFI"
],
"offsets": [
[
241,
245
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1361"
},
{
"db_name": "hgnc",
"db_id": "CPB2"
},
{
"db_name": "uniprot",
"db_id": "Q96IY4"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.216.coref0",
"entity_ids": [
"1.0alpha7.train.216.ent0_0"
]
},
{
"id": "1.0alpha7.train.216.coref1",
"entity_ids": [
"1.0alpha7.train.216.ent1_0",
"1.0alpha7.train.216.ent2_1"
]
},
{
"id": "1.0alpha7.train.216.coref2",
"entity_ids": [
"1.0alpha7.train.216.ent3_0"
]
},
{
"id": "1.0alpha7.train.216.coref3",
"entity_ids": [
"1.0alpha7.train.216.ent4_0"
]
},
{
"id": "1.0alpha7.train.216.coref4",
"entity_ids": [
"1.0alpha7.train.216.ent5_0"
]
}
] |
[] |
1.0alpha7.train.217
|
206727
|
[
{
"id": "1.0alpha7.train.217.sent",
"type": "sentence",
"text": [
"Tyrosine Phosphorylation of p190 Correlates with Enhanced p120 GAP Binding in Vivo; Because p120 protein preferentially binds phosphorylated p190 in vitro, we compared the levels of native p120•p190 complex formation in normal 3Y1 rat fibroblasts and v-Src-transformed 3Y1 cells (SR3Y1)."
],
"offsets": [
[
0,
287
]
]
}
] |
[
{
"id": "1.0alpha7.train.217.ent0_0",
"type": "cell",
"text": [
"SR3Y1"
],
"offsets": [
[
280,
285
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.217.ent1_0",
"type": "cell",
"text": [
"v-Src-transformed 3Y1 cells"
],
"offsets": [
[
251,
278
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.217.ent2_0",
"type": "protein",
"text": [
"p190"
],
"offsets": [
[
28,
32
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2909"
},
{
"db_name": "hgnc",
"db_id": "ARHGAP35"
},
{
"db_name": "uniprot",
"db_id": "Q9NRY4"
}
]
},
{
"id": "1.0alpha7.train.217.ent3_1",
"type": "protein",
"text": [
"p190"
],
"offsets": [
[
141,
145
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2909"
},
{
"db_name": "hgnc",
"db_id": "ARHGAP35"
},
{
"db_name": "uniprot",
"db_id": "Q9NRY4"
}
]
},
{
"id": "1.0alpha7.train.217.ent4_2",
"type": "protein",
"text": [
"p190"
],
"offsets": [
[
194,
198
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2909"
},
{
"db_name": "hgnc",
"db_id": "ARHGAP35"
},
{
"db_name": "uniprot",
"db_id": "Q9NRY4"
}
]
},
{
"id": "1.0alpha7.train.217.ent5_0",
"type": "cell",
"text": [
"3Y1 rat fibroblasts"
],
"offsets": [
[
227,
246
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.217.ent6_0",
"type": "protein",
"text": [
"p120 GAP"
],
"offsets": [
[
58,
66
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5921"
},
{
"db_name": "hgnc",
"db_id": "RASA1"
},
{
"db_name": "uniprot",
"db_id": "P20936"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.217.coref0",
"entity_ids": [
"1.0alpha7.train.217.ent0_0",
"1.0alpha7.train.217.ent1_0"
]
},
{
"id": "1.0alpha7.train.217.coref1",
"entity_ids": [
"1.0alpha7.train.217.ent2_0",
"1.0alpha7.train.217.ent3_1",
"1.0alpha7.train.217.ent4_2"
]
},
{
"id": "1.0alpha7.train.217.coref2",
"entity_ids": [
"1.0alpha7.train.217.ent5_0"
]
},
{
"id": "1.0alpha7.train.217.coref3",
"entity_ids": [
"1.0alpha7.train.217.ent6_0"
]
}
] |
[
{
"id": "1.0alpha7.train.217.rel0s1.0alpha7.train.217.ent2_0.o1.0alpha7.train.217.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.217.ent2_0",
"arg2_id": "1.0alpha7.train.217.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.217.rel0s1.0alpha7.train.217.ent3_1.o1.0alpha7.train.217.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.217.ent3_1",
"arg2_id": "1.0alpha7.train.217.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.217.rel0s1.0alpha7.train.217.ent4_2.o1.0alpha7.train.217.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.217.ent4_2",
"arg2_id": "1.0alpha7.train.217.ent6_0",
"normalized": []
}
] |
1.0alpha7.train.218
|
3554320
|
[
{
"id": "1.0alpha7.train.218.sent",
"type": "sentence",
"text": [
"Furthermore, we determined that this regionalized editing of the collagen substrate was orchestrated by the stimulated expression of collagenase-1, which was bound to the SMC plasma membrane."
],
"offsets": [
[
0,
191
]
]
}
] |
[
{
"id": "1.0alpha7.train.218.ent0_0",
"type": "protein-family",
"text": [
"collagen"
],
"offsets": [
[
65,
73
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.218.ent1_0",
"type": "cell",
"text": [
"SMC"
],
"offsets": [
[
171,
174
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.218.ent2_0",
"type": "protein",
"text": [
"collagenase-1"
],
"offsets": [
[
133,
146
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4312"
},
{
"db_name": "hgnc",
"db_id": "MMP1"
},
{
"db_name": "uniprot",
"db_id": "P03956"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.218.coref0",
"entity_ids": [
"1.0alpha7.train.218.ent0_0"
]
},
{
"id": "1.0alpha7.train.218.coref1",
"entity_ids": [
"1.0alpha7.train.218.ent1_0"
]
},
{
"id": "1.0alpha7.train.218.coref2",
"entity_ids": [
"1.0alpha7.train.218.ent2_0"
]
}
] |
[] |
1.0alpha7.train.219
|
15995413
|
[
{
"id": "1.0alpha7.train.219.sent",
"type": "sentence",
"text": [
"After transfection of vectors expressing MUC1 and GSK3beta, 293 cells were subjected to immunoprecipitation with anti-MUC1 and the precipitates were analyzed for binding of MUC1 to beta-catenin."
],
"offsets": [
[
0,
194
]
]
}
] |
[
{
"id": "1.0alpha7.train.219.ent0_0",
"type": "protein",
"text": [
"beta-catenin"
],
"offsets": [
[
181,
193
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1499"
},
{
"db_name": "hgnc",
"db_id": "CTNNB1"
},
{
"db_name": "uniprot",
"db_id": "P35222"
}
]
},
{
"id": "1.0alpha7.train.219.ent1_0",
"type": "protein",
"text": [
"MUC1"
],
"offsets": [
[
41,
45
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4582"
},
{
"db_name": "hgnc",
"db_id": "MUC1"
}
]
},
{
"id": "1.0alpha7.train.219.ent2_1",
"type": "protein",
"text": [
"MUC1"
],
"offsets": [
[
118,
122
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4582"
},
{
"db_name": "hgnc",
"db_id": "MUC1"
}
]
},
{
"id": "1.0alpha7.train.219.ent3_2",
"type": "protein",
"text": [
"MUC1"
],
"offsets": [
[
173,
177
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4582"
},
{
"db_name": "hgnc",
"db_id": "MUC1"
}
]
},
{
"id": "1.0alpha7.train.219.ent4_0",
"type": "reagent",
"text": [
"anti-MUC1"
],
"offsets": [
[
113,
122
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.219.ent5_0",
"type": "protein",
"text": [
"GSK3beta"
],
"offsets": [
[
50,
58
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2932"
},
{
"db_name": "hgnc",
"db_id": "GSK3B"
},
{
"db_name": "uniprot",
"db_id": "P49841"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.219.coref0",
"entity_ids": [
"1.0alpha7.train.219.ent0_0"
]
},
{
"id": "1.0alpha7.train.219.coref1",
"entity_ids": [
"1.0alpha7.train.219.ent1_0",
"1.0alpha7.train.219.ent2_1",
"1.0alpha7.train.219.ent3_2"
]
},
{
"id": "1.0alpha7.train.219.coref2",
"entity_ids": [
"1.0alpha7.train.219.ent4_0"
]
},
{
"id": "1.0alpha7.train.219.coref3",
"entity_ids": [
"1.0alpha7.train.219.ent5_0"
]
}
] |
[] |
1.0alpha7.train.220
|
20571476
|
[
{
"id": "1.0alpha7.train.220.sent",
"type": "sentence",
"text": [
"This orientation shows the actin-binding surface of profilin [14,15] , which is predominately composed of the C-terminal helix (H3) and the bottom three strands ( 4, 5 and 6) of the central sheet."
],
"offsets": [
[
0,
196
]
]
}
] |
[
{
"id": "1.0alpha7.train.220.ent0_0",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
27,
32
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
},
{
"id": "1.0alpha7.train.220.ent1_0",
"type": "protein-family",
"text": [
"profilin"
],
"offsets": [
[
52,
60
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR005455"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.220.coref0",
"entity_ids": [
"1.0alpha7.train.220.ent0_0"
]
},
{
"id": "1.0alpha7.train.220.coref1",
"entity_ids": [
"1.0alpha7.train.220.ent1_0"
]
}
] |
[
{
"id": "1.0alpha7.train.220.rel0s1.0alpha7.train.220.ent0_0.o1.0alpha7.train.220.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.220.ent0_0",
"arg2_id": "1.0alpha7.train.220.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.221
|
19503598
|
[
{
"id": "1.0alpha7.train.221.sent",
"type": "sentence",
"text": [
"Binding of Cdc20 and Cdh1 to the APC is differentially regulated."
],
"offsets": [
[
0,
65
]
]
}
] |
[
{
"id": "1.0alpha7.train.221.ent0_0",
"type": "protein",
"text": [
"Cdh1"
],
"offsets": [
[
21,
25
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "999"
},
{
"db_name": "hgnc",
"db_id": "CDH1"
},
{
"db_name": "uniprot",
"db_id": "P12830"
}
]
},
{
"id": "1.0alpha7.train.221.ent1_0",
"type": "protein",
"text": [
"APC"
],
"offsets": [
[
33,
36
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "324"
},
{
"db_name": "hgnc",
"db_id": "APC"
}
]
},
{
"id": "1.0alpha7.train.221.ent2_0",
"type": "protein",
"text": [
"Cdc20"
],
"offsets": [
[
11,
16
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "991"
},
{
"db_name": "hgnc",
"db_id": "CDC20"
},
{
"db_name": "uniprot",
"db_id": "Q12834"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.221.coref0",
"entity_ids": [
"1.0alpha7.train.221.ent0_0"
]
},
{
"id": "1.0alpha7.train.221.coref1",
"entity_ids": [
"1.0alpha7.train.221.ent1_0"
]
},
{
"id": "1.0alpha7.train.221.coref2",
"entity_ids": [
"1.0alpha7.train.221.ent2_0"
]
}
] |
[
{
"id": "1.0alpha7.train.221.rel0s1.0alpha7.train.221.ent1_0.o1.0alpha7.train.221.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.221.ent1_0",
"arg2_id": "1.0alpha7.train.221.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.221.rel1s1.0alpha7.train.221.ent0_0.o1.0alpha7.train.221.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.221.ent0_0",
"arg2_id": "1.0alpha7.train.221.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.222
|
12684514
|
[
{
"id": "1.0alpha7.train.222.sent",
"type": "sentence",
"text": [
"With the goal of learning more about the mechanisms responsible for insulating activity, we have identified and characterized SBP ( scs binding protein), a protein component of the scs nucleoprotein complex."
],
"offsets": [
[
0,
207
]
]
}
] |
[
{
"id": "1.0alpha7.train.222.ent0_0",
"type": "protein",
"text": [
"SBP"
],
"offsets": [
[
126,
129
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.222.ent1_0",
"type": "protein",
"text": [
"scs binding protein"
],
"offsets": [
[
132,
151
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.222.ent2_0",
"type": "protein-complex",
"text": [
"scs"
],
"offsets": [
[
132,
135
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.222.ent3_1",
"type": "protein-complex",
"text": [
"scs"
],
"offsets": [
[
181,
184
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.222.coref0",
"entity_ids": [
"1.0alpha7.train.222.ent0_0",
"1.0alpha7.train.222.ent1_0"
]
},
{
"id": "1.0alpha7.train.222.coref1",
"entity_ids": [
"1.0alpha7.train.222.ent2_0",
"1.0alpha7.train.222.ent3_1"
]
}
] |
[
{
"id": "1.0alpha7.train.222.rel0s1.0alpha7.train.222.ent0_0.o1.0alpha7.train.222.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.222.ent0_0",
"arg2_id": "1.0alpha7.train.222.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.222.rel0s1.0alpha7.train.222.ent0_0.o1.0alpha7.train.222.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.222.ent0_0",
"arg2_id": "1.0alpha7.train.222.ent3_1",
"normalized": []
},
{
"id": "1.0alpha7.train.222.rel0s1.0alpha7.train.222.ent1_0.o1.0alpha7.train.222.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.222.ent1_0",
"arg2_id": "1.0alpha7.train.222.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.222.rel0s1.0alpha7.train.222.ent1_0.o1.0alpha7.train.222.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.222.ent1_0",
"arg2_id": "1.0alpha7.train.222.ent3_1",
"normalized": []
}
] |
1.0alpha7.train.223
|
4871993
|
[
{
"id": "1.0alpha7.train.223.sent",
"type": "sentence",
"text": [
"Thus, the binding of Porc with Wg appears to be necessary for the stimulation of the N-glycosylation of Wg."
],
"offsets": [
[
0,
107
]
]
}
] |
[
{
"id": "1.0alpha7.train.223.ent0_0",
"type": "protein",
"text": [
"Wg"
],
"offsets": [
[
31,
33
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P09615"
}
]
},
{
"id": "1.0alpha7.train.223.ent1_1",
"type": "protein",
"text": [
"Wg"
],
"offsets": [
[
104,
106
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P09615"
}
]
},
{
"id": "1.0alpha7.train.223.ent2_0",
"type": "protein",
"text": [
"Porc"
],
"offsets": [
[
21,
25
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3145"
},
{
"db_name": "hgnc",
"db_id": "HMBS"
},
{
"db_name": "uniprot",
"db_id": "P08397"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.223.coref0",
"entity_ids": [
"1.0alpha7.train.223.ent0_0",
"1.0alpha7.train.223.ent1_1"
]
},
{
"id": "1.0alpha7.train.223.coref1",
"entity_ids": [
"1.0alpha7.train.223.ent2_0"
]
}
] |
[
{
"id": "1.0alpha7.train.223.rel0s1.0alpha7.train.223.ent0_0.o1.0alpha7.train.223.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.223.ent0_0",
"arg2_id": "1.0alpha7.train.223.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.223.rel0s1.0alpha7.train.223.ent1_1.o1.0alpha7.train.223.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.223.ent1_1",
"arg2_id": "1.0alpha7.train.223.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.224
|
19761788
|
[
{
"id": "1.0alpha7.train.224.sent",
"type": "sentence",
"text": [
"Pals1 (or Sdt) binds to the Crb-PBM motif (CrbPBM) via its single PDZ domain."
],
"offsets": [
[
0,
77
]
]
}
] |
[
{
"id": "1.0alpha7.train.224.ent0_0",
"type": "protein",
"text": [
"Sdt"
],
"offsets": [
[
10,
13
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "64398"
},
{
"db_name": "hgnc",
"db_id": "MPP5"
},
{
"db_name": "uniprot",
"db_id": "Q8N3R9"
}
]
},
{
"id": "1.0alpha7.train.224.ent1_0",
"type": "protein",
"text": [
"Pals1"
],
"offsets": [
[
0,
5
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "64398"
},
{
"db_name": "hgnc",
"db_id": "MPP5"
},
{
"db_name": "uniprot",
"db_id": "Q8N3R9"
}
]
},
{
"id": "1.0alpha7.train.224.ent2_0",
"type": "protein-motif",
"text": [
"CrbPBM"
],
"offsets": [
[
43,
49
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.224.ent3_0",
"type": "protein-motif",
"text": [
"Crb-PBM motif"
],
"offsets": [
[
28,
41
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.224.ent4_0",
"type": "protein-domain",
"text": [
"PDZ"
],
"offsets": [
[
66,
69
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR001478"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.224.coref0",
"entity_ids": [
"1.0alpha7.train.224.ent0_0",
"1.0alpha7.train.224.ent1_0"
]
},
{
"id": "1.0alpha7.train.224.coref1",
"entity_ids": [
"1.0alpha7.train.224.ent2_0",
"1.0alpha7.train.224.ent3_0"
]
},
{
"id": "1.0alpha7.train.224.coref2",
"entity_ids": [
"1.0alpha7.train.224.ent4_0"
]
}
] |
[] |
1.0alpha7.train.225
|
13846927
|
[
{
"id": "1.0alpha7.train.225.sent",
"type": "sentence",
"text": [
"Under these conditions, Hbp binds heme in a 1:1 molar ratio (unpublished data)."
],
"offsets": [
[
0,
79
]
]
}
] |
[
{
"id": "1.0alpha7.train.225.ent0_0",
"type": "protein",
"text": [
"Hbp"
],
"offsets": [
[
24,
27
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "566"
},
{
"db_name": "hgnc",
"db_id": "AZU1"
},
{
"db_name": "uniprot",
"db_id": "P20160"
}
]
},
{
"id": "1.0alpha7.train.225.ent1_0",
"type": "chemical",
"text": [
"heme"
],
"offsets": [
[
34,
38
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "26945"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.225.coref0",
"entity_ids": [
"1.0alpha7.train.225.ent0_0"
]
},
{
"id": "1.0alpha7.train.225.coref1",
"entity_ids": [
"1.0alpha7.train.225.ent1_0"
]
}
] |
[
{
"id": "1.0alpha7.train.225.rel0s1.0alpha7.train.225.ent0_0.o1.0alpha7.train.225.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.225.ent0_0",
"arg2_id": "1.0alpha7.train.225.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.226
|
3506549
|
[
{
"id": "1.0alpha7.train.226.sent",
"type": "sentence",
"text": [
"Both Axin and Axil bind not only to GSK-3beta but also to beta-catenin and APC ( 14-20) and promote GSK-3beta-dependent phosphorylation of beta-catenin and APC ( 14, 15, 19, 21, 22)."
],
"offsets": [
[
0,
182
]
]
}
] |
[
{
"id": "1.0alpha7.train.226.ent0_0",
"type": "protein",
"text": [
"Axil"
],
"offsets": [
[
14,
18
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "8313"
},
{
"db_name": "hgnc",
"db_id": "AXIN2"
},
{
"db_name": "uniprot",
"db_id": "A0A087WXP8"
}
]
},
{
"id": "1.0alpha7.train.226.ent1_0",
"type": "protein",
"text": [
"beta-catenin"
],
"offsets": [
[
58,
70
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1499"
},
{
"db_name": "hgnc",
"db_id": "CTNNB1"
},
{
"db_name": "uniprot",
"db_id": "P35222"
}
]
},
{
"id": "1.0alpha7.train.226.ent2_1",
"type": "protein",
"text": [
"beta-catenin"
],
"offsets": [
[
139,
151
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1499"
},
{
"db_name": "hgnc",
"db_id": "CTNNB1"
},
{
"db_name": "uniprot",
"db_id": "P35222"
}
]
},
{
"id": "1.0alpha7.train.226.ent3_0",
"type": "protein",
"text": [
"Axin"
],
"offsets": [
[
5,
9
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "8312"
},
{
"db_name": "hgnc",
"db_id": "AXIN1"
},
{
"db_name": "uniprot",
"db_id": "O15169"
}
]
},
{
"id": "1.0alpha7.train.226.ent4_0",
"type": "protein",
"text": [
"GSK-3beta"
],
"offsets": [
[
36,
45
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2932"
},
{
"db_name": "hgnc",
"db_id": "GSK3B"
},
{
"db_name": "uniprot",
"db_id": "P49841"
}
]
},
{
"id": "1.0alpha7.train.226.ent5_1",
"type": "protein",
"text": [
"GSK-3beta"
],
"offsets": [
[
100,
109
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2932"
},
{
"db_name": "hgnc",
"db_id": "GSK3B"
},
{
"db_name": "uniprot",
"db_id": "P49841"
}
]
},
{
"id": "1.0alpha7.train.226.ent6_0",
"type": "protein",
"text": [
"APC"
],
"offsets": [
[
75,
78
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "324"
},
{
"db_name": "hgnc",
"db_id": "APC"
}
]
},
{
"id": "1.0alpha7.train.226.ent7_1",
"type": "protein",
"text": [
"APC"
],
"offsets": [
[
156,
159
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "324"
},
{
"db_name": "hgnc",
"db_id": "APC"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.226.coref0",
"entity_ids": [
"1.0alpha7.train.226.ent0_0"
]
},
{
"id": "1.0alpha7.train.226.coref1",
"entity_ids": [
"1.0alpha7.train.226.ent1_0",
"1.0alpha7.train.226.ent2_1"
]
},
{
"id": "1.0alpha7.train.226.coref2",
"entity_ids": [
"1.0alpha7.train.226.ent3_0"
]
},
{
"id": "1.0alpha7.train.226.coref3",
"entity_ids": [
"1.0alpha7.train.226.ent4_0",
"1.0alpha7.train.226.ent5_1"
]
},
{
"id": "1.0alpha7.train.226.coref4",
"entity_ids": [
"1.0alpha7.train.226.ent6_0",
"1.0alpha7.train.226.ent7_1"
]
}
] |
[
{
"id": "1.0alpha7.train.226.rel0s1.0alpha7.train.226.ent3_0.o1.0alpha7.train.226.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.226.ent3_0",
"arg2_id": "1.0alpha7.train.226.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.226.rel0s1.0alpha7.train.226.ent3_0.o1.0alpha7.train.226.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.226.ent3_0",
"arg2_id": "1.0alpha7.train.226.ent5_1",
"normalized": []
},
{
"id": "1.0alpha7.train.226.rel1s1.0alpha7.train.226.ent1_0.o1.0alpha7.train.226.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.226.ent1_0",
"arg2_id": "1.0alpha7.train.226.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.226.rel1s1.0alpha7.train.226.ent2_1.o1.0alpha7.train.226.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.226.ent2_1",
"arg2_id": "1.0alpha7.train.226.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.226.rel2s1.0alpha7.train.226.ent3_0.o1.0alpha7.train.226.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.226.ent3_0",
"arg2_id": "1.0alpha7.train.226.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.226.rel2s1.0alpha7.train.226.ent3_0.o1.0alpha7.train.226.ent7_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.226.ent3_0",
"arg2_id": "1.0alpha7.train.226.ent7_1",
"normalized": []
},
{
"id": "1.0alpha7.train.226.rel3s1.0alpha7.train.226.ent0_0.o1.0alpha7.train.226.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.226.ent0_0",
"arg2_id": "1.0alpha7.train.226.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.226.rel3s1.0alpha7.train.226.ent0_0.o1.0alpha7.train.226.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.226.ent0_0",
"arg2_id": "1.0alpha7.train.226.ent5_1",
"normalized": []
},
{
"id": "1.0alpha7.train.226.rel4s1.0alpha7.train.226.ent0_0.o1.0alpha7.train.226.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.226.ent0_0",
"arg2_id": "1.0alpha7.train.226.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.226.rel4s1.0alpha7.train.226.ent0_0.o1.0alpha7.train.226.ent2_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.226.ent0_0",
"arg2_id": "1.0alpha7.train.226.ent2_1",
"normalized": []
},
{
"id": "1.0alpha7.train.226.rel5s1.0alpha7.train.226.ent0_0.o1.0alpha7.train.226.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.226.ent0_0",
"arg2_id": "1.0alpha7.train.226.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.226.rel5s1.0alpha7.train.226.ent0_0.o1.0alpha7.train.226.ent7_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.226.ent0_0",
"arg2_id": "1.0alpha7.train.226.ent7_1",
"normalized": []
}
] |
1.0alpha7.train.227
|
11347599
|
[
{
"id": "1.0alpha7.train.227.sent",
"type": "sentence",
"text": [
"Even though transportin can bind an M9 signal and the BIB domain simultaneously, it appears unlikely that transportin normally would import the two substrates at the same time: import of the trimeric M9-transportin-BIB complex is apparently much less efficient than import of, for example, an M9-transportin complex (not shown)."
],
"offsets": [
[
0,
328
]
]
}
] |
[
{
"id": "1.0alpha7.train.227.ent0_0",
"type": "protein",
"text": [
"transportin"
],
"offsets": [
[
12,
23
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3842"
},
{
"db_name": "hgnc",
"db_id": "TNPO1"
},
{
"db_name": "uniprot",
"db_id": "Q92973"
}
]
},
{
"id": "1.0alpha7.train.227.ent1_1",
"type": "protein",
"text": [
"transportin"
],
"offsets": [
[
106,
117
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3842"
},
{
"db_name": "hgnc",
"db_id": "TNPO1"
},
{
"db_name": "uniprot",
"db_id": "Q92973"
}
]
},
{
"id": "1.0alpha7.train.227.ent2_2",
"type": "protein",
"text": [
"transportin"
],
"offsets": [
[
203,
214
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3842"
},
{
"db_name": "hgnc",
"db_id": "TNPO1"
},
{
"db_name": "uniprot",
"db_id": "Q92973"
}
]
},
{
"id": "1.0alpha7.train.227.ent3_3",
"type": "protein",
"text": [
"transportin"
],
"offsets": [
[
296,
307
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3842"
},
{
"db_name": "hgnc",
"db_id": "TNPO1"
},
{
"db_name": "uniprot",
"db_id": "Q92973"
}
]
},
{
"id": "1.0alpha7.train.227.ent4_0",
"type": "protein-motif",
"text": [
"M9 signal"
],
"offsets": [
[
36,
45
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.227.ent5_0",
"type": "protein-complex",
"text": [
"M9-transportin-BIB"
],
"offsets": [
[
200,
218
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.227.ent6_0",
"type": "protein-domain",
"text": [
"BIB domain"
],
"offsets": [
[
54,
64
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.227.ent7_0",
"type": "protein-complex",
"text": [
"M9-transportin"
],
"offsets": [
[
200,
214
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.227.ent8_1",
"type": "protein-complex",
"text": [
"M9-transportin"
],
"offsets": [
[
293,
307
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.227.coref0",
"entity_ids": [
"1.0alpha7.train.227.ent0_0",
"1.0alpha7.train.227.ent1_1",
"1.0alpha7.train.227.ent2_2",
"1.0alpha7.train.227.ent3_3"
]
},
{
"id": "1.0alpha7.train.227.coref1",
"entity_ids": [
"1.0alpha7.train.227.ent4_0"
]
},
{
"id": "1.0alpha7.train.227.coref2",
"entity_ids": [
"1.0alpha7.train.227.ent5_0"
]
},
{
"id": "1.0alpha7.train.227.coref3",
"entity_ids": [
"1.0alpha7.train.227.ent6_0"
]
},
{
"id": "1.0alpha7.train.227.coref4",
"entity_ids": [
"1.0alpha7.train.227.ent7_0",
"1.0alpha7.train.227.ent8_1"
]
}
] |
[
{
"id": "1.0alpha7.train.227.rel0s1.0alpha7.train.227.ent0_0.o1.0alpha7.train.227.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.227.ent0_0",
"arg2_id": "1.0alpha7.train.227.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.227.rel0s1.0alpha7.train.227.ent1_1.o1.0alpha7.train.227.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.227.ent1_1",
"arg2_id": "1.0alpha7.train.227.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.227.rel0s1.0alpha7.train.227.ent2_2.o1.0alpha7.train.227.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.227.ent2_2",
"arg2_id": "1.0alpha7.train.227.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.227.rel0s1.0alpha7.train.227.ent3_3.o1.0alpha7.train.227.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.227.ent3_3",
"arg2_id": "1.0alpha7.train.227.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.227.rel1s1.0alpha7.train.227.ent0_0.o1.0alpha7.train.227.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.227.ent0_0",
"arg2_id": "1.0alpha7.train.227.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.227.rel1s1.0alpha7.train.227.ent1_1.o1.0alpha7.train.227.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.227.ent1_1",
"arg2_id": "1.0alpha7.train.227.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.227.rel1s1.0alpha7.train.227.ent2_2.o1.0alpha7.train.227.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.227.ent2_2",
"arg2_id": "1.0alpha7.train.227.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.227.rel1s1.0alpha7.train.227.ent3_3.o1.0alpha7.train.227.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.227.ent3_3",
"arg2_id": "1.0alpha7.train.227.ent6_0",
"normalized": []
}
] |
1.0alpha7.train.228
|
19530653
|
[
{
"id": "1.0alpha7.train.228.sent",
"type": "sentence",
"text": [
"In vitro, HUA1 binds three tested AG RNA fragments from the second intron, one including the 5 splice site and the other two including the putative polyadenylation sites for the large AG RNAs."
],
"offsets": [
[
0,
192
]
]
}
] |
[
{
"id": "1.0alpha7.train.228.ent0_0",
"type": "RNA",
"text": [
"AG RNA"
],
"offsets": [
[
34,
40
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.228.ent1_0",
"type": "protein",
"text": [
"HUA1"
],
"offsets": [
[
10,
14
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "Q941Q3"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.228.coref0",
"entity_ids": [
"1.0alpha7.train.228.ent0_0"
]
},
{
"id": "1.0alpha7.train.228.coref1",
"entity_ids": [
"1.0alpha7.train.228.ent1_0"
]
}
] |
[
{
"id": "1.0alpha7.train.228.rel0s1.0alpha7.train.228.ent0_0.o1.0alpha7.train.228.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.228.ent0_0",
"arg2_id": "1.0alpha7.train.228.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.229
|
11405650
|
[
{
"id": "1.0alpha7.train.229.sent",
"type": "sentence",
"text": [
"Nature, 377, 246-248 [Medline] orlich, D. , Henklein, P. , Laskey, R.A. and Hartmann, E. (1996a) A 41 amino acid motif in importin alpha confers binding to importin beta and hence transit into the nucleus."
],
"offsets": [
[
0,
205
]
]
}
] |
[
{
"id": "1.0alpha7.train.229.ent0_0",
"type": "protein-family",
"text": [
"importin alpha"
],
"offsets": [
[
122,
136
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR040122"
}
]
},
{
"id": "1.0alpha7.train.229.ent1_0",
"type": "protein-family",
"text": [
"importin beta"
],
"offsets": [
[
156,
169
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR040122"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.229.coref0",
"entity_ids": [
"1.0alpha7.train.229.ent0_0"
]
},
{
"id": "1.0alpha7.train.229.coref1",
"entity_ids": [
"1.0alpha7.train.229.ent1_0"
]
}
] |
[
{
"id": "1.0alpha7.train.229.rel0s1.0alpha7.train.229.ent0_0.o1.0alpha7.train.229.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.229.ent0_0",
"arg2_id": "1.0alpha7.train.229.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.230
|
1570746
|
[
{
"id": "1.0alpha7.train.230.sent",
"type": "sentence",
"text": [
"In addition, we show that the gelsolin S1 peptide PS1 does not hinder binding of cofilin or PS2 to F-actin; this also argues against the model proposed by Hatanaka et al. ( 24)."
],
"offsets": [
[
0,
177
]
]
}
] |
[
{
"id": "1.0alpha7.train.230.ent0_0",
"type": "experimental-construct",
"text": [
"gelsolin S1"
],
"offsets": [
[
30,
41
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.230.ent1_0",
"type": "protein",
"text": [
"F-actin"
],
"offsets": [
[
99,
106
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.230.ent2_0",
"type": "protein",
"text": [
"gelsolin"
],
"offsets": [
[
30,
38
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2934"
},
{
"db_name": "hgnc",
"db_id": "GSN"
},
{
"db_name": "uniprot",
"db_id": "P06396"
}
]
},
{
"id": "1.0alpha7.train.230.ent3_0",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
101,
106
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR004000"
}
]
},
{
"id": "1.0alpha7.train.230.ent4_0",
"type": "experimental-construct",
"text": [
"PS2"
],
"offsets": [
[
92,
95
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.230.ent5_0",
"type": "protein",
"text": [
"cofilin"
],
"offsets": [
[
81,
88
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1072"
},
{
"db_name": "hgnc",
"db_id": "CFL1"
},
{
"db_name": "uniprot",
"db_id": "P23528"
}
]
},
{
"id": "1.0alpha7.train.230.ent6_0",
"type": "experimental-construct",
"text": [
"PS1"
],
"offsets": [
[
50,
53
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.230.coref0",
"entity_ids": [
"1.0alpha7.train.230.ent0_0"
]
},
{
"id": "1.0alpha7.train.230.coref1",
"entity_ids": [
"1.0alpha7.train.230.ent1_0"
]
},
{
"id": "1.0alpha7.train.230.coref2",
"entity_ids": [
"1.0alpha7.train.230.ent2_0"
]
},
{
"id": "1.0alpha7.train.230.coref3",
"entity_ids": [
"1.0alpha7.train.230.ent3_0"
]
},
{
"id": "1.0alpha7.train.230.coref4",
"entity_ids": [
"1.0alpha7.train.230.ent4_0"
]
},
{
"id": "1.0alpha7.train.230.coref5",
"entity_ids": [
"1.0alpha7.train.230.ent5_0"
]
},
{
"id": "1.0alpha7.train.230.coref6",
"entity_ids": [
"1.0alpha7.train.230.ent6_0"
]
}
] |
[
{
"id": "1.0alpha7.train.230.rel0s1.0alpha7.train.230.ent1_0.o1.0alpha7.train.230.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.230.ent1_0",
"arg2_id": "1.0alpha7.train.230.ent5_0",
"normalized": []
}
] |
1.0alpha7.train.231
|
15937016
|
[
{
"id": "1.0alpha7.train.231.sent",
"type": "sentence",
"text": [
"Furthermore, it has been shown that GSK-3beta phosphorylates APC and that the phosphorylation enhances the binding of APC to beta-catenin ( 37)."
],
"offsets": [
[
0,
144
]
]
}
] |
[
{
"id": "1.0alpha7.train.231.ent0_0",
"type": "protein",
"text": [
"APC"
],
"offsets": [
[
61,
64
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "324"
},
{
"db_name": "hgnc",
"db_id": "APC"
}
]
},
{
"id": "1.0alpha7.train.231.ent1_1",
"type": "protein",
"text": [
"APC"
],
"offsets": [
[
118,
121
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "324"
},
{
"db_name": "hgnc",
"db_id": "APC"
}
]
},
{
"id": "1.0alpha7.train.231.ent2_0",
"type": "protein",
"text": [
"GSK-3beta"
],
"offsets": [
[
36,
45
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2932"
},
{
"db_name": "hgnc",
"db_id": "GSK3B"
},
{
"db_name": "uniprot",
"db_id": "P49841"
}
]
},
{
"id": "1.0alpha7.train.231.ent3_0",
"type": "protein",
"text": [
"beta-catenin"
],
"offsets": [
[
125,
137
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1499"
},
{
"db_name": "hgnc",
"db_id": "CTNNB1"
},
{
"db_name": "uniprot",
"db_id": "P35222"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.231.coref0",
"entity_ids": [
"1.0alpha7.train.231.ent0_0",
"1.0alpha7.train.231.ent1_1"
]
},
{
"id": "1.0alpha7.train.231.coref1",
"entity_ids": [
"1.0alpha7.train.231.ent2_0"
]
},
{
"id": "1.0alpha7.train.231.coref2",
"entity_ids": [
"1.0alpha7.train.231.ent3_0"
]
}
] |
[
{
"id": "1.0alpha7.train.231.rel0s1.0alpha7.train.231.ent0_0.o1.0alpha7.train.231.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.231.ent0_0",
"arg2_id": "1.0alpha7.train.231.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.231.rel0s1.0alpha7.train.231.ent1_1.o1.0alpha7.train.231.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.231.ent1_1",
"arg2_id": "1.0alpha7.train.231.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.232
|
9049233
|
[
{
"id": "1.0alpha7.train.232.sent",
"type": "sentence",
"text": [
"Binding of FasL to Fas or cross-linking Fas with agonistic antibodies (IgM class anti-Fas antibody, or IgG3 class anti-APO1 antibody) induces apoptosis in Fas-bearing cells (Trauth et al., 1989 ; Yonehara et al., 1989 ; Itoh et al., 1991 )."
],
"offsets": [
[
0,
240
]
]
}
] |
[
{
"id": "1.0alpha7.train.232.ent0_0",
"type": "protein",
"text": [
"FasL"
],
"offsets": [
[
11,
15
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "356"
},
{
"db_name": "hgnc",
"db_id": "FASLG"
},
{
"db_name": "uniprot",
"db_id": "P48023"
}
]
},
{
"id": "1.0alpha7.train.232.ent1_0",
"type": "protein",
"text": [
"Fas"
],
"offsets": [
[
19,
22
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "355"
},
{
"db_name": "hgnc",
"db_id": "FAS"
},
{
"db_name": "uniprot",
"db_id": "P25445"
}
]
},
{
"id": "1.0alpha7.train.232.ent2_1",
"type": "protein",
"text": [
"Fas"
],
"offsets": [
[
40,
43
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "355"
},
{
"db_name": "hgnc",
"db_id": "FAS"
},
{
"db_name": "uniprot",
"db_id": "P25445"
}
]
},
{
"id": "1.0alpha7.train.232.ent3_2",
"type": "protein",
"text": [
"Fas"
],
"offsets": [
[
86,
89
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "355"
},
{
"db_name": "hgnc",
"db_id": "FAS"
},
{
"db_name": "uniprot",
"db_id": "P25445"
}
]
},
{
"id": "1.0alpha7.train.232.ent4_3",
"type": "protein",
"text": [
"Fas"
],
"offsets": [
[
155,
158
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "355"
},
{
"db_name": "hgnc",
"db_id": "FAS"
},
{
"db_name": "uniprot",
"db_id": "P25445"
}
]
},
{
"id": "1.0alpha7.train.232.ent5_0",
"type": "reagent",
"text": [
"anti-APO1 antibody"
],
"offsets": [
[
114,
132
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.232.ent6_0",
"type": "reagent",
"text": [
"IgG3"
],
"offsets": [
[
103,
107
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.232.ent7_0",
"type": "reagent",
"text": [
"anti-Fas antibody"
],
"offsets": [
[
81,
98
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.232.ent8_0",
"type": "reagent",
"text": [
"IgM"
],
"offsets": [
[
71,
74
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.232.coref0",
"entity_ids": [
"1.0alpha7.train.232.ent0_0"
]
},
{
"id": "1.0alpha7.train.232.coref1",
"entity_ids": [
"1.0alpha7.train.232.ent1_0",
"1.0alpha7.train.232.ent2_1",
"1.0alpha7.train.232.ent3_2",
"1.0alpha7.train.232.ent4_3"
]
},
{
"id": "1.0alpha7.train.232.coref2",
"entity_ids": [
"1.0alpha7.train.232.ent5_0"
]
},
{
"id": "1.0alpha7.train.232.coref3",
"entity_ids": [
"1.0alpha7.train.232.ent6_0"
]
},
{
"id": "1.0alpha7.train.232.coref4",
"entity_ids": [
"1.0alpha7.train.232.ent7_0"
]
},
{
"id": "1.0alpha7.train.232.coref5",
"entity_ids": [
"1.0alpha7.train.232.ent8_0"
]
}
] |
[
{
"id": "1.0alpha7.train.232.rel0s1.0alpha7.train.232.ent0_0.o1.0alpha7.train.232.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.232.ent0_0",
"arg2_id": "1.0alpha7.train.232.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.232.rel0s1.0alpha7.train.232.ent0_0.o1.0alpha7.train.232.ent2_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.232.ent0_0",
"arg2_id": "1.0alpha7.train.232.ent2_1",
"normalized": []
},
{
"id": "1.0alpha7.train.232.rel0s1.0alpha7.train.232.ent0_0.o1.0alpha7.train.232.ent3_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.232.ent0_0",
"arg2_id": "1.0alpha7.train.232.ent3_2",
"normalized": []
},
{
"id": "1.0alpha7.train.232.rel0s1.0alpha7.train.232.ent0_0.o1.0alpha7.train.232.ent4_3",
"type": "bind",
"arg1_id": "1.0alpha7.train.232.ent0_0",
"arg2_id": "1.0alpha7.train.232.ent4_3",
"normalized": []
}
] |
1.0alpha7.train.233
|
6238942
|
[
{
"id": "1.0alpha7.train.233.sent",
"type": "sentence",
"text": [
"( B) ELISA demonstrating the reduced binding of the Ab to BDNF after modification with the caging group and its successful reactivation by UV light."
],
"offsets": [
[
0,
148
]
]
}
] |
[
{
"id": "1.0alpha7.train.233.ent0_0",
"type": "protein",
"text": [
"BDNF"
],
"offsets": [
[
58,
62
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "627"
},
{
"db_name": "hgnc",
"db_id": "BDNF"
}
]
},
{
"id": "1.0alpha7.train.233.ent1_0",
"type": "process",
"text": [
"UV"
],
"offsets": [
[
139,
141
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.233.ent2_0",
"type": "assay",
"text": [
"ELISA"
],
"offsets": [
[
5,
10
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.233.ent3_0",
"type": "reagent",
"text": [
"Ab"
],
"offsets": [
[
52,
54
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.233.coref0",
"entity_ids": [
"1.0alpha7.train.233.ent0_0"
]
},
{
"id": "1.0alpha7.train.233.coref1",
"entity_ids": [
"1.0alpha7.train.233.ent1_0"
]
},
{
"id": "1.0alpha7.train.233.coref2",
"entity_ids": [
"1.0alpha7.train.233.ent2_0"
]
},
{
"id": "1.0alpha7.train.233.coref3",
"entity_ids": [
"1.0alpha7.train.233.ent3_0"
]
}
] |
[] |
1.0alpha7.train.234
|
4397443
|
[
{
"id": "1.0alpha7.train.234.sent",
"type": "sentence",
"text": [
"Immunoprecipitation of p53 was followed by Western blot analysis to determine the type and level of Mdm2 bound to p53 under each of these conditions."
],
"offsets": [
[
0,
149
]
]
}
] |
[
{
"id": "1.0alpha7.train.234.ent0_0",
"type": "protein",
"text": [
"Mdm2"
],
"offsets": [
[
100,
104
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4193"
},
{
"db_name": "hgnc",
"db_id": "MDM2"
},
{
"db_name": "uniprot",
"db_id": "E7EPE2"
}
]
},
{
"id": "1.0alpha7.train.234.ent1_0",
"type": "protein",
"text": [
"p53"
],
"offsets": [
[
23,
26
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7157"
},
{
"db_name": "hgnc",
"db_id": "TP53"
},
{
"db_name": "uniprot",
"db_id": "P04637"
}
]
},
{
"id": "1.0alpha7.train.234.ent2_1",
"type": "protein",
"text": [
"p53"
],
"offsets": [
[
114,
117
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7157"
},
{
"db_name": "hgnc",
"db_id": "TP53"
},
{
"db_name": "uniprot",
"db_id": "P04637"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.234.coref0",
"entity_ids": [
"1.0alpha7.train.234.ent0_0"
]
},
{
"id": "1.0alpha7.train.234.coref1",
"entity_ids": [
"1.0alpha7.train.234.ent1_0",
"1.0alpha7.train.234.ent2_1"
]
}
] |
[
{
"id": "1.0alpha7.train.234.rel0s1.0alpha7.train.234.ent0_0.o1.0alpha7.train.234.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.234.ent0_0",
"arg2_id": "1.0alpha7.train.234.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.234.rel0s1.0alpha7.train.234.ent0_0.o1.0alpha7.train.234.ent2_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.234.ent0_0",
"arg2_id": "1.0alpha7.train.234.ent2_1",
"normalized": []
}
] |
1.0alpha7.train.235
|
2477089
|
[
{
"id": "1.0alpha7.train.235.sent",
"type": "sentence",
"text": [
"Binding of E1A to CBP amino acids 1805-1891 prevents binding of the histone acetyltransferase P/CAF, whereas E1A binding to CBP amino acids 2058-2163 prevents binding of the co-activator P/CIP ( 5, 12)."
],
"offsets": [
[
0,
202
]
]
}
] |
[
{
"id": "1.0alpha7.train.235.ent0_0",
"type": "protein",
"text": [
"E1A"
],
"offsets": [
[
11,
14
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P03255"
}
]
},
{
"id": "1.0alpha7.train.235.ent1_1",
"type": "protein",
"text": [
"E1A"
],
"offsets": [
[
109,
112
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P03255"
}
]
},
{
"id": "1.0alpha7.train.235.ent2_0",
"type": "protein",
"text": [
"CBP"
],
"offsets": [
[
18,
21
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1387"
},
{
"db_name": "hgnc",
"db_id": "CREBBP"
},
{
"db_name": "uniprot",
"db_id": "Q92793"
}
]
},
{
"id": "1.0alpha7.train.235.ent3_1",
"type": "protein",
"text": [
"CBP"
],
"offsets": [
[
124,
127
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1387"
},
{
"db_name": "hgnc",
"db_id": "CREBBP"
},
{
"db_name": "uniprot",
"db_id": "Q92793"
}
]
},
{
"id": "1.0alpha7.train.235.ent4_0",
"type": "protein",
"text": [
"P/CIP"
],
"offsets": [
[
187,
192
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.235.ent5_0",
"type": "protein",
"text": [
"histone acetyltransferase P/CAF"
],
"offsets": [
[
68,
99
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "8850"
},
{
"db_name": "hgnc",
"db_id": "KAT2B"
},
{
"db_name": "uniprot",
"db_id": "Q92831"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.235.coref0",
"entity_ids": [
"1.0alpha7.train.235.ent0_0",
"1.0alpha7.train.235.ent1_1"
]
},
{
"id": "1.0alpha7.train.235.coref1",
"entity_ids": [
"1.0alpha7.train.235.ent2_0",
"1.0alpha7.train.235.ent3_1"
]
},
{
"id": "1.0alpha7.train.235.coref2",
"entity_ids": [
"1.0alpha7.train.235.ent4_0"
]
},
{
"id": "1.0alpha7.train.235.coref3",
"entity_ids": [
"1.0alpha7.train.235.ent5_0"
]
}
] |
[
{
"id": "1.0alpha7.train.235.rel0s1.0alpha7.train.235.ent0_0.o1.0alpha7.train.235.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.235.ent0_0",
"arg2_id": "1.0alpha7.train.235.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.235.rel0s1.0alpha7.train.235.ent0_0.o1.0alpha7.train.235.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.235.ent0_0",
"arg2_id": "1.0alpha7.train.235.ent3_1",
"normalized": []
},
{
"id": "1.0alpha7.train.235.rel0s1.0alpha7.train.235.ent1_1.o1.0alpha7.train.235.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.235.ent1_1",
"arg2_id": "1.0alpha7.train.235.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.235.rel0s1.0alpha7.train.235.ent1_1.o1.0alpha7.train.235.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.235.ent1_1",
"arg2_id": "1.0alpha7.train.235.ent3_1",
"normalized": []
}
] |
1.0alpha7.train.236
|
3115715
|
[
{
"id": "1.0alpha7.train.236.sent",
"type": "sentence",
"text": [
"As expected, conversion of the TAGA element into a consensus TATA box increased f:TFIID binding to the LRP-2 promoter, leading to increased protection of the TATA box region and downstream promoter sequences (Fig. 4 B, comparelanes 1–4 with lanes 5–8). "
],
"offsets": [
[
0,
253
]
]
}
] |
[
{
"id": "1.0alpha7.train.236.ent0_0",
"type": "DNA",
"text": [
"TATA box"
],
"offsets": [
[
61,
69
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.236.ent1_1",
"type": "DNA",
"text": [
"TATA box"
],
"offsets": [
[
158,
166
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.236.ent2_0",
"type": "DNA",
"text": [
"LRP-2 promoter"
],
"offsets": [
[
103,
117
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.236.ent3_0",
"type": "experiment-tag",
"text": [
"f"
],
"offsets": [
[
80,
81
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.236.ent4_0",
"type": "fusion-protein",
"text": [
"f:TFIID"
],
"offsets": [
[
80,
87
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.236.ent5_0",
"type": "protein",
"text": [
"TFIID"
],
"offsets": [
[
82,
87
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6908"
},
{
"db_name": "hgnc",
"db_id": "TBP"
},
{
"db_name": "uniprot",
"db_id": "P20226"
}
]
},
{
"id": "1.0alpha7.train.236.ent6_0",
"type": "DNA",
"text": [
"TAGA element"
],
"offsets": [
[
31,
43
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.236.coref0",
"entity_ids": [
"1.0alpha7.train.236.ent0_0",
"1.0alpha7.train.236.ent1_1"
]
},
{
"id": "1.0alpha7.train.236.coref1",
"entity_ids": [
"1.0alpha7.train.236.ent2_0"
]
},
{
"id": "1.0alpha7.train.236.coref2",
"entity_ids": [
"1.0alpha7.train.236.ent3_0"
]
},
{
"id": "1.0alpha7.train.236.coref3",
"entity_ids": [
"1.0alpha7.train.236.ent4_0"
]
},
{
"id": "1.0alpha7.train.236.coref4",
"entity_ids": [
"1.0alpha7.train.236.ent5_0"
]
},
{
"id": "1.0alpha7.train.236.coref5",
"entity_ids": [
"1.0alpha7.train.236.ent6_0"
]
}
] |
[
{
"id": "1.0alpha7.train.236.rel0s1.0alpha7.train.236.ent2_0.o1.0alpha7.train.236.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.236.ent2_0",
"arg2_id": "1.0alpha7.train.236.ent4_0",
"normalized": []
}
] |
1.0alpha7.train.237
|
1544583
|
[
{
"id": "1.0alpha7.train.237.sent",
"type": "sentence",
"text": [
"The mutation replacing Ser-39 with Ala eliminated the phosphorylation-dependent regulation of actin binding of fascin, indicating that phosphorylation at this site regulates the actin binding ability of fascin."
],
"offsets": [
[
0,
210
]
]
}
] |
[
{
"id": "1.0alpha7.train.237.ent0_0",
"type": "protein",
"text": [
"fascin"
],
"offsets": [
[
111,
117
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6624"
},
{
"db_name": "hgnc",
"db_id": "FSCN1"
},
{
"db_name": "uniprot",
"db_id": "C9JPH9"
}
]
},
{
"id": "1.0alpha7.train.237.ent1_1",
"type": "protein",
"text": [
"fascin"
],
"offsets": [
[
203,
209
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6624"
},
{
"db_name": "hgnc",
"db_id": "FSCN1"
},
{
"db_name": "uniprot",
"db_id": "C9JPH9"
}
]
},
{
"id": "1.0alpha7.train.237.ent2_0",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
94,
99
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
},
{
"id": "1.0alpha7.train.237.ent3_1",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
178,
183
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.237.coref0",
"entity_ids": [
"1.0alpha7.train.237.ent0_0",
"1.0alpha7.train.237.ent1_1"
]
},
{
"id": "1.0alpha7.train.237.coref1",
"entity_ids": [
"1.0alpha7.train.237.ent2_0",
"1.0alpha7.train.237.ent3_1"
]
}
] |
[
{
"id": "1.0alpha7.train.237.rel0s1.0alpha7.train.237.ent0_0.o1.0alpha7.train.237.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.237.ent0_0",
"arg2_id": "1.0alpha7.train.237.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.237.rel0s1.0alpha7.train.237.ent0_0.o1.0alpha7.train.237.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.237.ent0_0",
"arg2_id": "1.0alpha7.train.237.ent3_1",
"normalized": []
},
{
"id": "1.0alpha7.train.237.rel0s1.0alpha7.train.237.ent1_1.o1.0alpha7.train.237.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.237.ent1_1",
"arg2_id": "1.0alpha7.train.237.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.237.rel0s1.0alpha7.train.237.ent1_1.o1.0alpha7.train.237.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.237.ent1_1",
"arg2_id": "1.0alpha7.train.237.ent3_1",
"normalized": []
}
] |
1.0alpha7.train.238
|
9128447
|
[
{
"id": "1.0alpha7.train.238.sent",
"type": "sentence",
"text": [
"Slit significantly increased the binding of srGAP1 to Robo1 ( Figure 4C, lane 2, compared to lane 1)."
],
"offsets": [
[
0,
101
]
]
}
] |
[
{
"id": "1.0alpha7.train.238.ent0_0",
"type": "protein",
"text": [
"Robo1"
],
"offsets": [
[
54,
59
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6091"
},
{
"db_name": "hgnc",
"db_id": "ROBO1"
},
{
"db_name": "uniprot",
"db_id": "Q9Y6N7"
}
]
},
{
"id": "1.0alpha7.train.238.ent1_0",
"type": "protein",
"text": [
"Slit"
],
"offsets": [
[
0,
4
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6585"
},
{
"db_name": "hgnc",
"db_id": "SLIT1"
},
{
"db_name": "uniprot",
"db_id": "O75093"
}
]
},
{
"id": "1.0alpha7.train.238.ent2_0",
"type": "protein",
"text": [
"srGAP1"
],
"offsets": [
[
44,
50
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "57522"
},
{
"db_name": "hgnc",
"db_id": "SRGAP1"
},
{
"db_name": "uniprot",
"db_id": "Q7Z6B7"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.238.coref0",
"entity_ids": [
"1.0alpha7.train.238.ent0_0"
]
},
{
"id": "1.0alpha7.train.238.coref1",
"entity_ids": [
"1.0alpha7.train.238.ent1_0"
]
},
{
"id": "1.0alpha7.train.238.coref2",
"entity_ids": [
"1.0alpha7.train.238.ent2_0"
]
}
] |
[
{
"id": "1.0alpha7.train.238.rel0s1.0alpha7.train.238.ent0_0.o1.0alpha7.train.238.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.238.ent0_0",
"arg2_id": "1.0alpha7.train.238.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.239
|
22183532
|
[
{
"id": "1.0alpha7.train.239.sent",
"type": "sentence",
"text": [
"The heparin-binding property of apoE plays an important role in the sequestration step of the heparan sulfate proteoglycan (HSPG)/ LRP metabolic pathway as well as in the independent HSPG pathway [ 5."
],
"offsets": [
[
0,
200
]
]
}
] |
[
{
"id": "1.0alpha7.train.239.ent0_0",
"type": "chemical",
"text": [
"heparin"
],
"offsets": [
[
4,
11
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "772"
}
]
},
{
"id": "1.0alpha7.train.239.ent1_0",
"type": "chemical",
"text": [
"HSPG"
],
"offsets": [
[
124,
128
]
],
"normalized": [
{
"db_name": "pubchem:substance",
"db_id": "53789512"
}
]
},
{
"id": "1.0alpha7.train.239.ent2_1",
"type": "chemical",
"text": [
"HSPG"
],
"offsets": [
[
183,
187
]
],
"normalized": [
{
"db_name": "pubchem:substance",
"db_id": "53789512"
}
]
},
{
"id": "1.0alpha7.train.239.ent3_0",
"type": "chemical",
"text": [
"heparan sulfate proteoglycan"
],
"offsets": [
[
94,
122
]
],
"normalized": [
{
"db_name": "pubchem:substance",
"db_id": "53789512"
}
]
},
{
"id": "1.0alpha7.train.239.ent4_0",
"type": "protein",
"text": [
"apoE"
],
"offsets": [
[
32,
36
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "348"
},
{
"db_name": "hgnc",
"db_id": "APOE"
},
{
"db_name": "uniprot",
"db_id": "P02649"
}
]
},
{
"id": "1.0alpha7.train.239.ent5_0",
"type": "protein-family",
"text": [
"LRP"
],
"offsets": [
[
131,
134
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR019330"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.239.coref0",
"entity_ids": [
"1.0alpha7.train.239.ent0_0"
]
},
{
"id": "1.0alpha7.train.239.coref1",
"entity_ids": [
"1.0alpha7.train.239.ent1_0",
"1.0alpha7.train.239.ent2_1",
"1.0alpha7.train.239.ent3_0"
]
},
{
"id": "1.0alpha7.train.239.coref2",
"entity_ids": [
"1.0alpha7.train.239.ent4_0"
]
},
{
"id": "1.0alpha7.train.239.coref3",
"entity_ids": [
"1.0alpha7.train.239.ent5_0"
]
}
] |
[
{
"id": "1.0alpha7.train.239.rel0s1.0alpha7.train.239.ent0_0.o1.0alpha7.train.239.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.239.ent0_0",
"arg2_id": "1.0alpha7.train.239.ent4_0",
"normalized": []
}
] |
1.0alpha7.train.240
|
992182
|
[
{
"id": "1.0alpha7.train.240.sent",
"type": "sentence",
"text": [
"Full-length p21, which binds to both Cdk-cyclin and PCNA, effectively inhibits DNA replication (Fig. 7 A), whereas GST control protein is not inhibitory."
],
"offsets": [
[
0,
153
]
]
}
] |
[
{
"id": "1.0alpha7.train.240.ent0_0",
"type": "protein",
"text": [
"PCNA"
],
"offsets": [
[
52,
56
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5111"
},
{
"db_name": "hgnc",
"db_id": "PCNA"
},
{
"db_name": "uniprot",
"db_id": "P12004"
}
]
},
{
"id": "1.0alpha7.train.240.ent1_0",
"type": "DNA",
"text": [
"DNA"
],
"offsets": [
[
79,
82
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.240.ent2_0",
"type": "protein-complex",
"text": [
"Cdk-cyclin"
],
"offsets": [
[
37,
47
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.240.ent3_0",
"type": "protein",
"text": [
"p21"
],
"offsets": [
[
12,
15
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1026"
},
{
"db_name": "hgnc",
"db_id": "CDKN1A"
},
{
"db_name": "uniprot",
"db_id": "P38936"
}
]
},
{
"id": "1.0alpha7.train.240.ent4_0",
"type": "protein-family",
"text": [
"GST"
],
"offsets": [
[
115,
118
]
],
"normalized": [
{
"db_name": "intenz",
"db_id": "https://www.ebi.ac.uk/intenz/query?cmd"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.240.coref0",
"entity_ids": [
"1.0alpha7.train.240.ent0_0"
]
},
{
"id": "1.0alpha7.train.240.coref1",
"entity_ids": [
"1.0alpha7.train.240.ent1_0"
]
},
{
"id": "1.0alpha7.train.240.coref2",
"entity_ids": [
"1.0alpha7.train.240.ent2_0"
]
},
{
"id": "1.0alpha7.train.240.coref3",
"entity_ids": [
"1.0alpha7.train.240.ent3_0"
]
},
{
"id": "1.0alpha7.train.240.coref4",
"entity_ids": [
"1.0alpha7.train.240.ent4_0"
]
}
] |
[
{
"id": "1.0alpha7.train.240.rel0s1.0alpha7.train.240.ent2_0.o1.0alpha7.train.240.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.240.ent2_0",
"arg2_id": "1.0alpha7.train.240.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.240.rel1s1.0alpha7.train.240.ent0_0.o1.0alpha7.train.240.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.240.ent0_0",
"arg2_id": "1.0alpha7.train.240.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.241
|
23035520
|
[
{
"id": "1.0alpha7.train.241.sent",
"type": "sentence",
"text": [
"Thus several different mutations that disrupt calcium binding and calcium-dependent syntaxin 1A binding to the C2A domain of synaptotagmin 1 do not reverse the inhibitory effect of microinjected C2A fragments on calcium-regulated secretion from PC12 cells."
],
"offsets": [
[
0,
256
]
]
}
] |
[
{
"id": "1.0alpha7.train.241.ent0_0",
"type": "protein",
"text": [
"syntaxin 1A"
],
"offsets": [
[
84,
95
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6804"
},
{
"db_name": "hgnc",
"db_id": "STX1A"
},
{
"db_name": "uniprot",
"db_id": "Q16623"
}
]
},
{
"id": "1.0alpha7.train.241.ent1_0",
"type": "cell",
"text": [
"PC12"
],
"offsets": [
[
245,
249
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.241.ent2_0",
"type": "protein",
"text": [
"synaptotagmin 1"
],
"offsets": [
[
125,
140
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6857"
},
{
"db_name": "hgnc",
"db_id": "SYT1"
},
{
"db_name": "uniprot",
"db_id": "P21579"
}
]
},
{
"id": "1.0alpha7.train.241.ent3_0",
"type": "chemical",
"text": [
"calcium"
],
"offsets": [
[
46,
53
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "5460341"
}
]
},
{
"id": "1.0alpha7.train.241.ent4_1",
"type": "chemical",
"text": [
"calcium"
],
"offsets": [
[
66,
73
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "5460341"
}
]
},
{
"id": "1.0alpha7.train.241.ent5_2",
"type": "chemical",
"text": [
"calcium"
],
"offsets": [
[
212,
219
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "5460341"
}
]
},
{
"id": "1.0alpha7.train.241.ent6_0",
"type": "reagent",
"text": [
"C2A fragments"
],
"offsets": [
[
195,
208
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.241.ent7_0",
"type": "protein-domain",
"text": [
"C2A domain"
],
"offsets": [
[
111,
121
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.241.coref0",
"entity_ids": [
"1.0alpha7.train.241.ent0_0"
]
},
{
"id": "1.0alpha7.train.241.coref1",
"entity_ids": [
"1.0alpha7.train.241.ent1_0"
]
},
{
"id": "1.0alpha7.train.241.coref2",
"entity_ids": [
"1.0alpha7.train.241.ent2_0"
]
},
{
"id": "1.0alpha7.train.241.coref3",
"entity_ids": [
"1.0alpha7.train.241.ent3_0",
"1.0alpha7.train.241.ent4_1",
"1.0alpha7.train.241.ent5_2"
]
},
{
"id": "1.0alpha7.train.241.coref4",
"entity_ids": [
"1.0alpha7.train.241.ent6_0"
]
},
{
"id": "1.0alpha7.train.241.coref5",
"entity_ids": [
"1.0alpha7.train.241.ent7_0"
]
}
] |
[
{
"id": "1.0alpha7.train.241.rel0s1.0alpha7.train.241.ent2_0.o1.0alpha7.train.241.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.241.ent2_0",
"arg2_id": "1.0alpha7.train.241.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.241.rel0s1.0alpha7.train.241.ent2_0.o1.0alpha7.train.241.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.241.ent2_0",
"arg2_id": "1.0alpha7.train.241.ent4_1",
"normalized": []
},
{
"id": "1.0alpha7.train.241.rel0s1.0alpha7.train.241.ent2_0.o1.0alpha7.train.241.ent5_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.241.ent2_0",
"arg2_id": "1.0alpha7.train.241.ent5_2",
"normalized": []
},
{
"id": "1.0alpha7.train.241.rel1s1.0alpha7.train.241.ent0_0.o1.0alpha7.train.241.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.241.ent0_0",
"arg2_id": "1.0alpha7.train.241.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.242
|
16028298
|
[
{
"id": "1.0alpha7.train.242.sent",
"type": "sentence",
"text": [
"The relative proportion of TBP bound to GST-TADIV of the total present in the crude extract (Fig. 2) was found to be about 1/10 of that of the TAFIIs as determined by densitometric analysis (data not shown)."
],
"offsets": [
[
0,
207
]
]
}
] |
[
{
"id": "1.0alpha7.train.242.ent0_0",
"type": "protein-family",
"text": [
"TAFIIs"
],
"offsets": [
[
143,
149
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.242.ent1_0",
"type": "protein",
"text": [
"TBP"
],
"offsets": [
[
27,
30
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6908"
},
{
"db_name": "hgnc",
"db_id": "TBP"
},
{
"db_name": "uniprot",
"db_id": "P20226"
}
]
},
{
"id": "1.0alpha7.train.242.ent2_0",
"type": "fusion-protein",
"text": [
"GST-TADIV"
],
"offsets": [
[
40,
49
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.242.ent3_0",
"type": "DNA",
"text": [
"TADIV"
],
"offsets": [
[
44,
49
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.242.ent4_0",
"type": "experiment-tag",
"text": [
"GST"
],
"offsets": [
[
40,
43
]
],
"normalized": [
{
"db_name": "intenz",
"db_id": "2.5.1.18"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.242.coref0",
"entity_ids": [
"1.0alpha7.train.242.ent0_0"
]
},
{
"id": "1.0alpha7.train.242.coref1",
"entity_ids": [
"1.0alpha7.train.242.ent1_0"
]
},
{
"id": "1.0alpha7.train.242.coref2",
"entity_ids": [
"1.0alpha7.train.242.ent2_0"
]
},
{
"id": "1.0alpha7.train.242.coref3",
"entity_ids": [
"1.0alpha7.train.242.ent3_0"
]
},
{
"id": "1.0alpha7.train.242.coref4",
"entity_ids": [
"1.0alpha7.train.242.ent4_0"
]
}
] |
[
{
"id": "1.0alpha7.train.242.rel0s1.0alpha7.train.242.ent1_0.o1.0alpha7.train.242.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.242.ent1_0",
"arg2_id": "1.0alpha7.train.242.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.243
|
888051
|
[
{
"id": "1.0alpha7.train.243.sent",
"type": "sentence",
"text": [
"These findings suggest a complex reciprocal relationship between regulation of adducin function by calmodulin binding and phosphorylation by PKA and PKC."
],
"offsets": [
[
0,
153
]
]
}
] |
[
{
"id": "1.0alpha7.train.243.ent0_0",
"type": "protein-family",
"text": [
"PKC"
],
"offsets": [
[
149,
152
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR014376"
}
]
},
{
"id": "1.0alpha7.train.243.ent1_0",
"type": "protein-complex",
"text": [
"PKA"
],
"offsets": [
[
141,
144
]
],
"normalized": [
{
"db_name": "intenz",
"db_id": "https://www.ebi.ac.uk/intenz/query?cmd"
}
]
},
{
"id": "1.0alpha7.train.243.ent2_0",
"type": "protein",
"text": [
"calmodulin"
],
"offsets": [
[
99,
109
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "801"
},
{
"db_name": "hgnc",
"db_id": "CALM1"
},
{
"db_name": "uniprot",
"db_id": "P0DP23"
}
]
},
{
"id": "1.0alpha7.train.243.ent3_0",
"type": "protein",
"text": [
"adducin"
],
"offsets": [
[
79,
86
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "118"
},
{
"db_name": "hgnc",
"db_id": "ADD1"
},
{
"db_name": "uniprot",
"db_id": "P35611"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.243.coref0",
"entity_ids": [
"1.0alpha7.train.243.ent0_0"
]
},
{
"id": "1.0alpha7.train.243.coref1",
"entity_ids": [
"1.0alpha7.train.243.ent1_0"
]
},
{
"id": "1.0alpha7.train.243.coref2",
"entity_ids": [
"1.0alpha7.train.243.ent2_0"
]
},
{
"id": "1.0alpha7.train.243.coref3",
"entity_ids": [
"1.0alpha7.train.243.ent3_0"
]
}
] |
[
{
"id": "1.0alpha7.train.243.rel0s1.0alpha7.train.243.ent2_0.o1.0alpha7.train.243.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.243.ent2_0",
"arg2_id": "1.0alpha7.train.243.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.244
|
18055440
|
[
{
"id": "1.0alpha7.train.244.sent",
"type": "sentence",
"text": [
"At present, we do not know whether Arp11 binds directly to Arp1 or actin."
],
"offsets": [
[
0,
73
]
]
}
] |
[
{
"id": "1.0alpha7.train.244.ent0_0",
"type": "protein",
"text": [
"Arp1"
],
"offsets": [
[
59,
63
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "10121"
},
{
"db_name": "hgnc",
"db_id": "ACTR1A"
},
{
"db_name": "uniprot",
"db_id": "P61163"
}
]
},
{
"id": "1.0alpha7.train.244.ent1_0",
"type": "protein",
"text": [
"Arp11"
],
"offsets": [
[
35,
40
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "55860"
},
{
"db_name": "hgnc",
"db_id": "ACTR10"
},
{
"db_name": "uniprot",
"db_id": "Q9NZ32"
}
]
},
{
"id": "1.0alpha7.train.244.ent2_0",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
67,
72
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.244.coref0",
"entity_ids": [
"1.0alpha7.train.244.ent0_0"
]
},
{
"id": "1.0alpha7.train.244.coref1",
"entity_ids": [
"1.0alpha7.train.244.ent1_0"
]
},
{
"id": "1.0alpha7.train.244.coref2",
"entity_ids": [
"1.0alpha7.train.244.ent2_0"
]
}
] |
[] |
1.0alpha7.train.245
|
19306498
|
[
{
"id": "1.0alpha7.train.245.sent",
"type": "sentence",
"text": [
"In vivo binding of hAxin to APC, -catenin and GSK3 ."
],
"offsets": [
[
0,
52
]
]
}
] |
[
{
"id": "1.0alpha7.train.245.ent0_0",
"type": "protein",
"text": [
"APC"
],
"offsets": [
[
28,
31
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "324"
},
{
"db_name": "hgnc",
"db_id": "APC"
}
]
},
{
"id": "1.0alpha7.train.245.ent1_0",
"type": "protein",
"text": [
"hAxin"
],
"offsets": [
[
19,
24
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "8312"
},
{
"db_name": "hgnc",
"db_id": "AXIN1"
},
{
"db_name": "uniprot",
"db_id": "O15169"
}
]
},
{
"id": "1.0alpha7.train.245.ent2_0",
"type": "protein",
"text": [
"catenin"
],
"offsets": [
[
34,
41
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1495"
},
{
"db_name": "hgnc",
"db_id": "CTNNA1"
},
{
"db_name": "uniprot",
"db_id": "P35221"
}
]
},
{
"id": "1.0alpha7.train.245.ent3_0",
"type": "protein",
"text": [
"GSK3"
],
"offsets": [
[
46,
50
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2931"
},
{
"db_name": "hgnc",
"db_id": "GSK3A"
},
{
"db_name": "uniprot",
"db_id": "P49840"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.245.coref0",
"entity_ids": [
"1.0alpha7.train.245.ent0_0"
]
},
{
"id": "1.0alpha7.train.245.coref1",
"entity_ids": [
"1.0alpha7.train.245.ent1_0"
]
},
{
"id": "1.0alpha7.train.245.coref2",
"entity_ids": [
"1.0alpha7.train.245.ent2_0"
]
},
{
"id": "1.0alpha7.train.245.coref3",
"entity_ids": [
"1.0alpha7.train.245.ent3_0"
]
}
] |
[
{
"id": "1.0alpha7.train.245.rel0s1.0alpha7.train.245.ent0_0.o1.0alpha7.train.245.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.245.ent0_0",
"arg2_id": "1.0alpha7.train.245.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.245.rel1s1.0alpha7.train.245.ent1_0.o1.0alpha7.train.245.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.245.ent1_0",
"arg2_id": "1.0alpha7.train.245.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.245.rel2s1.0alpha7.train.245.ent1_0.o1.0alpha7.train.245.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.245.ent1_0",
"arg2_id": "1.0alpha7.train.245.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.246
|
11440019
|
[
{
"id": "1.0alpha7.train.246.sent",
"type": "sentence",
"text": [
"The ATP-bound form of Hsp70 binds and releases peptides rapidly, whereas the ADP-bound form binds and releases them slowly (Palleros et al., 1991 ; Schmid et al., 1994 ; Szabo et al., 1994 )."
],
"offsets": [
[
0,
191
]
]
}
] |
[
{
"id": "1.0alpha7.train.246.ent0_0",
"type": "protein",
"text": [
"Hsp70"
],
"offsets": [
[
22,
27
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3308"
},
{
"db_name": "hgnc",
"db_id": "HSPA4"
},
{
"db_name": "uniprot",
"db_id": "P34932"
}
]
},
{
"id": "1.0alpha7.train.246.ent1_0",
"type": "protein",
"text": [
"ADP-bound form"
],
"offsets": [
[
77,
91
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.246.ent2_0",
"type": "protein",
"text": [
"ATP-bound form of Hsp70"
],
"offsets": [
[
4,
27
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.246.ent3_0",
"type": "chemical",
"text": [
"ADP"
],
"offsets": [
[
77,
80
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "6022"
}
]
},
{
"id": "1.0alpha7.train.246.ent4_0",
"type": "chemical",
"text": [
"ATP"
],
"offsets": [
[
4,
7
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "5957"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.246.coref0",
"entity_ids": [
"1.0alpha7.train.246.ent0_0"
]
},
{
"id": "1.0alpha7.train.246.coref1",
"entity_ids": [
"1.0alpha7.train.246.ent1_0"
]
},
{
"id": "1.0alpha7.train.246.coref2",
"entity_ids": [
"1.0alpha7.train.246.ent2_0"
]
},
{
"id": "1.0alpha7.train.246.coref3",
"entity_ids": [
"1.0alpha7.train.246.ent3_0"
]
},
{
"id": "1.0alpha7.train.246.coref4",
"entity_ids": [
"1.0alpha7.train.246.ent4_0"
]
}
] |
[
{
"id": "1.0alpha7.train.246.rel0s1.0alpha7.train.246.ent0_0.o1.0alpha7.train.246.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.246.ent0_0",
"arg2_id": "1.0alpha7.train.246.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.246.rel1s1.0alpha7.train.246.ent0_0.o1.0alpha7.train.246.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.246.ent0_0",
"arg2_id": "1.0alpha7.train.246.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.247
|
15546592
|
[
{
"id": "1.0alpha7.train.247.sent",
"type": "sentence",
"text": [
"To confirm the specificity for interaction between EID-1 and Rb in vivo, we tested the binding of endogenous Rb to wild-type EID-1 versus the C180G mutation in transfected mammalian cells."
],
"offsets": [
[
0,
188
]
]
}
] |
[
{
"id": "1.0alpha7.train.247.ent0_0",
"type": "protein",
"text": [
"EID-1"
],
"offsets": [
[
51,
56
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "23741"
},
{
"db_name": "hgnc",
"db_id": "EID1"
},
{
"db_name": "uniprot",
"db_id": "Q9Y6B2"
}
]
},
{
"id": "1.0alpha7.train.247.ent1_1",
"type": "protein",
"text": [
"EID-1"
],
"offsets": [
[
125,
130
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "23741"
},
{
"db_name": "hgnc",
"db_id": "EID1"
},
{
"db_name": "uniprot",
"db_id": "Q9Y6B2"
}
]
},
{
"id": "1.0alpha7.train.247.ent2_0",
"type": "protein",
"text": [
"Rb"
],
"offsets": [
[
61,
63
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5925"
},
{
"db_name": "hgnc",
"db_id": "RB1"
},
{
"db_name": "uniprot",
"db_id": "P06400"
}
]
},
{
"id": "1.0alpha7.train.247.ent3_1",
"type": "protein",
"text": [
"Rb"
],
"offsets": [
[
109,
111
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5925"
},
{
"db_name": "hgnc",
"db_id": "RB1"
},
{
"db_name": "uniprot",
"db_id": "P06400"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.247.coref0",
"entity_ids": [
"1.0alpha7.train.247.ent0_0",
"1.0alpha7.train.247.ent1_1"
]
},
{
"id": "1.0alpha7.train.247.coref1",
"entity_ids": [
"1.0alpha7.train.247.ent2_0",
"1.0alpha7.train.247.ent3_1"
]
}
] |
[
{
"id": "1.0alpha7.train.247.rel0s1.0alpha7.train.247.ent0_0.o1.0alpha7.train.247.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.247.ent0_0",
"arg2_id": "1.0alpha7.train.247.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.247.rel0s1.0alpha7.train.247.ent0_0.o1.0alpha7.train.247.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.247.ent0_0",
"arg2_id": "1.0alpha7.train.247.ent3_1",
"normalized": []
},
{
"id": "1.0alpha7.train.247.rel0s1.0alpha7.train.247.ent1_1.o1.0alpha7.train.247.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.247.ent1_1",
"arg2_id": "1.0alpha7.train.247.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.247.rel0s1.0alpha7.train.247.ent1_1.o1.0alpha7.train.247.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.247.ent1_1",
"arg2_id": "1.0alpha7.train.247.ent3_1",
"normalized": []
}
] |
1.0alpha7.train.248
|
18222181
|
[
{
"id": "1.0alpha7.train.248.sent",
"type": "sentence",
"text": [
"None of the mutations affected the binding of APC11 to APC2 (our unpublished data)."
],
"offsets": [
[
0,
83
]
]
}
] |
[
{
"id": "1.0alpha7.train.248.ent0_0",
"type": "protein",
"text": [
"APC2"
],
"offsets": [
[
55,
59
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "10297"
},
{
"db_name": "hgnc",
"db_id": "APC2"
}
]
},
{
"id": "1.0alpha7.train.248.ent1_0",
"type": "protein",
"text": [
"APC11"
],
"offsets": [
[
46,
51
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "51529"
},
{
"db_name": "hgnc",
"db_id": "ANAPC11"
},
{
"db_name": "uniprot",
"db_id": "Q9NYG5"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.248.coref0",
"entity_ids": [
"1.0alpha7.train.248.ent0_0"
]
},
{
"id": "1.0alpha7.train.248.coref1",
"entity_ids": [
"1.0alpha7.train.248.ent1_0"
]
}
] |
[
{
"id": "1.0alpha7.train.248.rel0s1.0alpha7.train.248.ent0_0.o1.0alpha7.train.248.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.248.ent0_0",
"arg2_id": "1.0alpha7.train.248.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.249
|
9490745
|
[
{
"id": "1.0alpha7.train.249.sent",
"type": "sentence",
"text": [
"In parallel control experiments, all TRP tails failed to bind INAD from InaDP215 head extracts."
],
"offsets": [
[
0,
95
]
]
}
] |
[
{
"id": "1.0alpha7.train.249.ent0_0",
"type": "protein-family",
"text": [
"TRP"
],
"offsets": [
[
37,
40
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR010308"
}
]
},
{
"id": "1.0alpha7.train.249.ent1_0",
"type": "protein",
"text": [
"INAD"
],
"offsets": [
[
62,
66
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "Q24008"
}
]
},
{
"id": "1.0alpha7.train.249.ent2_0",
"type": "gene",
"text": [
"InaDP215"
],
"offsets": [
[
72,
80
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.249.coref0",
"entity_ids": [
"1.0alpha7.train.249.ent0_0"
]
},
{
"id": "1.0alpha7.train.249.coref1",
"entity_ids": [
"1.0alpha7.train.249.ent1_0"
]
},
{
"id": "1.0alpha7.train.249.coref2",
"entity_ids": [
"1.0alpha7.train.249.ent2_0"
]
}
] |
[
{
"id": "1.0alpha7.train.249.rel0s1.0alpha7.train.249.ent0_0.o1.0alpha7.train.249.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.249.ent0_0",
"arg2_id": "1.0alpha7.train.249.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.250
|
15406395
|
[
{
"id": "1.0alpha7.train.250.sent",
"type": "sentence",
"text": [
"Interestingly, we saw strong binding of Gal4 to the GC-rich region, even in the absence of galactose, which agrees with previous work by others, showing that the transcriptional activity of Gal4 is not regulated by its DNA-binding activity but rather by the action of Gal80 and Gal3 (for examples, see references 7 and 31)."
],
"offsets": [
[
0,
323
]
]
}
] |
[
{
"id": "1.0alpha7.train.250.ent0_0",
"type": "protein",
"text": [
"Gal4"
],
"offsets": [
[
40,
44
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3960"
},
{
"db_name": "hgnc",
"db_id": "LGALS4"
},
{
"db_name": "uniprot",
"db_id": "P56470"
}
]
},
{
"id": "1.0alpha7.train.250.ent1_1",
"type": "protein",
"text": [
"Gal4"
],
"offsets": [
[
190,
194
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3960"
},
{
"db_name": "hgnc",
"db_id": "LGALS4"
},
{
"db_name": "uniprot",
"db_id": "P56470"
}
]
},
{
"id": "1.0alpha7.train.250.ent2_0",
"type": "chemical",
"text": [
"galactose"
],
"offsets": [
[
91,
100
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "6036"
}
]
},
{
"id": "1.0alpha7.train.250.ent3_0",
"type": "DNA",
"text": [
"DNA"
],
"offsets": [
[
219,
222
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "25782"
},
{
"db_name": "hgnc",
"db_id": "RAB3GAP2"
},
{
"db_name": "uniprot",
"db_id": "Q9H2M9"
}
]
},
{
"id": "1.0alpha7.train.250.ent4_0",
"type": "protein",
"text": [
"Gal3"
],
"offsets": [
[
278,
282
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P13045"
}
]
},
{
"id": "1.0alpha7.train.250.ent5_0",
"type": "protein",
"text": [
"Gal80"
],
"offsets": [
[
268,
273
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P04387"
}
]
},
{
"id": "1.0alpha7.train.250.ent6_0",
"type": "DNA",
"text": [
"GC-rich region"
],
"offsets": [
[
52,
66
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.250.coref0",
"entity_ids": [
"1.0alpha7.train.250.ent0_0",
"1.0alpha7.train.250.ent1_1"
]
},
{
"id": "1.0alpha7.train.250.coref1",
"entity_ids": [
"1.0alpha7.train.250.ent2_0"
]
},
{
"id": "1.0alpha7.train.250.coref2",
"entity_ids": [
"1.0alpha7.train.250.ent3_0"
]
},
{
"id": "1.0alpha7.train.250.coref3",
"entity_ids": [
"1.0alpha7.train.250.ent4_0"
]
},
{
"id": "1.0alpha7.train.250.coref4",
"entity_ids": [
"1.0alpha7.train.250.ent5_0"
]
},
{
"id": "1.0alpha7.train.250.coref5",
"entity_ids": [
"1.0alpha7.train.250.ent6_0"
]
}
] |
[
{
"id": "1.0alpha7.train.250.rel0s1.0alpha7.train.250.ent0_0.o1.0alpha7.train.250.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.250.ent0_0",
"arg2_id": "1.0alpha7.train.250.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.250.rel0s1.0alpha7.train.250.ent1_1.o1.0alpha7.train.250.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.250.ent1_1",
"arg2_id": "1.0alpha7.train.250.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.250.rel1s1.0alpha7.train.250.ent0_0.o1.0alpha7.train.250.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.250.ent0_0",
"arg2_id": "1.0alpha7.train.250.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.250.rel1s1.0alpha7.train.250.ent1_1.o1.0alpha7.train.250.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.250.ent1_1",
"arg2_id": "1.0alpha7.train.250.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.251
|
25223190
|
[
{
"id": "1.0alpha7.train.251.sent",
"type": "sentence",
"text": [
"Blockade of either VASP binding to ActA ( Smith et al. 1996 ) or Profilin binding to VASP ( Kang et al. 1997 ) impairs Listeria motility, implying a role for Profilin in accelerating the actin-dependent motility."
],
"offsets": [
[
0,
212
]
]
}
] |
[
{
"id": "1.0alpha7.train.251.ent0_0",
"type": "protein",
"text": [
"ActA"
],
"offsets": [
[
35,
39
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "58"
},
{
"db_name": "hgnc",
"db_id": "ACTA1"
},
{
"db_name": "uniprot",
"db_id": "P68133"
}
]
},
{
"id": "1.0alpha7.train.251.ent1_0",
"type": "protein",
"text": [
"VASP"
],
"offsets": [
[
19,
23
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7408"
},
{
"db_name": "hgnc",
"db_id": "VASP"
},
{
"db_name": "uniprot",
"db_id": "P50552"
}
]
},
{
"id": "1.0alpha7.train.251.ent2_1",
"type": "protein",
"text": [
"VASP"
],
"offsets": [
[
85,
89
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7408"
},
{
"db_name": "hgnc",
"db_id": "VASP"
},
{
"db_name": "uniprot",
"db_id": "P50552"
}
]
},
{
"id": "1.0alpha7.train.251.ent3_0",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
187,
192
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
},
{
"id": "1.0alpha7.train.251.ent4_0",
"type": "protein-family",
"text": [
"Profilin"
],
"offsets": [
[
65,
73
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR005455"
}
]
},
{
"id": "1.0alpha7.train.251.ent5_1",
"type": "protein-family",
"text": [
"Profilin"
],
"offsets": [
[
158,
166
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR005455"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.251.coref0",
"entity_ids": [
"1.0alpha7.train.251.ent0_0"
]
},
{
"id": "1.0alpha7.train.251.coref1",
"entity_ids": [
"1.0alpha7.train.251.ent1_0",
"1.0alpha7.train.251.ent2_1"
]
},
{
"id": "1.0alpha7.train.251.coref2",
"entity_ids": [
"1.0alpha7.train.251.ent3_0"
]
},
{
"id": "1.0alpha7.train.251.coref3",
"entity_ids": [
"1.0alpha7.train.251.ent4_0",
"1.0alpha7.train.251.ent5_1"
]
}
] |
[
{
"id": "1.0alpha7.train.251.rel0s1.0alpha7.train.251.ent0_0.o1.0alpha7.train.251.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.251.ent0_0",
"arg2_id": "1.0alpha7.train.251.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.251.rel0s1.0alpha7.train.251.ent0_0.o1.0alpha7.train.251.ent2_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.251.ent0_0",
"arg2_id": "1.0alpha7.train.251.ent2_1",
"normalized": []
},
{
"id": "1.0alpha7.train.251.rel1s1.0alpha7.train.251.ent1_0.o1.0alpha7.train.251.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.251.ent1_0",
"arg2_id": "1.0alpha7.train.251.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.251.rel1s1.0alpha7.train.251.ent1_0.o1.0alpha7.train.251.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.251.ent1_0",
"arg2_id": "1.0alpha7.train.251.ent5_1",
"normalized": []
},
{
"id": "1.0alpha7.train.251.rel1s1.0alpha7.train.251.ent2_1.o1.0alpha7.train.251.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.251.ent2_1",
"arg2_id": "1.0alpha7.train.251.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.251.rel1s1.0alpha7.train.251.ent2_1.o1.0alpha7.train.251.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.251.ent2_1",
"arg2_id": "1.0alpha7.train.251.ent5_1",
"normalized": []
}
] |
1.0alpha7.train.252
|
5301491
|
[
{
"id": "1.0alpha7.train.252.sent",
"type": "sentence",
"text": [
"The presence of similar motifs to those found in all known GTPases suggests that menin could similarly exhibit GTP binding activity as well as GTP-hydrolyzing activity."
],
"offsets": [
[
0,
168
]
]
}
] |
[
{
"id": "1.0alpha7.train.252.ent0_0",
"type": "protein",
"text": [
"menin"
],
"offsets": [
[
81,
86
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4221"
},
{
"db_name": "hgnc",
"db_id": "MEN1"
},
{
"db_name": "uniprot",
"db_id": "O00255"
}
]
},
{
"id": "1.0alpha7.train.252.ent1_0",
"type": "chemical",
"text": [
"GTP"
],
"offsets": [
[
111,
114
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "135398633"
}
]
},
{
"id": "1.0alpha7.train.252.ent2_1",
"type": "chemical",
"text": [
"GTP"
],
"offsets": [
[
143,
146
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "135398633"
}
]
},
{
"id": "1.0alpha7.train.252.ent3_0",
"type": "protein-family",
"text": [
"GTPases"
],
"offsets": [
[
59,
66
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.252.coref0",
"entity_ids": [
"1.0alpha7.train.252.ent0_0"
]
},
{
"id": "1.0alpha7.train.252.coref1",
"entity_ids": [
"1.0alpha7.train.252.ent1_0",
"1.0alpha7.train.252.ent2_1"
]
},
{
"id": "1.0alpha7.train.252.coref2",
"entity_ids": [
"1.0alpha7.train.252.ent3_0"
]
}
] |
[
{
"id": "1.0alpha7.train.252.rel0s1.0alpha7.train.252.ent0_0.o1.0alpha7.train.252.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.252.ent0_0",
"arg2_id": "1.0alpha7.train.252.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.252.rel0s1.0alpha7.train.252.ent0_0.o1.0alpha7.train.252.ent2_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.252.ent0_0",
"arg2_id": "1.0alpha7.train.252.ent2_1",
"normalized": []
},
{
"id": "1.0alpha7.train.252.rel1s1.0alpha7.train.252.ent1_0.o1.0alpha7.train.252.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.252.ent1_0",
"arg2_id": "1.0alpha7.train.252.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.252.rel1s1.0alpha7.train.252.ent2_1.o1.0alpha7.train.252.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.252.ent2_1",
"arg2_id": "1.0alpha7.train.252.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.253
|
5301491
|
[
{
"id": "1.0alpha7.train.253.sent",
"type": "sentence",
"text": [
"Menin Binds GTP"
],
"offsets": [
[
0,
15
]
]
}
] |
[
{
"id": "1.0alpha7.train.253.ent0_0",
"type": "protein",
"text": [
"Menin"
],
"offsets": [
[
0,
5
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4221"
},
{
"db_name": "hgnc",
"db_id": "MEN1"
},
{
"db_name": "uniprot",
"db_id": "O00255"
}
]
},
{
"id": "1.0alpha7.train.253.ent1_0",
"type": "chemical",
"text": [
"GTP"
],
"offsets": [
[
12,
15
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "135398633"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.253.coref0",
"entity_ids": [
"1.0alpha7.train.253.ent0_0"
]
},
{
"id": "1.0alpha7.train.253.coref1",
"entity_ids": [
"1.0alpha7.train.253.ent1_0"
]
}
] |
[
{
"id": "1.0alpha7.train.253.rel0s1.0alpha7.train.253.ent0_0.o1.0alpha7.train.253.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.253.ent0_0",
"arg2_id": "1.0alpha7.train.253.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.254
|
3099102
|
[
{
"id": "1.0alpha7.train.254.sent",
"type": "sentence",
"text": [
"The finding that SLB can bind to Lhx3 and Lhx4 suggests a possible role in modulating transcription."
],
"offsets": [
[
0,
100
]
]
}
] |
[
{
"id": "1.0alpha7.train.254.ent0_0",
"type": "protein",
"text": [
"Lhx3"
],
"offsets": [
[
33,
37
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "8022"
},
{
"db_name": "hgnc",
"db_id": "LHX3"
},
{
"db_name": "uniprot",
"db_id": "Q9UBR4"
}
]
},
{
"id": "1.0alpha7.train.254.ent1_0",
"type": "protein",
"text": [
"Lhx4"
],
"offsets": [
[
42,
46
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "89884"
},
{
"db_name": "hgnc",
"db_id": "LHX4"
},
{
"db_name": "uniprot",
"db_id": "Q969G2"
}
]
},
{
"id": "1.0alpha7.train.254.ent2_0",
"type": "protein",
"text": [
"SLB"
],
"offsets": [
[
17,
20
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "26160"
},
{
"db_name": "hgnc",
"db_id": "IFT172"
},
{
"db_name": "uniprot",
"db_id": "Q9UG01"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.254.coref0",
"entity_ids": [
"1.0alpha7.train.254.ent0_0"
]
},
{
"id": "1.0alpha7.train.254.coref1",
"entity_ids": [
"1.0alpha7.train.254.ent1_0"
]
},
{
"id": "1.0alpha7.train.254.coref2",
"entity_ids": [
"1.0alpha7.train.254.ent2_0"
]
}
] |
[
{
"id": "1.0alpha7.train.254.rel0s1.0alpha7.train.254.ent0_0.o1.0alpha7.train.254.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.254.ent0_0",
"arg2_id": "1.0alpha7.train.254.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.254.rel1s1.0alpha7.train.254.ent1_0.o1.0alpha7.train.254.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.254.ent1_0",
"arg2_id": "1.0alpha7.train.254.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.255
|
5161992
|
[
{
"id": "1.0alpha7.train.255.sent",
"type": "sentence",
"text": [
"We show that Hsp70 binding is regulated by the phosphorylation state of the turn motif, one of the two conserved carboxyl-terminal phosphorylation sites, and that Hsp70 binds mature PKC that has become dephosphorylated, rather than newly synthesized PKC that has yet to be phosphorylated."
],
"offsets": [
[
0,
288
]
]
}
] |
[
{
"id": "1.0alpha7.train.255.ent0_0",
"type": "protein",
"text": [
"Hsp70"
],
"offsets": [
[
13,
18
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3308"
},
{
"db_name": "hgnc",
"db_id": "HSPA4"
},
{
"db_name": "uniprot",
"db_id": "P34932"
}
]
},
{
"id": "1.0alpha7.train.255.ent1_1",
"type": "protein",
"text": [
"Hsp70"
],
"offsets": [
[
163,
168
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3308"
},
{
"db_name": "hgnc",
"db_id": "HSPA4"
},
{
"db_name": "uniprot",
"db_id": "P34932"
}
]
},
{
"id": "1.0alpha7.train.255.ent2_0",
"type": "protein-family",
"text": [
"PKC"
],
"offsets": [
[
182,
185
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR014376"
}
]
},
{
"id": "1.0alpha7.train.255.ent3_1",
"type": "protein-family",
"text": [
"PKC"
],
"offsets": [
[
250,
253
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR014376"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.255.coref0",
"entity_ids": [
"1.0alpha7.train.255.ent0_0",
"1.0alpha7.train.255.ent1_1"
]
},
{
"id": "1.0alpha7.train.255.coref1",
"entity_ids": [
"1.0alpha7.train.255.ent2_0",
"1.0alpha7.train.255.ent3_1"
]
}
] |
[
{
"id": "1.0alpha7.train.255.rel0s1.0alpha7.train.255.ent0_0.o1.0alpha7.train.255.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.255.ent0_0",
"arg2_id": "1.0alpha7.train.255.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.255.rel0s1.0alpha7.train.255.ent0_0.o1.0alpha7.train.255.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.255.ent0_0",
"arg2_id": "1.0alpha7.train.255.ent3_1",
"normalized": []
},
{
"id": "1.0alpha7.train.255.rel0s1.0alpha7.train.255.ent1_1.o1.0alpha7.train.255.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.255.ent1_1",
"arg2_id": "1.0alpha7.train.255.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.255.rel0s1.0alpha7.train.255.ent1_1.o1.0alpha7.train.255.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.255.ent1_1",
"arg2_id": "1.0alpha7.train.255.ent3_1",
"normalized": []
}
] |
1.0alpha7.train.256
|
3367575
|
[
{
"id": "1.0alpha7.train.256.sent",
"type": "sentence",
"text": [
"However, affinity chromatography experiments showed that Tm bound to acidic TnT with a greater affinity than to basic TnT, consistent with the significantly higher maximal binding of acidic TnT to Tm in solid phase binding assays."
],
"offsets": [
[
0,
230
]
]
}
] |
[
{
"id": "1.0alpha7.train.256.ent0_0",
"type": "protein",
"text": [
"TnT"
],
"offsets": [
[
76,
79
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.256.ent1_1",
"type": "protein",
"text": [
"TnT"
],
"offsets": [
[
118,
121
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.256.ent2_2",
"type": "protein",
"text": [
"TnT"
],
"offsets": [
[
190,
193
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.256.ent3_0",
"type": "protein",
"text": [
"basic TnT"
],
"offsets": [
[
112,
121
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.256.ent4_0",
"type": "protein",
"text": [
"Tm"
],
"offsets": [
[
57,
59
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.256.ent5_1",
"type": "protein",
"text": [
"Tm"
],
"offsets": [
[
197,
199
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.256.ent6_0",
"type": "protein",
"text": [
"acidic TnT"
],
"offsets": [
[
69,
79
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.256.ent7_1",
"type": "protein",
"text": [
"acidic TnT"
],
"offsets": [
[
183,
193
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.256.coref0",
"entity_ids": [
"1.0alpha7.train.256.ent0_0",
"1.0alpha7.train.256.ent1_1",
"1.0alpha7.train.256.ent2_2"
]
},
{
"id": "1.0alpha7.train.256.coref1",
"entity_ids": [
"1.0alpha7.train.256.ent3_0"
]
},
{
"id": "1.0alpha7.train.256.coref2",
"entity_ids": [
"1.0alpha7.train.256.ent4_0",
"1.0alpha7.train.256.ent5_1"
]
},
{
"id": "1.0alpha7.train.256.coref3",
"entity_ids": [
"1.0alpha7.train.256.ent6_0",
"1.0alpha7.train.256.ent7_1"
]
}
] |
[
{
"id": "1.0alpha7.train.256.rel0s1.0alpha7.train.256.ent0_0.o1.0alpha7.train.256.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.256.ent0_0",
"arg2_id": "1.0alpha7.train.256.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.256.rel0s1.0alpha7.train.256.ent0_0.o1.0alpha7.train.256.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.256.ent0_0",
"arg2_id": "1.0alpha7.train.256.ent5_1",
"normalized": []
},
{
"id": "1.0alpha7.train.256.rel0s1.0alpha7.train.256.ent1_1.o1.0alpha7.train.256.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.256.ent1_1",
"arg2_id": "1.0alpha7.train.256.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.256.rel0s1.0alpha7.train.256.ent1_1.o1.0alpha7.train.256.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.256.ent1_1",
"arg2_id": "1.0alpha7.train.256.ent5_1",
"normalized": []
},
{
"id": "1.0alpha7.train.256.rel0s1.0alpha7.train.256.ent2_2.o1.0alpha7.train.256.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.256.ent2_2",
"arg2_id": "1.0alpha7.train.256.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.256.rel0s1.0alpha7.train.256.ent2_2.o1.0alpha7.train.256.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.256.ent2_2",
"arg2_id": "1.0alpha7.train.256.ent5_1",
"normalized": []
}
] |
1.0alpha7.train.257
|
25166232
|
[
{
"id": "1.0alpha7.train.257.sent",
"type": "sentence",
"text": [
"Ca2+-Dependent Binding of Syntaxin 1a to the C2A Domain Demonstrated by 1H-15N HSQC Spectroscopy"
],
"offsets": [
[
0,
96
]
]
}
] |
[
{
"id": "1.0alpha7.train.257.ent0_0",
"type": "assay",
"text": [
"1H-15N HSQC Spectroscopy"
],
"offsets": [
[
72,
96
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.257.ent1_0",
"type": "chemical",
"text": [
"Ca2+"
],
"offsets": [
[
0,
4
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "5460341"
}
]
},
{
"id": "1.0alpha7.train.257.ent2_0",
"type": "protein-domain",
"text": [
"C2A"
],
"offsets": [
[
45,
48
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.257.ent3_0",
"type": "protein",
"text": [
"Syntaxin 1a"
],
"offsets": [
[
26,
37
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6804"
},
{
"db_name": "hgnc",
"db_id": "STX1A"
},
{
"db_name": "uniprot",
"db_id": "Q16623"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.257.coref0",
"entity_ids": [
"1.0alpha7.train.257.ent0_0"
]
},
{
"id": "1.0alpha7.train.257.coref1",
"entity_ids": [
"1.0alpha7.train.257.ent1_0"
]
},
{
"id": "1.0alpha7.train.257.coref2",
"entity_ids": [
"1.0alpha7.train.257.ent2_0"
]
},
{
"id": "1.0alpha7.train.257.coref3",
"entity_ids": [
"1.0alpha7.train.257.ent3_0"
]
}
] |
[
{
"id": "1.0alpha7.train.257.rel0s1.0alpha7.train.257.ent1_0.o1.0alpha7.train.257.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.257.ent1_0",
"arg2_id": "1.0alpha7.train.257.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.258
|
563208
|
[
{
"id": "1.0alpha7.train.258.sent",
"type": "sentence",
"text": [
"Adducin is a membrane skeleton protein originally described in human erythrocytes that promotes the binding of spectrin to actin and also binds directly to actin and bundles actin filaments."
],
"offsets": [
[
0,
190
]
]
}
] |
[
{
"id": "1.0alpha7.train.258.ent0_0",
"type": "protein-complex",
"text": [
"spectrin"
],
"offsets": [
[
111,
119
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR002017"
}
]
},
{
"id": "1.0alpha7.train.258.ent1_0",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
123,
128
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
},
{
"id": "1.0alpha7.train.258.ent2_1",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
156,
161
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
},
{
"id": "1.0alpha7.train.258.ent3_2",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
174,
179
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
},
{
"id": "1.0alpha7.train.258.ent4_0",
"type": "protein",
"text": [
"Adducin"
],
"offsets": [
[
0,
7
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.258.coref0",
"entity_ids": [
"1.0alpha7.train.258.ent0_0"
]
},
{
"id": "1.0alpha7.train.258.coref1",
"entity_ids": [
"1.0alpha7.train.258.ent1_0",
"1.0alpha7.train.258.ent2_1",
"1.0alpha7.train.258.ent3_2"
]
},
{
"id": "1.0alpha7.train.258.coref2",
"entity_ids": [
"1.0alpha7.train.258.ent4_0"
]
}
] |
[
{
"id": "1.0alpha7.train.258.rel0s1.0alpha7.train.258.ent1_0.o1.0alpha7.train.258.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.258.ent1_0",
"arg2_id": "1.0alpha7.train.258.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.258.rel0s1.0alpha7.train.258.ent2_1.o1.0alpha7.train.258.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.258.ent2_1",
"arg2_id": "1.0alpha7.train.258.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.258.rel0s1.0alpha7.train.258.ent3_2.o1.0alpha7.train.258.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.258.ent3_2",
"arg2_id": "1.0alpha7.train.258.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.258.rel1s1.0alpha7.train.258.ent0_0.o1.0alpha7.train.258.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.258.ent0_0",
"arg2_id": "1.0alpha7.train.258.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.258.rel1s1.0alpha7.train.258.ent0_0.o1.0alpha7.train.258.ent2_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.258.ent0_0",
"arg2_id": "1.0alpha7.train.258.ent2_1",
"normalized": []
},
{
"id": "1.0alpha7.train.258.rel1s1.0alpha7.train.258.ent0_0.o1.0alpha7.train.258.ent3_2",
"type": "bind",
"arg1_id": "1.0alpha7.train.258.ent0_0",
"arg2_id": "1.0alpha7.train.258.ent3_2",
"normalized": []
}
] |
1.0alpha7.train.259
|
6233645
|
[
{
"id": "1.0alpha7.train.259.sent",
"type": "sentence",
"text": [
"In conjunction with peptide-binding and genetic studies, atomic modeling of fimbrin binding to F-actin strongly suggests that the F-actin-binding residues in the CH domain are concentrated in its C-terminal portion ( 23)."
],
"offsets": [
[
0,
221
]
]
}
] |
[
{
"id": "1.0alpha7.train.259.ent0_0",
"type": "protein",
"text": [
"fimbrin"
],
"offsets": [
[
76,
83
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5357"
},
{
"db_name": "hgnc",
"db_id": "PLS1"
},
{
"db_name": "uniprot",
"db_id": "Q14651"
}
]
},
{
"id": "1.0alpha7.train.259.ent1_0",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
97,
102
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR004000"
}
]
},
{
"id": "1.0alpha7.train.259.ent2_1",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
132,
137
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR004000"
}
]
},
{
"id": "1.0alpha7.train.259.ent3_0",
"type": "protein-domain",
"text": [
"CH domain"
],
"offsets": [
[
162,
171
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.259.ent4_0",
"type": "protein",
"text": [
"F-actin"
],
"offsets": [
[
95,
102
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.259.ent5_1",
"type": "protein",
"text": [
"F-actin"
],
"offsets": [
[
130,
137
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.259.coref0",
"entity_ids": [
"1.0alpha7.train.259.ent0_0"
]
},
{
"id": "1.0alpha7.train.259.coref1",
"entity_ids": [
"1.0alpha7.train.259.ent1_0",
"1.0alpha7.train.259.ent2_1"
]
},
{
"id": "1.0alpha7.train.259.coref2",
"entity_ids": [
"1.0alpha7.train.259.ent3_0"
]
},
{
"id": "1.0alpha7.train.259.coref3",
"entity_ids": [
"1.0alpha7.train.259.ent4_0",
"1.0alpha7.train.259.ent5_1"
]
}
] |
[
{
"id": "1.0alpha7.train.259.rel0s1.0alpha7.train.259.ent0_0.o1.0alpha7.train.259.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.259.ent0_0",
"arg2_id": "1.0alpha7.train.259.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.259.rel0s1.0alpha7.train.259.ent0_0.o1.0alpha7.train.259.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.259.ent0_0",
"arg2_id": "1.0alpha7.train.259.ent5_1",
"normalized": []
}
] |
1.0alpha7.train.260
|
5676496
|
[
{
"id": "1.0alpha7.train.260.sent",
"type": "sentence",
"text": [
"Comparison of the Ral-binding surface of Sec5 with the region of GDI that interacts with Rho family G proteins shows that the contacts between Sec5-Ral and GDI-Cdc42 are significantly different."
],
"offsets": [
[
0,
194
]
]
}
] |
[
{
"id": "1.0alpha7.train.260.ent0_0",
"type": "protein",
"text": [
"GDI"
],
"offsets": [
[
65,
68
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.260.ent1_1",
"type": "protein",
"text": [
"GDI"
],
"offsets": [
[
156,
159
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.260.ent2_0",
"type": "protein",
"text": [
"Ral"
],
"offsets": [
[
18,
21
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5898"
},
{
"db_name": "hgnc",
"db_id": "RALA"
},
{
"db_name": "uniprot",
"db_id": "P11233"
}
]
},
{
"id": "1.0alpha7.train.260.ent3_1",
"type": "protein",
"text": [
"Ral"
],
"offsets": [
[
148,
151
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5898"
},
{
"db_name": "hgnc",
"db_id": "RALA"
},
{
"db_name": "uniprot",
"db_id": "P11233"
}
]
},
{
"id": "1.0alpha7.train.260.ent4_0",
"type": "protein",
"text": [
"Sec5"
],
"offsets": [
[
41,
45
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "55770"
},
{
"db_name": "hgnc",
"db_id": "EXOC2"
},
{
"db_name": "uniprot",
"db_id": "Q96KP1"
}
]
},
{
"id": "1.0alpha7.train.260.ent5_1",
"type": "protein",
"text": [
"Sec5"
],
"offsets": [
[
143,
147
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "55770"
},
{
"db_name": "hgnc",
"db_id": "EXOC2"
},
{
"db_name": "uniprot",
"db_id": "Q96KP1"
}
]
},
{
"id": "1.0alpha7.train.260.ent6_0",
"type": "protein-family",
"text": [
"Rho family G proteins"
],
"offsets": [
[
89,
110
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.260.ent7_0",
"type": "protein",
"text": [
"Cdc42"
],
"offsets": [
[
160,
165
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "998"
},
{
"db_name": "hgnc",
"db_id": "CDC42"
},
{
"db_name": "uniprot",
"db_id": "P60953"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.260.coref0",
"entity_ids": [
"1.0alpha7.train.260.ent0_0",
"1.0alpha7.train.260.ent1_1"
]
},
{
"id": "1.0alpha7.train.260.coref1",
"entity_ids": [
"1.0alpha7.train.260.ent2_0",
"1.0alpha7.train.260.ent3_1"
]
},
{
"id": "1.0alpha7.train.260.coref2",
"entity_ids": [
"1.0alpha7.train.260.ent4_0",
"1.0alpha7.train.260.ent5_1"
]
},
{
"id": "1.0alpha7.train.260.coref3",
"entity_ids": [
"1.0alpha7.train.260.ent6_0"
]
},
{
"id": "1.0alpha7.train.260.coref4",
"entity_ids": [
"1.0alpha7.train.260.ent7_0"
]
}
] |
[
{
"id": "1.0alpha7.train.260.rel0s1.0alpha7.train.260.ent2_0.o1.0alpha7.train.260.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.260.ent2_0",
"arg2_id": "1.0alpha7.train.260.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.260.rel0s1.0alpha7.train.260.ent2_0.o1.0alpha7.train.260.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.260.ent2_0",
"arg2_id": "1.0alpha7.train.260.ent5_1",
"normalized": []
},
{
"id": "1.0alpha7.train.260.rel0s1.0alpha7.train.260.ent3_1.o1.0alpha7.train.260.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.260.ent3_1",
"arg2_id": "1.0alpha7.train.260.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.260.rel0s1.0alpha7.train.260.ent3_1.o1.0alpha7.train.260.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.260.ent3_1",
"arg2_id": "1.0alpha7.train.260.ent5_1",
"normalized": []
},
{
"id": "1.0alpha7.train.260.rel1s1.0alpha7.train.260.ent0_0.o1.0alpha7.train.260.ent7_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.260.ent0_0",
"arg2_id": "1.0alpha7.train.260.ent7_0",
"normalized": []
},
{
"id": "1.0alpha7.train.260.rel1s1.0alpha7.train.260.ent1_1.o1.0alpha7.train.260.ent7_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.260.ent1_1",
"arg2_id": "1.0alpha7.train.260.ent7_0",
"normalized": []
},
{
"id": "1.0alpha7.train.260.rel2s1.0alpha7.train.260.ent0_0.o1.0alpha7.train.260.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.260.ent0_0",
"arg2_id": "1.0alpha7.train.260.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.260.rel2s1.0alpha7.train.260.ent1_1.o1.0alpha7.train.260.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.260.ent1_1",
"arg2_id": "1.0alpha7.train.260.ent6_0",
"normalized": []
}
] |
1.0alpha7.train.261
|
3506818
|
[
{
"id": "1.0alpha7.train.261.sent",
"type": "sentence",
"text": [
"The binding sites for Armadillo and Groucho on Tcf do not overlap, but whether or not Armadillo and Groucho bind simultaneously to Tcf is not clear."
],
"offsets": [
[
0,
148
]
]
}
] |
[
{
"id": "1.0alpha7.train.261.ent0_0",
"type": "protein-family",
"text": [
"Tcf"
],
"offsets": [
[
47,
50
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR024940"
}
]
},
{
"id": "1.0alpha7.train.261.ent1_1",
"type": "protein-family",
"text": [
"Tcf"
],
"offsets": [
[
131,
134
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR024940"
}
]
},
{
"id": "1.0alpha7.train.261.ent2_0",
"type": "protein",
"text": [
"Groucho"
],
"offsets": [
[
36,
43
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P16371"
}
]
},
{
"id": "1.0alpha7.train.261.ent3_1",
"type": "protein",
"text": [
"Groucho"
],
"offsets": [
[
100,
107
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P16371"
}
]
},
{
"id": "1.0alpha7.train.261.ent4_0",
"type": "protein-motif",
"text": [
"Armadillo"
],
"offsets": [
[
22,
31
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR000225"
}
]
},
{
"id": "1.0alpha7.train.261.ent5_1",
"type": "protein-motif",
"text": [
"Armadillo"
],
"offsets": [
[
86,
95
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR000225"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.261.coref0",
"entity_ids": [
"1.0alpha7.train.261.ent0_0",
"1.0alpha7.train.261.ent1_1"
]
},
{
"id": "1.0alpha7.train.261.coref1",
"entity_ids": [
"1.0alpha7.train.261.ent2_0",
"1.0alpha7.train.261.ent3_1"
]
},
{
"id": "1.0alpha7.train.261.coref2",
"entity_ids": [
"1.0alpha7.train.261.ent4_0",
"1.0alpha7.train.261.ent5_1"
]
}
] |
[
{
"id": "1.0alpha7.train.261.rel0s1.0alpha7.train.261.ent0_0.o1.0alpha7.train.261.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.261.ent0_0",
"arg2_id": "1.0alpha7.train.261.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.261.rel0s1.0alpha7.train.261.ent0_0.o1.0alpha7.train.261.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.261.ent0_0",
"arg2_id": "1.0alpha7.train.261.ent5_1",
"normalized": []
},
{
"id": "1.0alpha7.train.261.rel0s1.0alpha7.train.261.ent1_1.o1.0alpha7.train.261.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.261.ent1_1",
"arg2_id": "1.0alpha7.train.261.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.261.rel0s1.0alpha7.train.261.ent1_1.o1.0alpha7.train.261.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.261.ent1_1",
"arg2_id": "1.0alpha7.train.261.ent5_1",
"normalized": []
},
{
"id": "1.0alpha7.train.261.rel1s1.0alpha7.train.261.ent0_0.o1.0alpha7.train.261.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.261.ent0_0",
"arg2_id": "1.0alpha7.train.261.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.261.rel1s1.0alpha7.train.261.ent0_0.o1.0alpha7.train.261.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.261.ent0_0",
"arg2_id": "1.0alpha7.train.261.ent3_1",
"normalized": []
},
{
"id": "1.0alpha7.train.261.rel1s1.0alpha7.train.261.ent1_1.o1.0alpha7.train.261.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.261.ent1_1",
"arg2_id": "1.0alpha7.train.261.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.261.rel1s1.0alpha7.train.261.ent1_1.o1.0alpha7.train.261.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.261.ent1_1",
"arg2_id": "1.0alpha7.train.261.ent3_1",
"normalized": []
}
] |
1.0alpha7.train.262
|
4281828
|
[
{
"id": "1.0alpha7.train.262.sent",
"type": "sentence",
"text": [
"Specific binding of Sp1 and Smad3 was inhibited with an excess of 100x unlabeled oligonucleotide ( Competitor)."
],
"offsets": [
[
0,
111
]
]
}
] |
[
{
"id": "1.0alpha7.train.262.ent0_0",
"type": "protein",
"text": [
"Sp1"
],
"offsets": [
[
20,
23
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6667"
},
{
"db_name": "hgnc",
"db_id": "SP1"
},
{
"db_name": "uniprot",
"db_id": "P08047"
}
]
},
{
"id": "1.0alpha7.train.262.ent1_0",
"type": "protein",
"text": [
"Smad3"
],
"offsets": [
[
28,
33
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4088"
},
{
"db_name": "hgnc",
"db_id": "SMAD3"
},
{
"db_name": "uniprot",
"db_id": "P84022"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.262.coref0",
"entity_ids": [
"1.0alpha7.train.262.ent0_0"
]
},
{
"id": "1.0alpha7.train.262.coref1",
"entity_ids": [
"1.0alpha7.train.262.ent1_0"
]
}
] |
[
{
"id": "1.0alpha7.train.262.rel0s1.0alpha7.train.262.ent0_0.o1.0alpha7.train.262.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.262.ent0_0",
"arg2_id": "1.0alpha7.train.262.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.263
|
3533947
|
[
{
"id": "1.0alpha7.train.263.sent",
"type": "sentence",
"text": [
"This indicates that the binding of GSK-3beta to Axin is essential for its activity to degrade beta-catenin, consistent with the observation that AxindeltaGSK-3beta does not enhance the phosphorylation of beta-catenin even in the presence of APC-(1211-2075)."
],
"offsets": [
[
0,
257
]
]
}
] |
[
{
"id": "1.0alpha7.train.263.ent0_0",
"type": "protein",
"text": [
"Axin"
],
"offsets": [
[
48,
52
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "8312"
},
{
"db_name": "hgnc",
"db_id": "AXIN1"
},
{
"db_name": "uniprot",
"db_id": "O15169"
}
]
},
{
"id": "1.0alpha7.train.263.ent1_0",
"type": "protein-complex",
"text": [
"AxindeltaGSK-3beta"
],
"offsets": [
[
145,
163
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.263.ent2_0",
"type": "protein",
"text": [
"APC"
],
"offsets": [
[
241,
244
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "324"
},
{
"db_name": "hgnc",
"db_id": "APC"
}
]
},
{
"id": "1.0alpha7.train.263.ent3_0",
"type": "protein",
"text": [
"APC-(1211-2075)"
],
"offsets": [
[
241,
256
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.263.ent4_0",
"type": "protein",
"text": [
"beta-catenin"
],
"offsets": [
[
94,
106
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1499"
},
{
"db_name": "hgnc",
"db_id": "CTNNB1"
},
{
"db_name": "uniprot",
"db_id": "P35222"
}
]
},
{
"id": "1.0alpha7.train.263.ent5_1",
"type": "protein",
"text": [
"beta-catenin"
],
"offsets": [
[
204,
216
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1499"
},
{
"db_name": "hgnc",
"db_id": "CTNNB1"
},
{
"db_name": "uniprot",
"db_id": "P35222"
}
]
},
{
"id": "1.0alpha7.train.263.ent6_0",
"type": "protein",
"text": [
"GSK-3beta"
],
"offsets": [
[
35,
44
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2932"
},
{
"db_name": "hgnc",
"db_id": "GSK3B"
},
{
"db_name": "uniprot",
"db_id": "P49841"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.263.coref0",
"entity_ids": [
"1.0alpha7.train.263.ent0_0"
]
},
{
"id": "1.0alpha7.train.263.coref1",
"entity_ids": [
"1.0alpha7.train.263.ent1_0"
]
},
{
"id": "1.0alpha7.train.263.coref2",
"entity_ids": [
"1.0alpha7.train.263.ent2_0"
]
},
{
"id": "1.0alpha7.train.263.coref3",
"entity_ids": [
"1.0alpha7.train.263.ent3_0"
]
},
{
"id": "1.0alpha7.train.263.coref4",
"entity_ids": [
"1.0alpha7.train.263.ent4_0",
"1.0alpha7.train.263.ent5_1"
]
},
{
"id": "1.0alpha7.train.263.coref5",
"entity_ids": [
"1.0alpha7.train.263.ent6_0"
]
}
] |
[
{
"id": "1.0alpha7.train.263.rel0s1.0alpha7.train.263.ent0_0.o1.0alpha7.train.263.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.263.ent0_0",
"arg2_id": "1.0alpha7.train.263.ent6_0",
"normalized": []
}
] |
1.0alpha7.train.264
|
25751449
|
[
{
"id": "1.0alpha7.train.264.sent",
"type": "sentence",
"text": [
"N.N. Dewji and S.J. Singer, Specific transcellular binding between membrane proteins crucial to Alzheimer disease."
],
"offsets": [
[
0,
114
]
]
}
] |
[] |
[] |
[] |
[] |
1.0alpha7.train.265
|
16335607
|
[
{
"id": "1.0alpha7.train.265.sent",
"type": "sentence",
"text": [
"We tested seven mAbs derived from an HIV-2-infected human for their ability to inhibit SIVmac239 gp120 binding to CCR5rh in HEK293 cells in the presence and absence of sCD4."
],
"offsets": [
[
0,
173
]
]
}
] |
[
{
"id": "1.0alpha7.train.265.ent0_0",
"type": "reagent",
"text": [
"mAbs"
],
"offsets": [
[
16,
20
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.265.ent1_0",
"type": "protein",
"text": [
"CCR5rh"
],
"offsets": [
[
114,
120
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.265.ent2_0",
"type": "protein",
"text": [
"sCD4"
],
"offsets": [
[
168,
172
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.265.ent3_0",
"type": "protein",
"text": [
"gp120"
],
"offsets": [
[
97,
102
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P04578"
}
]
},
{
"id": "1.0alpha7.train.265.ent4_0",
"type": "cell",
"text": [
"SIVmac239"
],
"offsets": [
[
87,
96
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.265.ent5_0",
"type": "cell",
"text": [
"HEK293"
],
"offsets": [
[
124,
130
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.265.coref0",
"entity_ids": [
"1.0alpha7.train.265.ent0_0"
]
},
{
"id": "1.0alpha7.train.265.coref1",
"entity_ids": [
"1.0alpha7.train.265.ent1_0"
]
},
{
"id": "1.0alpha7.train.265.coref2",
"entity_ids": [
"1.0alpha7.train.265.ent2_0"
]
},
{
"id": "1.0alpha7.train.265.coref3",
"entity_ids": [
"1.0alpha7.train.265.ent3_0"
]
},
{
"id": "1.0alpha7.train.265.coref4",
"entity_ids": [
"1.0alpha7.train.265.ent4_0"
]
},
{
"id": "1.0alpha7.train.265.coref5",
"entity_ids": [
"1.0alpha7.train.265.ent5_0"
]
}
] |
[
{
"id": "1.0alpha7.train.265.rel0s1.0alpha7.train.265.ent1_0.o1.0alpha7.train.265.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.265.ent1_0",
"arg2_id": "1.0alpha7.train.265.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.266
|
3181409
|
[
{
"id": "1.0alpha7.train.266.sent",
"type": "sentence",
"text": [
"After extensive washing, the amount of MyD118/Gadd45 protein bound to PCNA was assessed using either MyD118- or Gadd45-specific antibodies, which, in turn, were reacted with HRP-coupled secondary antibody."
],
"offsets": [
[
0,
205
]
]
}
] |
[
{
"id": "1.0alpha7.train.266.ent0_0",
"type": "protein",
"text": [
"PCNA"
],
"offsets": [
[
70,
74
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5111"
},
{
"db_name": "hgnc",
"db_id": "PCNA"
},
{
"db_name": "uniprot",
"db_id": "P12004"
}
]
},
{
"id": "1.0alpha7.train.266.ent1_0",
"type": "protein-family",
"text": [
"Gadd45"
],
"offsets": [
[
46,
52
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR024824"
}
]
},
{
"id": "1.0alpha7.train.266.ent2_1",
"type": "protein-family",
"text": [
"Gadd45"
],
"offsets": [
[
112,
118
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR024824"
}
]
},
{
"id": "1.0alpha7.train.266.ent3_0",
"type": "protein",
"text": [
"HRP"
],
"offsets": [
[
174,
177
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.266.ent4_0",
"type": "protein-family",
"text": [
"MyD118"
],
"offsets": [
[
39,
45
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR024824"
}
]
},
{
"id": "1.0alpha7.train.266.ent5_1",
"type": "protein-family",
"text": [
"MyD118"
],
"offsets": [
[
101,
107
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR024824"
}
]
},
{
"id": "1.0alpha7.train.266.ent6_0",
"type": "reagent",
"text": [
"MyD118-"
],
"offsets": [
[
101,
108
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.266.ent7_0",
"type": "reagent",
"text": [
"Gadd45-specific antibodies"
],
"offsets": [
[
112,
138
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.266.ent8_0",
"type": "reagent",
"text": [
"HRP-coupled secondary antibody"
],
"offsets": [
[
174,
204
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.266.coref0",
"entity_ids": [
"1.0alpha7.train.266.ent0_0"
]
},
{
"id": "1.0alpha7.train.266.coref1",
"entity_ids": [
"1.0alpha7.train.266.ent1_0",
"1.0alpha7.train.266.ent2_1"
]
},
{
"id": "1.0alpha7.train.266.coref2",
"entity_ids": [
"1.0alpha7.train.266.ent3_0"
]
},
{
"id": "1.0alpha7.train.266.coref3",
"entity_ids": [
"1.0alpha7.train.266.ent4_0",
"1.0alpha7.train.266.ent5_1"
]
},
{
"id": "1.0alpha7.train.266.coref4",
"entity_ids": [
"1.0alpha7.train.266.ent6_0"
]
},
{
"id": "1.0alpha7.train.266.coref5",
"entity_ids": [
"1.0alpha7.train.266.ent7_0"
]
},
{
"id": "1.0alpha7.train.266.coref6",
"entity_ids": [
"1.0alpha7.train.266.ent8_0"
]
}
] |
[
{
"id": "1.0alpha7.train.266.rel0s1.0alpha7.train.266.ent0_0.o1.0alpha7.train.266.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.266.ent0_0",
"arg2_id": "1.0alpha7.train.266.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.266.rel0s1.0alpha7.train.266.ent0_0.o1.0alpha7.train.266.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.266.ent0_0",
"arg2_id": "1.0alpha7.train.266.ent5_1",
"normalized": []
},
{
"id": "1.0alpha7.train.266.rel1s1.0alpha7.train.266.ent0_0.o1.0alpha7.train.266.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.266.ent0_0",
"arg2_id": "1.0alpha7.train.266.ent1_0",
"normalized": []
},
{
"id": "1.0alpha7.train.266.rel1s1.0alpha7.train.266.ent0_0.o1.0alpha7.train.266.ent2_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.266.ent0_0",
"arg2_id": "1.0alpha7.train.266.ent2_1",
"normalized": []
}
] |
1.0alpha7.train.267
|
15268425
|
[
{
"id": "1.0alpha7.train.267.sent",
"type": "sentence",
"text": [
"Given the observation that CRT binds to SL structures with GC-rich stems (7, 16, 24, 27), we searched for the secondary structures with GC-rich stems within the C/EBPα mRNA and found two possible SL organizations containing GC-rich regions within the stem (Fig. 7B)."
],
"offsets": [
[
0,
267
]
]
}
] |
[
{
"id": "1.0alpha7.train.267.ent0_0",
"type": "DNA",
"text": [
"SL structures"
],
"offsets": [
[
40,
53
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.267.ent1_0",
"type": "DNA",
"text": [
"GC-rich stems"
],
"offsets": [
[
59,
72
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.267.ent2_1",
"type": "DNA",
"text": [
"GC-rich stems"
],
"offsets": [
[
136,
149
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.267.ent3_0",
"type": "protein",
"text": [
"CRT"
],
"offsets": [
[
27,
30
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "811"
},
{
"db_name": "hgnc",
"db_id": "CALR"
},
{
"db_name": "uniprot",
"db_id": "P27797"
}
]
},
{
"id": "1.0alpha7.train.267.ent4_0",
"type": "RNA",
"text": [
"C/EBPα mRNA"
],
"offsets": [
[
161,
172
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.267.coref0",
"entity_ids": [
"1.0alpha7.train.267.ent0_0"
]
},
{
"id": "1.0alpha7.train.267.coref1",
"entity_ids": [
"1.0alpha7.train.267.ent1_0",
"1.0alpha7.train.267.ent2_1"
]
},
{
"id": "1.0alpha7.train.267.coref2",
"entity_ids": [
"1.0alpha7.train.267.ent3_0"
]
},
{
"id": "1.0alpha7.train.267.coref3",
"entity_ids": [
"1.0alpha7.train.267.ent4_0"
]
}
] |
[] |
1.0alpha7.train.268
|
25166292
|
[
{
"id": "1.0alpha7.train.268.sent",
"type": "sentence",
"text": [
"These observations strongly suggest that electrostatic interactions provide a main driving force for the Ca2+-dependent binding of the C2A domain to syntaxin."
],
"offsets": [
[
0,
158
]
]
}
] |
[
{
"id": "1.0alpha7.train.268.ent0_0",
"type": "protein-family",
"text": [
"syntaxin"
],
"offsets": [
[
149,
157
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR006011"
}
]
},
{
"id": "1.0alpha7.train.268.ent1_0",
"type": "chemical",
"text": [
"Ca2+"
],
"offsets": [
[
105,
109
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "5460341"
}
]
},
{
"id": "1.0alpha7.train.268.ent2_0",
"type": "protein-domain",
"text": [
"C2A domain"
],
"offsets": [
[
135,
145
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.268.coref0",
"entity_ids": [
"1.0alpha7.train.268.ent0_0"
]
},
{
"id": "1.0alpha7.train.268.coref1",
"entity_ids": [
"1.0alpha7.train.268.ent1_0"
]
},
{
"id": "1.0alpha7.train.268.coref2",
"entity_ids": [
"1.0alpha7.train.268.ent2_0"
]
}
] |
[
{
"id": "1.0alpha7.train.268.rel0s1.0alpha7.train.268.ent0_0.o1.0alpha7.train.268.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.268.ent0_0",
"arg2_id": "1.0alpha7.train.268.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.269
|
20479913
|
[
{
"id": "1.0alpha7.train.269.sent",
"type": "sentence",
"text": [
"In this report, we show that AlF-C1 and AlF-C2 bind directly to Orc1, a subunit of ORC, and discuss that in mammalian cells, sequence-specific DNA-binding proteins might be involved in recruiting ORC to regulate replication initiation and/or transcription repression."
],
"offsets": [
[
0,
267
]
]
}
] |
[
{
"id": "1.0alpha7.train.269.ent0_0",
"type": "protein",
"text": [
"AlF-C2"
],
"offsets": [
[
40,
46
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.269.ent1_0",
"type": "protein",
"text": [
"AlF-C1"
],
"offsets": [
[
29,
35
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "O88311"
}
]
},
{
"id": "1.0alpha7.train.269.ent2_0",
"type": "DNA",
"text": [
"DNA"
],
"offsets": [
[
143,
146
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "25782"
},
{
"db_name": "hgnc",
"db_id": "RAB3GAP2"
},
{
"db_name": "uniprot",
"db_id": "Q9H2M9"
}
]
},
{
"id": "1.0alpha7.train.269.ent3_0",
"type": "protein-complex",
"text": [
"ORC"
],
"offsets": [
[
83,
86
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.269.ent4_1",
"type": "protein-complex",
"text": [
"ORC"
],
"offsets": [
[
196,
199
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.269.ent5_0",
"type": "protein",
"text": [
"Orc1"
],
"offsets": [
[
64,
68
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4998"
},
{
"db_name": "hgnc",
"db_id": "ORC1"
},
{
"db_name": "uniprot",
"db_id": "Q13415"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.269.coref0",
"entity_ids": [
"1.0alpha7.train.269.ent0_0"
]
},
{
"id": "1.0alpha7.train.269.coref1",
"entity_ids": [
"1.0alpha7.train.269.ent1_0"
]
},
{
"id": "1.0alpha7.train.269.coref2",
"entity_ids": [
"1.0alpha7.train.269.ent2_0"
]
},
{
"id": "1.0alpha7.train.269.coref3",
"entity_ids": [
"1.0alpha7.train.269.ent3_0",
"1.0alpha7.train.269.ent4_1"
]
},
{
"id": "1.0alpha7.train.269.coref4",
"entity_ids": [
"1.0alpha7.train.269.ent5_0"
]
}
] |
[
{
"id": "1.0alpha7.train.269.rel0s1.0alpha7.train.269.ent1_0.o1.0alpha7.train.269.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.269.ent1_0",
"arg2_id": "1.0alpha7.train.269.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.269.rel1s1.0alpha7.train.269.ent0_0.o1.0alpha7.train.269.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.269.ent0_0",
"arg2_id": "1.0alpha7.train.269.ent5_0",
"normalized": []
}
] |
1.0alpha7.train.270
|
15937374
|
[
{
"id": "1.0alpha7.train.270.sent",
"type": "sentence",
"text": [
"It has been shown that APC makes a complex with beta-catenin and that the phosphorylation of APC by GSK-3beta increases the binding of APC to beta-catenin ( 37)."
],
"offsets": [
[
0,
161
]
]
}
] |
[
{
"id": "1.0alpha7.train.270.ent0_0",
"type": "protein",
"text": [
"APC"
],
"offsets": [
[
23,
26
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "324"
},
{
"db_name": "hgnc",
"db_id": "APC"
}
]
},
{
"id": "1.0alpha7.train.270.ent1_1",
"type": "protein",
"text": [
"APC"
],
"offsets": [
[
93,
96
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "324"
},
{
"db_name": "hgnc",
"db_id": "APC"
}
]
},
{
"id": "1.0alpha7.train.270.ent2_2",
"type": "protein",
"text": [
"APC"
],
"offsets": [
[
135,
138
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "324"
},
{
"db_name": "hgnc",
"db_id": "APC"
}
]
},
{
"id": "1.0alpha7.train.270.ent3_0",
"type": "protein",
"text": [
"GSK-3beta"
],
"offsets": [
[
100,
109
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2932"
},
{
"db_name": "hgnc",
"db_id": "GSK3B"
},
{
"db_name": "uniprot",
"db_id": "P49841"
}
]
},
{
"id": "1.0alpha7.train.270.ent4_0",
"type": "protein",
"text": [
"beta-catenin"
],
"offsets": [
[
48,
60
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1499"
},
{
"db_name": "hgnc",
"db_id": "CTNNB1"
},
{
"db_name": "uniprot",
"db_id": "P35222"
}
]
},
{
"id": "1.0alpha7.train.270.ent5_1",
"type": "protein",
"text": [
"beta-catenin"
],
"offsets": [
[
142,
154
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1499"
},
{
"db_name": "hgnc",
"db_id": "CTNNB1"
},
{
"db_name": "uniprot",
"db_id": "P35222"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.270.coref0",
"entity_ids": [
"1.0alpha7.train.270.ent0_0",
"1.0alpha7.train.270.ent1_1",
"1.0alpha7.train.270.ent2_2"
]
},
{
"id": "1.0alpha7.train.270.coref1",
"entity_ids": [
"1.0alpha7.train.270.ent3_0"
]
},
{
"id": "1.0alpha7.train.270.coref2",
"entity_ids": [
"1.0alpha7.train.270.ent4_0",
"1.0alpha7.train.270.ent5_1"
]
}
] |
[
{
"id": "1.0alpha7.train.270.rel0s1.0alpha7.train.270.ent0_0.o1.0alpha7.train.270.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.270.ent0_0",
"arg2_id": "1.0alpha7.train.270.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.270.rel0s1.0alpha7.train.270.ent0_0.o1.0alpha7.train.270.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.270.ent0_0",
"arg2_id": "1.0alpha7.train.270.ent5_1",
"normalized": []
},
{
"id": "1.0alpha7.train.270.rel0s1.0alpha7.train.270.ent1_1.o1.0alpha7.train.270.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.270.ent1_1",
"arg2_id": "1.0alpha7.train.270.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.270.rel0s1.0alpha7.train.270.ent1_1.o1.0alpha7.train.270.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.270.ent1_1",
"arg2_id": "1.0alpha7.train.270.ent5_1",
"normalized": []
},
{
"id": "1.0alpha7.train.270.rel0s1.0alpha7.train.270.ent2_2.o1.0alpha7.train.270.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.270.ent2_2",
"arg2_id": "1.0alpha7.train.270.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.270.rel0s1.0alpha7.train.270.ent2_2.o1.0alpha7.train.270.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.270.ent2_2",
"arg2_id": "1.0alpha7.train.270.ent5_1",
"normalized": []
}
] |
1.0alpha7.train.271
|
3129207
|
[
{
"id": "1.0alpha7.train.271.sent",
"type": "sentence",
"text": [
"Interestingly, dTAFII110 also bound GST-IIAτ more abundantly than it bound to GST-αβ (Fig.4 C, lane 4)."
],
"offsets": [
[
0,
103
]
]
}
] |
[
{
"id": "1.0alpha7.train.271.ent0_0",
"type": "protein",
"text": [
"dTAFII110"
],
"offsets": [
[
15,
24
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "B7Z060"
}
]
},
{
"id": "1.0alpha7.train.271.ent1_0",
"type": "protein",
"text": [
"αβ"
],
"offsets": [
[
82,
84
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.271.ent2_0",
"type": "experiment-tag",
"text": [
"GST"
],
"offsets": [
[
36,
39
]
],
"normalized": [
{
"db_name": "intenz",
"db_id": "2.5.1.18"
}
]
},
{
"id": "1.0alpha7.train.271.ent3_1",
"type": "experiment-tag",
"text": [
"GST"
],
"offsets": [
[
78,
81
]
],
"normalized": [
{
"db_name": "intenz",
"db_id": "2.5.1.18"
}
]
},
{
"id": "1.0alpha7.train.271.ent4_0",
"type": "fusion-protein",
"text": [
"GST-αβ"
],
"offsets": [
[
78,
84
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.271.ent5_0",
"type": "fusion-protein",
"text": [
"GST-IIAτ"
],
"offsets": [
[
36,
44
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.271.ent6_0",
"type": "protein",
"text": [
"IIAτ"
],
"offsets": [
[
40,
44
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.271.coref0",
"entity_ids": [
"1.0alpha7.train.271.ent0_0"
]
},
{
"id": "1.0alpha7.train.271.coref1",
"entity_ids": [
"1.0alpha7.train.271.ent1_0"
]
},
{
"id": "1.0alpha7.train.271.coref2",
"entity_ids": [
"1.0alpha7.train.271.ent2_0",
"1.0alpha7.train.271.ent3_1"
]
},
{
"id": "1.0alpha7.train.271.coref3",
"entity_ids": [
"1.0alpha7.train.271.ent4_0"
]
},
{
"id": "1.0alpha7.train.271.coref4",
"entity_ids": [
"1.0alpha7.train.271.ent5_0"
]
},
{
"id": "1.0alpha7.train.271.coref5",
"entity_ids": [
"1.0alpha7.train.271.ent6_0"
]
}
] |
[
{
"id": "1.0alpha7.train.271.rel0s1.0alpha7.train.271.ent0_0.o1.0alpha7.train.271.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.271.ent0_0",
"arg2_id": "1.0alpha7.train.271.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.271.rel1s1.0alpha7.train.271.ent0_0.o1.0alpha7.train.271.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.271.ent0_0",
"arg2_id": "1.0alpha7.train.271.ent4_0",
"normalized": []
}
] |
1.0alpha7.train.272
|
19640896
|
[
{
"id": "1.0alpha7.train.272.sent",
"type": "sentence",
"text": [
"Hes6 binds to an Enhancer of Split E box and mediates transcriptional repression"
],
"offsets": [
[
0,
80
]
]
}
] |
[
{
"id": "1.0alpha7.train.272.ent0_0",
"type": "DNA",
"text": [
"Split E box"
],
"offsets": [
[
29,
40
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.272.ent1_0",
"type": "protein",
"text": [
"Hes6"
],
"offsets": [
[
0,
4
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "55502"
},
{
"db_name": "hgnc",
"db_id": "HES6"
},
{
"db_name": "uniprot",
"db_id": "B8ZZP9"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.272.coref0",
"entity_ids": [
"1.0alpha7.train.272.ent0_0"
]
},
{
"id": "1.0alpha7.train.272.coref1",
"entity_ids": [
"1.0alpha7.train.272.ent1_0"
]
}
] |
[
{
"id": "1.0alpha7.train.272.rel0s1.0alpha7.train.272.ent0_0.o1.0alpha7.train.272.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.272.ent0_0",
"arg2_id": "1.0alpha7.train.272.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.273
|
19640896
|
[
{
"id": "1.0alpha7.train.273.sent",
"type": "sentence",
"text": [
"Hes6 has been shown to act indirectly by binding other orange domain-containing proteins, rather than by acting as a DNA-binding transcription factor (Bae et al., 2000; Koyano-Nakagawa et al., 2000)."
],
"offsets": [
[
0,
199
]
]
}
] |
[
{
"id": "1.0alpha7.train.273.ent0_0",
"type": "DNA",
"text": [
"DNA"
],
"offsets": [
[
117,
120
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "25782"
},
{
"db_name": "hgnc",
"db_id": "RAB3GAP2"
},
{
"db_name": "uniprot",
"db_id": "Q9H2M9"
}
]
},
{
"id": "1.0alpha7.train.273.ent1_0",
"type": "protein",
"text": [
"Hes6"
],
"offsets": [
[
0,
4
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "55502"
},
{
"db_name": "hgnc",
"db_id": "HES6"
},
{
"db_name": "uniprot",
"db_id": "B8ZZP9"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.273.coref0",
"entity_ids": [
"1.0alpha7.train.273.ent0_0"
]
},
{
"id": "1.0alpha7.train.273.coref1",
"entity_ids": [
"1.0alpha7.train.273.ent1_0"
]
}
] |
[
{
"id": "1.0alpha7.train.273.rel0s1.0alpha7.train.273.ent0_0.o1.0alpha7.train.273.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.273.ent0_0",
"arg2_id": "1.0alpha7.train.273.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.274
|
4115477
|
[
{
"id": "1.0alpha7.train.274.sent",
"type": "sentence",
"text": [
"This model is supported by the inhibition of dynein-mediated transport by p50(dynamitin) expression ( 20, 28, 29), which dissociates the dynactin complex and separates the dynein binding subunit ( p150 Glued) from membrane binding subunits ( 30, 31)."
],
"offsets": [
[
0,
250
]
]
}
] |
[
{
"id": "1.0alpha7.train.274.ent0_0",
"type": "protein-family",
"text": [
"dynein"
],
"offsets": [
[
45,
51
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.274.ent1_1",
"type": "protein-family",
"text": [
"dynein"
],
"offsets": [
[
172,
178
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.274.ent2_0",
"type": "protein",
"text": [
"dynein binding subunit"
],
"offsets": [
[
172,
194
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.274.ent3_0",
"type": "protein",
"text": [
"p150 Glued"
],
"offsets": [
[
197,
207
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.274.ent4_0",
"type": "protein-complex",
"text": [
"dynactin"
],
"offsets": [
[
137,
145
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.274.coref0",
"entity_ids": [
"1.0alpha7.train.274.ent0_0",
"1.0alpha7.train.274.ent1_1"
]
},
{
"id": "1.0alpha7.train.274.coref1",
"entity_ids": [
"1.0alpha7.train.274.ent2_0",
"1.0alpha7.train.274.ent3_0"
]
},
{
"id": "1.0alpha7.train.274.coref2",
"entity_ids": [
"1.0alpha7.train.274.ent4_0"
]
}
] |
[
{
"id": "1.0alpha7.train.274.rel0s1.0alpha7.train.274.ent0_0.o1.0alpha7.train.274.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.274.ent0_0",
"arg2_id": "1.0alpha7.train.274.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.274.rel0s1.0alpha7.train.274.ent0_0.o1.0alpha7.train.274.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.274.ent0_0",
"arg2_id": "1.0alpha7.train.274.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.274.rel0s1.0alpha7.train.274.ent1_1.o1.0alpha7.train.274.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.274.ent1_1",
"arg2_id": "1.0alpha7.train.274.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.274.rel0s1.0alpha7.train.274.ent1_1.o1.0alpha7.train.274.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.274.ent1_1",
"arg2_id": "1.0alpha7.train.274.ent3_0",
"normalized": []
}
] |
1.0alpha7.train.275
|
20230417
|
[
{
"id": "1.0alpha7.train.275.sent",
"type": "sentence",
"text": [
"LZ and PNT both directly bind to the pros promoter/enhancer region and pros expression occurs only when PNT and LZ have bound simultaneously to the pros enhancer/promoter."
],
"offsets": [
[
0,
171
]
]
}
] |
[
{
"id": "1.0alpha7.train.275.ent0_0",
"type": "protein",
"text": [
"LZ"
],
"offsets": [
[
0,
2
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "Q27J10"
}
]
},
{
"id": "1.0alpha7.train.275.ent1_1",
"type": "protein",
"text": [
"LZ"
],
"offsets": [
[
112,
114
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "Q27J10"
}
]
},
{
"id": "1.0alpha7.train.275.ent2_0",
"type": "protein",
"text": [
"PNT"
],
"offsets": [
[
7,
10
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P51023"
}
]
},
{
"id": "1.0alpha7.train.275.ent3_1",
"type": "protein",
"text": [
"PNT"
],
"offsets": [
[
104,
107
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P51023"
}
]
},
{
"id": "1.0alpha7.train.275.ent4_0",
"type": "DNA",
"text": [
"pros promoter/enhancer"
],
"offsets": [
[
37,
59
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.275.coref0",
"entity_ids": [
"1.0alpha7.train.275.ent0_0",
"1.0alpha7.train.275.ent1_1"
]
},
{
"id": "1.0alpha7.train.275.coref1",
"entity_ids": [
"1.0alpha7.train.275.ent2_0",
"1.0alpha7.train.275.ent3_1"
]
},
{
"id": "1.0alpha7.train.275.coref2",
"entity_ids": [
"1.0alpha7.train.275.ent4_0"
]
}
] |
[
{
"id": "1.0alpha7.train.275.rel0s1.0alpha7.train.275.ent0_0.o1.0alpha7.train.275.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.275.ent0_0",
"arg2_id": "1.0alpha7.train.275.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.275.rel0s1.0alpha7.train.275.ent1_1.o1.0alpha7.train.275.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.275.ent1_1",
"arg2_id": "1.0alpha7.train.275.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.275.rel1s1.0alpha7.train.275.ent2_0.o1.0alpha7.train.275.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.275.ent2_0",
"arg2_id": "1.0alpha7.train.275.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.275.rel1s1.0alpha7.train.275.ent3_1.o1.0alpha7.train.275.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.275.ent3_1",
"arg2_id": "1.0alpha7.train.275.ent4_0",
"normalized": []
}
] |
1.0alpha7.train.276
|
4912938
|
[
{
"id": "1.0alpha7.train.276.sent",
"type": "sentence",
"text": [
"HIP1 and HIP12 display differential binding to F-actin, AP2, and clathrin."
],
"offsets": [
[
0,
74
]
]
}
] |
[
{
"id": "1.0alpha7.train.276.ent0_0",
"type": "protein",
"text": [
"F-actin"
],
"offsets": [
[
47,
54
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.276.ent1_0",
"type": "protein",
"text": [
"AP2"
],
"offsets": [
[
56,
59
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7020"
},
{
"db_name": "hgnc",
"db_id": "TFAP2A"
},
{
"db_name": "uniprot",
"db_id": "P05549"
}
]
},
{
"id": "1.0alpha7.train.276.ent2_0",
"type": "protein",
"text": [
"clathrin"
],
"offsets": [
[
65,
73
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1211"
},
{
"db_name": "hgnc",
"db_id": "CLTA"
},
{
"db_name": "uniprot",
"db_id": "P09496"
}
]
},
{
"id": "1.0alpha7.train.276.ent3_0",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
49,
54
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
},
{
"id": "1.0alpha7.train.276.ent4_0",
"type": "protein",
"text": [
"HIP1"
],
"offsets": [
[
0,
4
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3092"
},
{
"db_name": "hgnc",
"db_id": "HIP1"
}
]
},
{
"id": "1.0alpha7.train.276.ent5_0",
"type": "protein",
"text": [
"HIP12"
],
"offsets": [
[
9,
14
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "9026"
},
{
"db_name": "hgnc",
"db_id": "HIP1R"
},
{
"db_name": "uniprot",
"db_id": "O75146"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.276.coref0",
"entity_ids": [
"1.0alpha7.train.276.ent0_0"
]
},
{
"id": "1.0alpha7.train.276.coref1",
"entity_ids": [
"1.0alpha7.train.276.ent1_0"
]
},
{
"id": "1.0alpha7.train.276.coref2",
"entity_ids": [
"1.0alpha7.train.276.ent2_0"
]
},
{
"id": "1.0alpha7.train.276.coref3",
"entity_ids": [
"1.0alpha7.train.276.ent3_0"
]
},
{
"id": "1.0alpha7.train.276.coref4",
"entity_ids": [
"1.0alpha7.train.276.ent4_0"
]
},
{
"id": "1.0alpha7.train.276.coref5",
"entity_ids": [
"1.0alpha7.train.276.ent5_0"
]
}
] |
[
{
"id": "1.0alpha7.train.276.rel0s1.0alpha7.train.276.ent0_0.o1.0alpha7.train.276.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.276.ent0_0",
"arg2_id": "1.0alpha7.train.276.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.276.rel1s1.0alpha7.train.276.ent1_0.o1.0alpha7.train.276.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.276.ent1_0",
"arg2_id": "1.0alpha7.train.276.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.276.rel2s1.0alpha7.train.276.ent2_0.o1.0alpha7.train.276.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.276.ent2_0",
"arg2_id": "1.0alpha7.train.276.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.276.rel3s1.0alpha7.train.276.ent0_0.o1.0alpha7.train.276.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.276.ent0_0",
"arg2_id": "1.0alpha7.train.276.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.276.rel4s1.0alpha7.train.276.ent1_0.o1.0alpha7.train.276.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.276.ent1_0",
"arg2_id": "1.0alpha7.train.276.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.276.rel5s1.0alpha7.train.276.ent2_0.o1.0alpha7.train.276.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.276.ent2_0",
"arg2_id": "1.0alpha7.train.276.ent5_0",
"normalized": []
}
] |
1.0alpha7.train.277
|
2434981
|
[
{
"id": "1.0alpha7.train.277.sent",
"type": "sentence",
"text": [
"In this study, we identified binding domains of GSK-3β and β-catenin in Axin."
],
"offsets": [
[
0,
77
]
]
}
] |
[
{
"id": "1.0alpha7.train.277.ent0_0",
"type": "protein",
"text": [
"β-catenin"
],
"offsets": [
[
59,
68
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1499"
},
{
"db_name": "hgnc",
"db_id": "CTNNB1"
},
{
"db_name": "uniprot",
"db_id": "P35222"
}
]
},
{
"id": "1.0alpha7.train.277.ent1_0",
"type": "protein",
"text": [
"Axin"
],
"offsets": [
[
72,
76
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "8312"
},
{
"db_name": "hgnc",
"db_id": "AXIN1"
},
{
"db_name": "uniprot",
"db_id": "O15169"
}
]
},
{
"id": "1.0alpha7.train.277.ent2_0",
"type": "protein",
"text": [
"GSK-3β"
],
"offsets": [
[
48,
54
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "2932"
},
{
"db_name": "hgnc",
"db_id": "GSK3B"
},
{
"db_name": "uniprot",
"db_id": "P49841"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.277.coref0",
"entity_ids": [
"1.0alpha7.train.277.ent0_0"
]
},
{
"id": "1.0alpha7.train.277.coref1",
"entity_ids": [
"1.0alpha7.train.277.ent1_0"
]
},
{
"id": "1.0alpha7.train.277.coref2",
"entity_ids": [
"1.0alpha7.train.277.ent2_0"
]
}
] |
[
{
"id": "1.0alpha7.train.277.rel0s1.0alpha7.train.277.ent1_0.o1.0alpha7.train.277.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.277.ent1_0",
"arg2_id": "1.0alpha7.train.277.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.277.rel1s1.0alpha7.train.277.ent0_0.o1.0alpha7.train.277.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.277.ent0_0",
"arg2_id": "1.0alpha7.train.277.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.278
|
11107237
|
[
{
"id": "1.0alpha7.train.278.sent",
"type": "sentence",
"text": [
"(A) Inhibition of BMP-7 binding to ROS 17/2."
],
"offsets": [
[
0,
44
]
]
}
] |
[
{
"id": "1.0alpha7.train.278.ent0_0",
"type": "protein",
"text": [
"BMP-7"
],
"offsets": [
[
18,
23
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "655"
},
{
"db_name": "hgnc",
"db_id": "BMP7"
},
{
"db_name": "uniprot",
"db_id": "P18075"
}
]
},
{
"id": "1.0alpha7.train.278.ent1_0",
"type": "cell",
"text": [
"ROS 17/2"
],
"offsets": [
[
35,
43
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.278.coref0",
"entity_ids": [
"1.0alpha7.train.278.ent0_0"
]
},
{
"id": "1.0alpha7.train.278.coref1",
"entity_ids": [
"1.0alpha7.train.278.ent1_0"
]
}
] |
[] |
1.0alpha7.train.279
|
15373484
|
[
{
"id": "1.0alpha7.train.279.sent",
"type": "sentence",
"text": [
"To further investigate a possible role for ESEs in U2AF35-dependent splicing, an experiment was designed to test a critical tenet of the recruitment model for exon enhancer function: SR proteins bound to the enhancer sequence establish protein-protein interactions with U2AF35 that increase the local concentration of the U2AF heterodimer and facilitate U2AF65 binding to the Py tract (13)."
],
"offsets": [
[
0,
390
]
]
}
] |
[
{
"id": "1.0alpha7.train.279.ent0_0",
"type": "DNA",
"text": [
"ESEs"
],
"offsets": [
[
43,
47
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.279.ent1_0",
"type": "protein-family",
"text": [
"SR"
],
"offsets": [
[
183,
185
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.279.ent2_0",
"type": "protein",
"text": [
"U2AF65"
],
"offsets": [
[
354,
360
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "11338"
},
{
"db_name": "hgnc",
"db_id": "U2AF2"
},
{
"db_name": "uniprot",
"db_id": "P26368"
}
]
},
{
"id": "1.0alpha7.train.279.ent3_0",
"type": "protein-complex",
"text": [
"U2AF"
],
"offsets": [
[
322,
326
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.279.ent4_0",
"type": "protein",
"text": [
"U2AF35"
],
"offsets": [
[
51,
57
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7307"
},
{
"db_name": "hgnc",
"db_id": "U2AF1"
},
{
"db_name": "uniprot",
"db_id": "Q01081"
}
]
},
{
"id": "1.0alpha7.train.279.ent5_1",
"type": "protein",
"text": [
"U2AF35"
],
"offsets": [
[
270,
276
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7307"
},
{
"db_name": "hgnc",
"db_id": "U2AF1"
},
{
"db_name": "uniprot",
"db_id": "Q01081"
}
]
},
{
"id": "1.0alpha7.train.279.ent6_0",
"type": "DNA",
"text": [
"Py tract"
],
"offsets": [
[
376,
384
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.279.coref0",
"entity_ids": [
"1.0alpha7.train.279.ent0_0"
]
},
{
"id": "1.0alpha7.train.279.coref1",
"entity_ids": [
"1.0alpha7.train.279.ent1_0"
]
},
{
"id": "1.0alpha7.train.279.coref2",
"entity_ids": [
"1.0alpha7.train.279.ent2_0"
]
},
{
"id": "1.0alpha7.train.279.coref3",
"entity_ids": [
"1.0alpha7.train.279.ent3_0"
]
},
{
"id": "1.0alpha7.train.279.coref4",
"entity_ids": [
"1.0alpha7.train.279.ent4_0",
"1.0alpha7.train.279.ent5_1"
]
},
{
"id": "1.0alpha7.train.279.coref5",
"entity_ids": [
"1.0alpha7.train.279.ent6_0"
]
}
] |
[
{
"id": "1.0alpha7.train.279.rel0s1.0alpha7.train.279.ent1_0.o1.0alpha7.train.279.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.279.ent1_0",
"arg2_id": "1.0alpha7.train.279.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.279.rel0s1.0alpha7.train.279.ent1_0.o1.0alpha7.train.279.ent5_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.279.ent1_0",
"arg2_id": "1.0alpha7.train.279.ent5_1",
"normalized": []
},
{
"id": "1.0alpha7.train.279.rel1s1.0alpha7.train.279.ent2_0.o1.0alpha7.train.279.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.279.ent2_0",
"arg2_id": "1.0alpha7.train.279.ent6_0",
"normalized": []
}
] |
1.0alpha7.train.280
|
19339178
|
[
{
"id": "1.0alpha7.train.280.sent",
"type": "sentence",
"text": [
"Further indirect evidence for actin binding by HtsRC comes from cher mutants in which HtsRC is redirected to the actin-rich nurse-cell plasma membrane [15] ."
],
"offsets": [
[
0,
157
]
]
}
] |
[
{
"id": "1.0alpha7.train.280.ent0_0",
"type": "protein",
"text": [
"HtsRC"
],
"offsets": [
[
47,
52
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.280.ent1_1",
"type": "protein",
"text": [
"HtsRC"
],
"offsets": [
[
86,
91
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.280.ent2_0",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
30,
35
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
},
{
"id": "1.0alpha7.train.280.ent3_1",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
113,
118
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.280.coref0",
"entity_ids": [
"1.0alpha7.train.280.ent0_0",
"1.0alpha7.train.280.ent1_1"
]
},
{
"id": "1.0alpha7.train.280.coref1",
"entity_ids": [
"1.0alpha7.train.280.ent2_0",
"1.0alpha7.train.280.ent3_1"
]
}
] |
[
{
"id": "1.0alpha7.train.280.rel0s1.0alpha7.train.280.ent0_0.o1.0alpha7.train.280.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.280.ent0_0",
"arg2_id": "1.0alpha7.train.280.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.280.rel0s1.0alpha7.train.280.ent0_0.o1.0alpha7.train.280.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.280.ent0_0",
"arg2_id": "1.0alpha7.train.280.ent3_1",
"normalized": []
},
{
"id": "1.0alpha7.train.280.rel0s1.0alpha7.train.280.ent1_1.o1.0alpha7.train.280.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.280.ent1_1",
"arg2_id": "1.0alpha7.train.280.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.280.rel0s1.0alpha7.train.280.ent1_1.o1.0alpha7.train.280.ent3_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.280.ent1_1",
"arg2_id": "1.0alpha7.train.280.ent3_1",
"normalized": []
}
] |
1.0alpha7.train.281
|
6392213
|
[
{
"id": "1.0alpha7.train.281.sent",
"type": "sentence",
"text": [
"Because Ubc9 binds such an NLS sequence, we propose three potential mechanisms for the role of Ubc9 in nuclear import."
],
"offsets": [
[
0,
118
]
]
}
] |
[
{
"id": "1.0alpha7.train.281.ent0_0",
"type": "protein",
"text": [
"Ubc9"
],
"offsets": [
[
8,
12
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7329"
},
{
"db_name": "hgnc",
"db_id": "UBE2I"
},
{
"db_name": "uniprot",
"db_id": "P63279"
}
]
},
{
"id": "1.0alpha7.train.281.ent1_1",
"type": "protein",
"text": [
"Ubc9"
],
"offsets": [
[
95,
99
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7329"
},
{
"db_name": "hgnc",
"db_id": "UBE2I"
},
{
"db_name": "uniprot",
"db_id": "P63279"
}
]
},
{
"id": "1.0alpha7.train.281.ent2_0",
"type": "protein-motif",
"text": [
"NLS"
],
"offsets": [
[
27,
30
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.281.coref0",
"entity_ids": [
"1.0alpha7.train.281.ent0_0",
"1.0alpha7.train.281.ent1_1"
]
},
{
"id": "1.0alpha7.train.281.coref1",
"entity_ids": [
"1.0alpha7.train.281.ent2_0"
]
}
] |
[] |
1.0alpha7.train.282
|
23643688
|
[
{
"id": "1.0alpha7.train.282.sent",
"type": "sentence",
"text": [
"As shown in Figure 7 A, deletion of these 35 amino acids results in the loss of binding between dSlo and PKAc."
],
"offsets": [
[
0,
110
]
]
}
] |
[
{
"id": "1.0alpha7.train.282.ent0_0",
"type": "protein",
"text": [
"dSlo"
],
"offsets": [
[
96,
100
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "Q03720"
}
]
},
{
"id": "1.0alpha7.train.282.ent1_0",
"type": "protein",
"text": [
"PKAc"
],
"offsets": [
[
105,
109
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5566"
},
{
"db_name": "hgnc",
"db_id": "PRKACA"
},
{
"db_name": "uniprot",
"db_id": "P17612"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.282.coref0",
"entity_ids": [
"1.0alpha7.train.282.ent0_0"
]
},
{
"id": "1.0alpha7.train.282.coref1",
"entity_ids": [
"1.0alpha7.train.282.ent1_0"
]
}
] |
[
{
"id": "1.0alpha7.train.282.rel0s1.0alpha7.train.282.ent0_0.o1.0alpha7.train.282.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.282.ent0_0",
"arg2_id": "1.0alpha7.train.282.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.283
|
15370882
|
[
{
"id": "1.0alpha7.train.283.sent",
"type": "sentence",
"text": [
"(B) Binding of a NES to CRM1 occurs in a tripartite complex with RanGTP."
],
"offsets": [
[
0,
72
]
]
}
] |
[
{
"id": "1.0alpha7.train.283.ent0_0",
"type": "protein",
"text": [
"CRM1"
],
"offsets": [
[
24,
28
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7514"
},
{
"db_name": "hgnc",
"db_id": "XPO1"
},
{
"db_name": "uniprot",
"db_id": "O14980"
}
]
},
{
"id": "1.0alpha7.train.283.ent1_0",
"type": "protein",
"text": [
"RanGTP"
],
"offsets": [
[
65,
71
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5901"
},
{
"db_name": "hgnc",
"db_id": "RAN"
},
{
"db_name": "uniprot",
"db_id": "P62826"
}
]
},
{
"id": "1.0alpha7.train.283.ent2_0",
"type": "protein-motif",
"text": [
"NES"
],
"offsets": [
[
17,
20
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.283.coref0",
"entity_ids": [
"1.0alpha7.train.283.ent0_0"
]
},
{
"id": "1.0alpha7.train.283.coref1",
"entity_ids": [
"1.0alpha7.train.283.ent1_0"
]
},
{
"id": "1.0alpha7.train.283.coref2",
"entity_ids": [
"1.0alpha7.train.283.ent2_0"
]
}
] |
[] |
1.0alpha7.train.284
|
123458
|
[
{
"id": "1.0alpha7.train.284.sent",
"type": "sentence",
"text": [
"For in vitro kinase assays, 15 μl of GST or GST-Cx43CT bound to glutathione-Sepharose 4B beads (washed once in kinase buffer) were incubated with purified kinase-active pp60 c-src, kinase buffer (20 mM HEPES (pH 7.4), 12 mM MnCl2, 1 mM dithothreitol, 100 μM Na2VO4) and 10 μCi of ATP (DuPont NEN, NEG-002Z, 6000 Ci/mmol) in a total volume of 40 μl for 15 min at room temperature."
],
"offsets": [
[
0,
379
]
]
}
] |
[
{
"id": "1.0alpha7.train.284.ent0_0",
"type": "experiment-tag",
"text": [
"GST"
],
"offsets": [
[
37,
40
]
],
"normalized": [
{
"db_name": "intenz",
"db_id": "2.5.1.18"
}
]
},
{
"id": "1.0alpha7.train.284.ent1_1",
"type": "experiment-tag",
"text": [
"GST"
],
"offsets": [
[
44,
47
]
],
"normalized": [
{
"db_name": "intenz",
"db_id": "2.5.1.18"
}
]
},
{
"id": "1.0alpha7.train.284.ent2_0",
"type": "reagent",
"text": [
"HEPES"
],
"offsets": [
[
202,
207
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.284.ent3_0",
"type": "reagent",
"text": [
"kinase-active pp60"
],
"offsets": [
[
155,
173
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.284.ent4_0",
"type": "reagent",
"text": [
"ATP"
],
"offsets": [
[
280,
283
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.284.ent5_0",
"type": "experimental-construct",
"text": [
"GST-Cx43CT"
],
"offsets": [
[
44,
54
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.284.ent6_0",
"type": "reagent",
"text": [
"glutathione-Sepharose 4B"
],
"offsets": [
[
64,
88
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.284.coref0",
"entity_ids": [
"1.0alpha7.train.284.ent0_0",
"1.0alpha7.train.284.ent1_1"
]
},
{
"id": "1.0alpha7.train.284.coref1",
"entity_ids": [
"1.0alpha7.train.284.ent2_0"
]
},
{
"id": "1.0alpha7.train.284.coref2",
"entity_ids": [
"1.0alpha7.train.284.ent3_0"
]
},
{
"id": "1.0alpha7.train.284.coref3",
"entity_ids": [
"1.0alpha7.train.284.ent4_0"
]
},
{
"id": "1.0alpha7.train.284.coref4",
"entity_ids": [
"1.0alpha7.train.284.ent5_0"
]
},
{
"id": "1.0alpha7.train.284.coref5",
"entity_ids": [
"1.0alpha7.train.284.ent6_0"
]
}
] |
[] |
1.0alpha7.train.285
|
13126995
|
[
{
"id": "1.0alpha7.train.285.sent",
"type": "sentence",
"text": [
"In the absence of calcium, TnI binding to actin holds the Tm-Tn complex in the \"`closed\"` state in which the myosin-binding site is occluded, preventing myosin from binding actin."
],
"offsets": [
[
0,
179
]
]
}
] |
[
{
"id": "1.0alpha7.train.285.ent0_0",
"type": "chemical",
"text": [
"calcium"
],
"offsets": [
[
18,
25
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "5460341"
}
]
},
{
"id": "1.0alpha7.train.285.ent1_0",
"type": "protein-complex",
"text": [
"Tm-Tn"
],
"offsets": [
[
58,
63
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.285.ent2_0",
"type": "protein-complex",
"text": [
"myosin"
],
"offsets": [
[
109,
115
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.285.ent3_1",
"type": "protein-complex",
"text": [
"myosin"
],
"offsets": [
[
153,
159
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.285.ent4_0",
"type": "protein",
"text": [
"TnI"
],
"offsets": [
[
27,
30
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7134"
},
{
"db_name": "hgnc",
"db_id": "TNNC1"
},
{
"db_name": "uniprot",
"db_id": "P63316"
}
]
},
{
"id": "1.0alpha7.train.285.ent5_0",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
42,
47
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
},
{
"id": "1.0alpha7.train.285.ent6_1",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
173,
178
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.285.coref0",
"entity_ids": [
"1.0alpha7.train.285.ent0_0"
]
},
{
"id": "1.0alpha7.train.285.coref1",
"entity_ids": [
"1.0alpha7.train.285.ent1_0"
]
},
{
"id": "1.0alpha7.train.285.coref2",
"entity_ids": [
"1.0alpha7.train.285.ent2_0",
"1.0alpha7.train.285.ent3_1"
]
},
{
"id": "1.0alpha7.train.285.coref3",
"entity_ids": [
"1.0alpha7.train.285.ent4_0"
]
},
{
"id": "1.0alpha7.train.285.coref4",
"entity_ids": [
"1.0alpha7.train.285.ent5_0",
"1.0alpha7.train.285.ent6_1"
]
}
] |
[
{
"id": "1.0alpha7.train.285.rel0s1.0alpha7.train.285.ent4_0.o1.0alpha7.train.285.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.285.ent4_0",
"arg2_id": "1.0alpha7.train.285.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.285.rel0s1.0alpha7.train.285.ent4_0.o1.0alpha7.train.285.ent6_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.285.ent4_0",
"arg2_id": "1.0alpha7.train.285.ent6_1",
"normalized": []
},
{
"id": "1.0alpha7.train.285.rel1s1.0alpha7.train.285.ent2_0.o1.0alpha7.train.285.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.285.ent2_0",
"arg2_id": "1.0alpha7.train.285.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.285.rel1s1.0alpha7.train.285.ent2_0.o1.0alpha7.train.285.ent6_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.285.ent2_0",
"arg2_id": "1.0alpha7.train.285.ent6_1",
"normalized": []
},
{
"id": "1.0alpha7.train.285.rel1s1.0alpha7.train.285.ent3_1.o1.0alpha7.train.285.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.285.ent3_1",
"arg2_id": "1.0alpha7.train.285.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.285.rel1s1.0alpha7.train.285.ent3_1.o1.0alpha7.train.285.ent6_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.285.ent3_1",
"arg2_id": "1.0alpha7.train.285.ent6_1",
"normalized": []
},
{
"id": "1.0alpha7.train.285.rel2s1.0alpha7.train.285.ent2_0.o1.0alpha7.train.285.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.285.ent2_0",
"arg2_id": "1.0alpha7.train.285.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.285.rel2s1.0alpha7.train.285.ent2_0.o1.0alpha7.train.285.ent6_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.285.ent2_0",
"arg2_id": "1.0alpha7.train.285.ent6_1",
"normalized": []
},
{
"id": "1.0alpha7.train.285.rel2s1.0alpha7.train.285.ent3_1.o1.0alpha7.train.285.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.285.ent3_1",
"arg2_id": "1.0alpha7.train.285.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.285.rel2s1.0alpha7.train.285.ent3_1.o1.0alpha7.train.285.ent6_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.285.ent3_1",
"arg2_id": "1.0alpha7.train.285.ent6_1",
"normalized": []
}
] |
1.0alpha7.train.286
|
16243889
|
[
{
"id": "1.0alpha7.train.286.sent",
"type": "sentence",
"text": [
"The 2.8 angstrom crystal structure of ZAG resembles a class I major histocompatibility complex (MHC) heavy chain, but ZAG does not bind the class I light chain beta2-microglobulin. "
],
"offsets": [
[
0,
181
]
]
}
] |
[
{
"id": "1.0alpha7.train.286.ent0_0",
"type": "protein",
"text": [
"ZAG"
],
"offsets": [
[
38,
41
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "563"
},
{
"db_name": "hgnc",
"db_id": "AZGP1"
},
{
"db_name": "uniprot",
"db_id": "P25311"
}
]
},
{
"id": "1.0alpha7.train.286.ent1_1",
"type": "protein",
"text": [
"ZAG"
],
"offsets": [
[
118,
121
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "563"
},
{
"db_name": "hgnc",
"db_id": "AZGP1"
},
{
"db_name": "uniprot",
"db_id": "P25311"
}
]
},
{
"id": "1.0alpha7.train.286.ent2_0",
"type": "protein",
"text": [
"beta2-microglobulin"
],
"offsets": [
[
160,
179
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "567"
},
{
"db_name": "hgnc",
"db_id": "B2M"
},
{
"db_name": "uniprot",
"db_id": "P61769"
}
]
},
{
"id": "1.0alpha7.train.286.ent3_0",
"type": "protein-family",
"text": [
"MHC"
],
"offsets": [
[
96,
99
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.286.ent4_0",
"type": "protein-family",
"text": [
"class I major histocompatibility complex"
],
"offsets": [
[
54,
94
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.286.coref0",
"entity_ids": [
"1.0alpha7.train.286.ent0_0",
"1.0alpha7.train.286.ent1_1"
]
},
{
"id": "1.0alpha7.train.286.coref1",
"entity_ids": [
"1.0alpha7.train.286.ent2_0"
]
},
{
"id": "1.0alpha7.train.286.coref2",
"entity_ids": [
"1.0alpha7.train.286.ent3_0",
"1.0alpha7.train.286.ent4_0"
]
}
] |
[
{
"id": "1.0alpha7.train.286.rel0s1.0alpha7.train.286.ent0_0.o1.0alpha7.train.286.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.286.ent0_0",
"arg2_id": "1.0alpha7.train.286.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.286.rel0s1.0alpha7.train.286.ent1_1.o1.0alpha7.train.286.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.286.ent1_1",
"arg2_id": "1.0alpha7.train.286.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.287
|
11474448
|
[
{
"id": "1.0alpha7.train.287.sent",
"type": "sentence",
"text": [
" Precursor proteins that do not bind to MSF, or that bind preferentially to hsp70, bypass the Tom70-Tom37 complex and are targeted directly to Tom20-Tom22 (Hachiya et al., 1995 ). "
],
"offsets": [
[
0,
187
]
]
}
] |
[
{
"id": "1.0alpha7.train.287.ent0_0",
"type": "protein-complex",
"text": [
"Tom70-Tom37"
],
"offsets": [
[
97,
108
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.287.ent1_0",
"type": "protein-complex",
"text": [
"Tom20-Tom22"
],
"offsets": [
[
147,
158
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.287.ent2_0",
"type": "protein",
"text": [
"Tom70"
],
"offsets": [
[
97,
102
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P07213"
}
]
},
{
"id": "1.0alpha7.train.287.ent3_0",
"type": "protein-family",
"text": [
"hsp70"
],
"offsets": [
[
78,
83
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR013126"
}
]
},
{
"id": "1.0alpha7.train.287.ent4_0",
"type": "protein",
"text": [
"MSF"
],
"offsets": [
[
41,
44
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "10801"
},
{
"db_name": "hgnc",
"db_id": "SEPT9"
},
{
"db_name": "uniprot",
"db_id": "Q9UHD8"
}
]
},
{
"id": "1.0alpha7.train.287.ent5_0",
"type": "protein",
"text": [
"Tom20"
],
"offsets": [
[
147,
152
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P35180"
}
]
},
{
"id": "1.0alpha7.train.287.ent6_0",
"type": "protein",
"text": [
"Tom22"
],
"offsets": [
[
153,
158
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P49334"
}
]
},
{
"id": "1.0alpha7.train.287.ent7_0",
"type": "protein",
"text": [
"Tom37"
],
"offsets": [
[
103,
108
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P50110"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.287.coref0",
"entity_ids": [
"1.0alpha7.train.287.ent0_0"
]
},
{
"id": "1.0alpha7.train.287.coref1",
"entity_ids": [
"1.0alpha7.train.287.ent1_0"
]
},
{
"id": "1.0alpha7.train.287.coref2",
"entity_ids": [
"1.0alpha7.train.287.ent2_0"
]
},
{
"id": "1.0alpha7.train.287.coref3",
"entity_ids": [
"1.0alpha7.train.287.ent3_0"
]
},
{
"id": "1.0alpha7.train.287.coref4",
"entity_ids": [
"1.0alpha7.train.287.ent4_0"
]
},
{
"id": "1.0alpha7.train.287.coref5",
"entity_ids": [
"1.0alpha7.train.287.ent5_0"
]
},
{
"id": "1.0alpha7.train.287.coref6",
"entity_ids": [
"1.0alpha7.train.287.ent6_0"
]
},
{
"id": "1.0alpha7.train.287.coref7",
"entity_ids": [
"1.0alpha7.train.287.ent7_0"
]
}
] |
[
{
"id": "1.0alpha7.train.287.rel0s1.0alpha7.train.287.ent2_0.o1.0alpha7.train.287.ent7_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.287.ent2_0",
"arg2_id": "1.0alpha7.train.287.ent7_0",
"normalized": []
},
{
"id": "1.0alpha7.train.287.rel1s1.0alpha7.train.287.ent5_0.o1.0alpha7.train.287.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.287.ent5_0",
"arg2_id": "1.0alpha7.train.287.ent6_0",
"normalized": []
}
] |
1.0alpha7.train.288
|
4211455
|
[
{
"id": "1.0alpha7.train.288.sent",
"type": "sentence",
"text": [
"The Effect of dI2dIII1 Complex Formation on NADH Binding to dI"
],
"offsets": [
[
0,
62
]
]
}
] |
[
{
"id": "1.0alpha7.train.288.ent0_0",
"type": "protein",
"text": [
"dI"
],
"offsets": [
[
60,
62
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.288.ent1_0",
"type": "chemical",
"text": [
"NADH"
],
"offsets": [
[
44,
48
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "439153"
}
]
},
{
"id": "1.0alpha7.train.288.ent2_0",
"type": "protein-complex",
"text": [
"dI2dIII1 Complex"
],
"offsets": [
[
14,
30
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.288.coref0",
"entity_ids": [
"1.0alpha7.train.288.ent0_0"
]
},
{
"id": "1.0alpha7.train.288.coref1",
"entity_ids": [
"1.0alpha7.train.288.ent1_0"
]
},
{
"id": "1.0alpha7.train.288.coref2",
"entity_ids": [
"1.0alpha7.train.288.ent2_0"
]
}
] |
[
{
"id": "1.0alpha7.train.288.rel0s1.0alpha7.train.288.ent0_0.o1.0alpha7.train.288.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.288.ent0_0",
"arg2_id": "1.0alpha7.train.288.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.289
|
4211455
|
[
{
"id": "1.0alpha7.train.289.sent",
"type": "sentence",
"text": [
"Experiments using equilibrium dialysis (39) and protein fluorescence quenching (11) showed that NADH binds to isolated R. rubrum dI protein with a K d≈ 20 μM. "
],
"offsets": [
[
0,
159
]
]
}
] |
[
{
"id": "1.0alpha7.train.289.ent0_0",
"type": "cell",
"text": [
"R. rubrum"
],
"offsets": [
[
119,
128
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.289.ent1_0",
"type": "chemical",
"text": [
"NADH"
],
"offsets": [
[
96,
100
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "439153"
}
]
},
{
"id": "1.0alpha7.train.289.ent2_0",
"type": "protein",
"text": [
"dI"
],
"offsets": [
[
129,
131
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.289.coref0",
"entity_ids": [
"1.0alpha7.train.289.ent0_0"
]
},
{
"id": "1.0alpha7.train.289.coref1",
"entity_ids": [
"1.0alpha7.train.289.ent1_0"
]
},
{
"id": "1.0alpha7.train.289.coref2",
"entity_ids": [
"1.0alpha7.train.289.ent2_0"
]
}
] |
[
{
"id": "1.0alpha7.train.289.rel0s1.0alpha7.train.289.ent1_0.o1.0alpha7.train.289.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.289.ent1_0",
"arg2_id": "1.0alpha7.train.289.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.290
|
16065821
|
[
{
"id": "1.0alpha7.train.290.sent",
"type": "sentence",
"text": [
" As the binding of ORC and MCM proteins occurs at or very near the origin, we determined the genome-wide locations of ORC- and MCM-binding sites to identify the positions of potential DNA replication origins across the S. cerevisiae genome. "
],
"offsets": [
[
0,
248
]
]
}
] |
[
{
"id": "1.0alpha7.train.290.ent0_0",
"type": "protein-complex",
"text": [
"MCM"
],
"offsets": [
[
29,
32
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.290.ent1_1",
"type": "protein-complex",
"text": [
"MCM"
],
"offsets": [
[
131,
134
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.290.ent2_0",
"type": "DNA",
"text": [
"DNA"
],
"offsets": [
[
188,
191
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "25782"
},
{
"db_name": "hgnc",
"db_id": "RAB3GAP2"
},
{
"db_name": "uniprot",
"db_id": "Q9H2M9"
}
]
},
{
"id": "1.0alpha7.train.290.ent3_0",
"type": "protein-complex",
"text": [
"ORC"
],
"offsets": [
[
20,
23
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.290.ent4_1",
"type": "protein-complex",
"text": [
"ORC"
],
"offsets": [
[
121,
124
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.290.coref0",
"entity_ids": [
"1.0alpha7.train.290.ent0_0",
"1.0alpha7.train.290.ent1_1"
]
},
{
"id": "1.0alpha7.train.290.coref1",
"entity_ids": [
"1.0alpha7.train.290.ent2_0"
]
},
{
"id": "1.0alpha7.train.290.coref2",
"entity_ids": [
"1.0alpha7.train.290.ent3_0",
"1.0alpha7.train.290.ent4_1"
]
}
] |
[
{
"id": "1.0alpha7.train.290.rel0s1.0alpha7.train.290.ent2_0.o1.0alpha7.train.290.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.290.ent2_0",
"arg2_id": "1.0alpha7.train.290.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.290.rel0s1.0alpha7.train.290.ent2_0.o1.0alpha7.train.290.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.290.ent2_0",
"arg2_id": "1.0alpha7.train.290.ent4_1",
"normalized": []
},
{
"id": "1.0alpha7.train.290.rel1s1.0alpha7.train.290.ent0_0.o1.0alpha7.train.290.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.290.ent0_0",
"arg2_id": "1.0alpha7.train.290.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.290.rel1s1.0alpha7.train.290.ent1_1.o1.0alpha7.train.290.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.290.ent1_1",
"arg2_id": "1.0alpha7.train.290.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.291
|
24668077
|
[
{
"id": "1.0alpha7.train.291.sent",
"type": "sentence",
"text": [
" Moreover, the insulin-induced increase in GTP bound Rheb, but not that of Ras, is blocked by wortmannin, whereas both increases are resistant to rapamycin (Figure 2A). "
],
"offsets": [
[
0,
175
]
]
}
] |
[
{
"id": "1.0alpha7.train.291.ent0_0",
"type": "chemical",
"text": [
"wortmannin"
],
"offsets": [
[
97,
107
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "312145"
}
]
},
{
"id": "1.0alpha7.train.291.ent1_0",
"type": "drug",
"text": [
"rapamycin"
],
"offsets": [
[
149,
158
]
],
"normalized": [
{
"db_name": "DrugBank",
"db_id": "DB00877"
}
]
},
{
"id": "1.0alpha7.train.291.ent2_0",
"type": "chemical",
"text": [
"GTP"
],
"offsets": [
[
44,
47
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "135398633"
}
]
},
{
"id": "1.0alpha7.train.291.ent3_0",
"type": "protein",
"text": [
"insulin"
],
"offsets": [
[
15,
22
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3630"
},
{
"db_name": "hgnc",
"db_id": "INS"
},
{
"db_name": "uniprot",
"db_id": "P01308"
}
]
},
{
"id": "1.0alpha7.train.291.ent4_0",
"type": "protein",
"text": [
"Rheb"
],
"offsets": [
[
55,
59
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6009"
},
{
"db_name": "hgnc",
"db_id": "RHEB"
},
{
"db_name": "uniprot",
"db_id": "Q15382"
}
]
},
{
"id": "1.0alpha7.train.291.ent5_0",
"type": "protein-family",
"text": [
"Ras"
],
"offsets": [
[
78,
81
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR020849"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.291.coref0",
"entity_ids": [
"1.0alpha7.train.291.ent0_0"
]
},
{
"id": "1.0alpha7.train.291.coref1",
"entity_ids": [
"1.0alpha7.train.291.ent1_0"
]
},
{
"id": "1.0alpha7.train.291.coref2",
"entity_ids": [
"1.0alpha7.train.291.ent2_0"
]
},
{
"id": "1.0alpha7.train.291.coref3",
"entity_ids": [
"1.0alpha7.train.291.ent3_0"
]
},
{
"id": "1.0alpha7.train.291.coref4",
"entity_ids": [
"1.0alpha7.train.291.ent4_0"
]
},
{
"id": "1.0alpha7.train.291.coref5",
"entity_ids": [
"1.0alpha7.train.291.ent5_0"
]
}
] |
[
{
"id": "1.0alpha7.train.291.rel0s1.0alpha7.train.291.ent2_0.o1.0alpha7.train.291.ent4_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.291.ent2_0",
"arg2_id": "1.0alpha7.train.291.ent4_0",
"normalized": []
},
{
"id": "1.0alpha7.train.291.rel1s1.0alpha7.train.291.ent2_0.o1.0alpha7.train.291.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.291.ent2_0",
"arg2_id": "1.0alpha7.train.291.ent5_0",
"normalized": []
}
] |
1.0alpha7.train.292
|
19076092
|
[
{
"id": "1.0alpha7.train.292.sent",
"type": "sentence",
"text": [
" CtBP binds with HPC2 and XPc through the same conserved amino acid motif, PI/LDL. "
],
"offsets": [
[
0,
86
]
]
}
] |
[
{
"id": "1.0alpha7.train.292.ent0_0",
"type": "protein",
"text": [
"XPc"
],
"offsets": [
[
28,
31
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "7508"
},
{
"db_name": "hgnc",
"db_id": "XPC"
},
{
"db_name": "uniprot",
"db_id": "Q01831"
}
]
},
{
"id": "1.0alpha7.train.292.ent1_0",
"type": "protein",
"text": [
"CtBP"
],
"offsets": [
[
1,
5
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1487"
},
{
"db_name": "hgnc",
"db_id": "CTBP1"
},
{
"db_name": "uniprot",
"db_id": "Q13363"
}
]
},
{
"id": "1.0alpha7.train.292.ent2_0",
"type": "protein-motif",
"text": [
"PI/LDL"
],
"offsets": [
[
77,
83
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.292.ent3_0",
"type": "protein",
"text": [
"HPC2"
],
"offsets": [
[
18,
22
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "60528"
},
{
"db_name": "hgnc",
"db_id": "ELAC2"
},
{
"db_name": "uniprot",
"db_id": "Q9BQ52"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.292.coref0",
"entity_ids": [
"1.0alpha7.train.292.ent0_0"
]
},
{
"id": "1.0alpha7.train.292.coref1",
"entity_ids": [
"1.0alpha7.train.292.ent1_0"
]
},
{
"id": "1.0alpha7.train.292.coref2",
"entity_ids": [
"1.0alpha7.train.292.ent2_0"
]
},
{
"id": "1.0alpha7.train.292.coref3",
"entity_ids": [
"1.0alpha7.train.292.ent3_0"
]
}
] |
[
{
"id": "1.0alpha7.train.292.rel0s1.0alpha7.train.292.ent1_0.o1.0alpha7.train.292.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.292.ent1_0",
"arg2_id": "1.0alpha7.train.292.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.292.rel1s1.0alpha7.train.292.ent0_0.o1.0alpha7.train.292.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.292.ent0_0",
"arg2_id": "1.0alpha7.train.292.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.293
|
2028459
|
[
{
"id": "1.0alpha7.train.293.sent",
"type": "sentence",
"text": [
" Mg2+ inhibited but did not abolish ATPgammaS binding to both synapsin C-domains, similar to its effect on GTP binding to Rab proteins (Fig. 1) ( 25). "
],
"offsets": [
[
0,
156
]
]
}
] |
[
{
"id": "1.0alpha7.train.293.ent0_0",
"type": "protein-domain",
"text": [
"C-domains"
],
"offsets": [
[
72,
81
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.293.ent1_0",
"type": "protein-family",
"text": [
"Rab"
],
"offsets": [
[
125,
128
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR000806"
}
]
},
{
"id": "1.0alpha7.train.293.ent2_0",
"type": "chemical",
"text": [
"GTP"
],
"offsets": [
[
109,
112
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "135398633"
}
]
},
{
"id": "1.0alpha7.train.293.ent3_0",
"type": "chemical",
"text": [
"Mg2+"
],
"offsets": [
[
1,
5
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "5462224"
}
]
},
{
"id": "1.0alpha7.train.293.ent4_0",
"type": "protein-family",
"text": [
"synapsin"
],
"offsets": [
[
63,
71
]
],
"normalized": [
{
"db_name": "interpro",
"db_id": "IPR001359"
}
]
},
{
"id": "1.0alpha7.train.293.ent5_0",
"type": "chemical",
"text": [
"ATPgammaS"
],
"offsets": [
[
36,
45
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "44123300"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.293.coref0",
"entity_ids": [
"1.0alpha7.train.293.ent0_0"
]
},
{
"id": "1.0alpha7.train.293.coref1",
"entity_ids": [
"1.0alpha7.train.293.ent1_0"
]
},
{
"id": "1.0alpha7.train.293.coref2",
"entity_ids": [
"1.0alpha7.train.293.ent2_0"
]
},
{
"id": "1.0alpha7.train.293.coref3",
"entity_ids": [
"1.0alpha7.train.293.ent3_0"
]
},
{
"id": "1.0alpha7.train.293.coref4",
"entity_ids": [
"1.0alpha7.train.293.ent4_0"
]
},
{
"id": "1.0alpha7.train.293.coref5",
"entity_ids": [
"1.0alpha7.train.293.ent5_0"
]
}
] |
[
{
"id": "1.0alpha7.train.293.rel0s1.0alpha7.train.293.ent4_0.o1.0alpha7.train.293.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.293.ent4_0",
"arg2_id": "1.0alpha7.train.293.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.293.rel1s1.0alpha7.train.293.ent1_0.o1.0alpha7.train.293.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.293.ent1_0",
"arg2_id": "1.0alpha7.train.293.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.294
|
15642360
|
[
{
"id": "1.0alpha7.train.294.sent",
"type": "sentence",
"text": [
"We note that CKIɛ, CKI∂, and the kinase domain fragment of CKIɛ bound to mPER1 whereas CKIα2 did not, consistent with the mPER1 interaction taking place via the kinase domain and not via the carboxy-terminal regulatory domain."
],
"offsets": [
[
0,
226
]
]
}
] |
[
{
"id": "1.0alpha7.train.294.ent0_0",
"type": "protein-domain",
"text": [
"kinase domain"
],
"offsets": [
[
33,
46
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.294.ent1_1",
"type": "protein-domain",
"text": [
"kinase domain"
],
"offsets": [
[
161,
174
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.294.ent2_0",
"type": "protein",
"text": [
"CKIα2"
],
"offsets": [
[
87,
92
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1457"
},
{
"db_name": "hgnc",
"db_id": "CSNK2A1"
},
{
"db_name": "uniprot",
"db_id": "P68400"
}
]
},
{
"id": "1.0alpha7.train.294.ent3_0",
"type": "protein",
"text": [
"CKIɛ"
],
"offsets": [
[
13,
17
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1454"
},
{
"db_name": "hgnc",
"db_id": "CSNK1E"
},
{
"db_name": "uniprot",
"db_id": "P49674"
}
]
},
{
"id": "1.0alpha7.train.294.ent4_1",
"type": "protein",
"text": [
"CKIɛ"
],
"offsets": [
[
59,
63
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1454"
},
{
"db_name": "hgnc",
"db_id": "CSNK1E"
},
{
"db_name": "uniprot",
"db_id": "P49674"
}
]
},
{
"id": "1.0alpha7.train.294.ent5_0",
"type": "protein",
"text": [
"CKI∂"
],
"offsets": [
[
19,
23
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "1453"
},
{
"db_name": "hgnc",
"db_id": "CSNK1D"
},
{
"db_name": "uniprot",
"db_id": "P48730"
}
]
},
{
"id": "1.0alpha7.train.294.ent6_0",
"type": "protein",
"text": [
"mPER1"
],
"offsets": [
[
73,
78
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5187"
},
{
"db_name": "hgnc",
"db_id": "PER1"
},
{
"db_name": "uniprot",
"db_id": "O15534"
}
]
},
{
"id": "1.0alpha7.train.294.ent7_1",
"type": "protein",
"text": [
"mPER1"
],
"offsets": [
[
122,
127
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "5187"
},
{
"db_name": "hgnc",
"db_id": "PER1"
},
{
"db_name": "uniprot",
"db_id": "O15534"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.294.coref0",
"entity_ids": [
"1.0alpha7.train.294.ent0_0",
"1.0alpha7.train.294.ent1_1"
]
},
{
"id": "1.0alpha7.train.294.coref1",
"entity_ids": [
"1.0alpha7.train.294.ent2_0"
]
},
{
"id": "1.0alpha7.train.294.coref2",
"entity_ids": [
"1.0alpha7.train.294.ent3_0",
"1.0alpha7.train.294.ent4_1"
]
},
{
"id": "1.0alpha7.train.294.coref3",
"entity_ids": [
"1.0alpha7.train.294.ent5_0"
]
},
{
"id": "1.0alpha7.train.294.coref4",
"entity_ids": [
"1.0alpha7.train.294.ent6_0",
"1.0alpha7.train.294.ent7_1"
]
}
] |
[
{
"id": "1.0alpha7.train.294.rel0s1.0alpha7.train.294.ent0_0.o1.0alpha7.train.294.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.294.ent0_0",
"arg2_id": "1.0alpha7.train.294.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.294.rel0s1.0alpha7.train.294.ent0_0.o1.0alpha7.train.294.ent7_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.294.ent0_0",
"arg2_id": "1.0alpha7.train.294.ent7_1",
"normalized": []
},
{
"id": "1.0alpha7.train.294.rel0s1.0alpha7.train.294.ent1_1.o1.0alpha7.train.294.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.294.ent1_1",
"arg2_id": "1.0alpha7.train.294.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.294.rel0s1.0alpha7.train.294.ent1_1.o1.0alpha7.train.294.ent7_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.294.ent1_1",
"arg2_id": "1.0alpha7.train.294.ent7_1",
"normalized": []
},
{
"id": "1.0alpha7.train.294.rel1s1.0alpha7.train.294.ent3_0.o1.0alpha7.train.294.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.294.ent3_0",
"arg2_id": "1.0alpha7.train.294.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.294.rel1s1.0alpha7.train.294.ent3_0.o1.0alpha7.train.294.ent7_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.294.ent3_0",
"arg2_id": "1.0alpha7.train.294.ent7_1",
"normalized": []
},
{
"id": "1.0alpha7.train.294.rel1s1.0alpha7.train.294.ent4_1.o1.0alpha7.train.294.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.294.ent4_1",
"arg2_id": "1.0alpha7.train.294.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.294.rel1s1.0alpha7.train.294.ent4_1.o1.0alpha7.train.294.ent7_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.294.ent4_1",
"arg2_id": "1.0alpha7.train.294.ent7_1",
"normalized": []
},
{
"id": "1.0alpha7.train.294.rel2s1.0alpha7.train.294.ent5_0.o1.0alpha7.train.294.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.294.ent5_0",
"arg2_id": "1.0alpha7.train.294.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.294.rel2s1.0alpha7.train.294.ent5_0.o1.0alpha7.train.294.ent7_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.294.ent5_0",
"arg2_id": "1.0alpha7.train.294.ent7_1",
"normalized": []
},
{
"id": "1.0alpha7.train.294.rel3s1.0alpha7.train.294.ent2_0.o1.0alpha7.train.294.ent6_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.294.ent2_0",
"arg2_id": "1.0alpha7.train.294.ent6_0",
"normalized": []
},
{
"id": "1.0alpha7.train.294.rel3s1.0alpha7.train.294.ent2_0.o1.0alpha7.train.294.ent7_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.294.ent2_0",
"arg2_id": "1.0alpha7.train.294.ent7_1",
"normalized": []
}
] |
1.0alpha7.train.295
|
5336609
|
[
{
"id": "1.0alpha7.train.295.sent",
"type": "sentence",
"text": [
" Combining GST-Smad-4 with the probe, however, produced two shifted bands, indicating that the Hex BRE binds purified Smad4 but not Smad1. "
],
"offsets": [
[
0,
144
]
]
}
] |
[
{
"id": "1.0alpha7.train.295.ent0_0",
"type": "experiment-tag",
"text": [
"GST"
],
"offsets": [
[
11,
14
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.295.ent1_0",
"type": "protein",
"text": [
"Smad4"
],
"offsets": [
[
121,
126
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4089"
},
{
"db_name": "hgnc",
"db_id": "SMAD4"
},
{
"db_name": "uniprot",
"db_id": "Q13485"
}
]
},
{
"id": "1.0alpha7.train.295.ent2_0",
"type": "protein",
"text": [
"Smad1"
],
"offsets": [
[
136,
141
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4086"
},
{
"db_name": "hgnc",
"db_id": "SMAD1"
},
{
"db_name": "uniprot",
"db_id": "Q15797"
}
]
},
{
"id": "1.0alpha7.train.295.ent3_0",
"type": "protein",
"text": [
"Smad-4"
],
"offsets": [
[
15,
21
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.295.ent4_0",
"type": "experimental-construct",
"text": [
"GST-Smad-4"
],
"offsets": [
[
11,
21
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.295.ent5_0",
"type": "DNA",
"text": [
"Hex BRE"
],
"offsets": [
[
97,
104
]
],
"normalized": []
}
] |
[] |
[
{
"id": "1.0alpha7.train.295.coref0",
"entity_ids": [
"1.0alpha7.train.295.ent0_0"
]
},
{
"id": "1.0alpha7.train.295.coref1",
"entity_ids": [
"1.0alpha7.train.295.ent1_0"
]
},
{
"id": "1.0alpha7.train.295.coref2",
"entity_ids": [
"1.0alpha7.train.295.ent2_0"
]
},
{
"id": "1.0alpha7.train.295.coref3",
"entity_ids": [
"1.0alpha7.train.295.ent3_0"
]
},
{
"id": "1.0alpha7.train.295.coref4",
"entity_ids": [
"1.0alpha7.train.295.ent4_0"
]
},
{
"id": "1.0alpha7.train.295.coref5",
"entity_ids": [
"1.0alpha7.train.295.ent5_0"
]
}
] |
[
{
"id": "1.0alpha7.train.295.rel0s1.0alpha7.train.295.ent1_0.o1.0alpha7.train.295.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.295.ent1_0",
"arg2_id": "1.0alpha7.train.295.ent5_0",
"normalized": []
},
{
"id": "1.0alpha7.train.295.rel1s1.0alpha7.train.295.ent2_0.o1.0alpha7.train.295.ent5_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.295.ent2_0",
"arg2_id": "1.0alpha7.train.295.ent5_0",
"normalized": []
}
] |
1.0alpha7.train.296
|
11772169
|
[
{
"id": "1.0alpha7.train.296.sent",
"type": "sentence",
"text": [
"A third important feature of the mechanism of transcriptional activation is the synergy in binding between Sp1 and Smad2 (and to some extent Smad4)."
],
"offsets": [
[
0,
151
]
]
}
] |
[
{
"id": "1.0alpha7.train.296.ent0_0",
"type": "protein",
"text": [
"Smad4"
],
"offsets": [
[
144,
149
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4089"
},
{
"db_name": "hgnc",
"db_id": "SMAD4"
},
{
"db_name": "uniprot",
"db_id": "Q13485"
}
]
},
{
"id": "1.0alpha7.train.296.ent1_0",
"type": "protein",
"text": [
"Sp1"
],
"offsets": [
[
108,
111
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6667"
},
{
"db_name": "hgnc",
"db_id": "SP1"
},
{
"db_name": "uniprot",
"db_id": "P08047"
}
]
},
{
"id": "1.0alpha7.train.296.ent2_0",
"type": "protein",
"text": [
"Smad2"
],
"offsets": [
[
117,
122
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "4087"
},
{
"db_name": "hgnc",
"db_id": "SMAD2"
},
{
"db_name": "uniprot",
"db_id": "Q15796"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.296.coref0",
"entity_ids": [
"1.0alpha7.train.296.ent0_0"
]
},
{
"id": "1.0alpha7.train.296.coref1",
"entity_ids": [
"1.0alpha7.train.296.ent1_0"
]
},
{
"id": "1.0alpha7.train.296.coref2",
"entity_ids": [
"1.0alpha7.train.296.ent2_0"
]
}
] |
[
{
"id": "1.0alpha7.train.296.rel0s1.0alpha7.train.296.ent1_0.o1.0alpha7.train.296.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.296.ent1_0",
"arg2_id": "1.0alpha7.train.296.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.296.rel1s1.0alpha7.train.296.ent0_0.o1.0alpha7.train.296.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.296.ent0_0",
"arg2_id": "1.0alpha7.train.296.ent1_0",
"normalized": []
}
] |
1.0alpha7.train.297
|
676131
|
[
{
"id": "1.0alpha7.train.297.sent",
"type": "sentence",
"text": [
" There is solid evidence that Mas70p is a component of the mitochondrial receptor machinery for protein import ( 46), and we asked if Mas70p would bind to hsp90. "
],
"offsets": [
[
0,
167
]
]
}
] |
[
{
"id": "1.0alpha7.train.297.ent0_0",
"type": "protein",
"text": [
"Mas70p"
],
"offsets": [
[
31,
37
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P07213"
}
]
},
{
"id": "1.0alpha7.train.297.ent1_1",
"type": "protein",
"text": [
"Mas70p"
],
"offsets": [
[
137,
143
]
],
"normalized": [
{
"db_name": "uniprot",
"db_id": "P07213"
}
]
},
{
"id": "1.0alpha7.train.297.ent2_0",
"type": "protein",
"text": [
"hsp90"
],
"offsets": [
[
159,
164
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "3320"
},
{
"db_name": "hgnc",
"db_id": "HSP90AA1"
},
{
"db_name": "uniprot",
"db_id": "P07900"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.297.coref0",
"entity_ids": [
"1.0alpha7.train.297.ent0_0",
"1.0alpha7.train.297.ent1_1"
]
},
{
"id": "1.0alpha7.train.297.coref1",
"entity_ids": [
"1.0alpha7.train.297.ent2_0"
]
}
] |
[
{
"id": "1.0alpha7.train.297.rel0s1.0alpha7.train.297.ent0_0.o1.0alpha7.train.297.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.297.ent0_0",
"arg2_id": "1.0alpha7.train.297.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.297.rel0s1.0alpha7.train.297.ent1_1.o1.0alpha7.train.297.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.297.ent1_1",
"arg2_id": "1.0alpha7.train.297.ent2_0",
"normalized": []
}
] |
1.0alpha7.train.298
|
933939
|
[
{
"id": "1.0alpha7.train.298.sent",
"type": "sentence",
"text": [
" Previously, assay of the reduction in the EDTA-ATPase activity of S-1 in the supernatant when S-1.MgADP.Pi is cosedimented with actin has been used to measure the weak binding of myosin to actin ( 37). "
],
"offsets": [
[
0,
209
]
]
}
] |
[
{
"id": "1.0alpha7.train.298.ent0_0",
"type": "protein-domain",
"text": [
"S-1"
],
"offsets": [
[
69,
72
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.298.ent1_1",
"type": "protein-domain",
"text": [
"S-1"
],
"offsets": [
[
97,
100
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.298.ent2_0",
"type": "protein-complex",
"text": [
"myosin"
],
"offsets": [
[
184,
190
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.298.ent3_0",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
132,
137
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
},
{
"id": "1.0alpha7.train.298.ent4_1",
"type": "protein-family",
"text": [
"actin"
],
"offsets": [
[
195,
200
]
],
"normalized": [
{
"db_name": "pfam",
"db_id": "PF00022"
}
]
},
{
"id": "1.0alpha7.train.298.ent5_0",
"type": "protein-domain",
"text": [
"S-1.MgADP.Pi"
],
"offsets": [
[
97,
109
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.298.ent6_0",
"type": "protein",
"text": [
"EDTA-ATPase"
],
"offsets": [
[
44,
55
]
],
"normalized": []
},
{
"id": "1.0alpha7.train.298.ent7_0",
"type": "protein-family",
"text": [
"ATPase"
],
"offsets": [
[
49,
55
]
],
"normalized": [
{
"db_name": "intenz",
"db_id": "https://www.ebi.ac.uk/intenz/query?cmd"
}
]
},
{
"id": "1.0alpha7.train.298.ent8_0",
"type": "chemical",
"text": [
"EDTA"
],
"offsets": [
[
44,
48
]
],
"normalized": [
{
"db_name": "pubchem:compound",
"db_id": "6049"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.298.coref0",
"entity_ids": [
"1.0alpha7.train.298.ent0_0",
"1.0alpha7.train.298.ent1_1"
]
},
{
"id": "1.0alpha7.train.298.coref1",
"entity_ids": [
"1.0alpha7.train.298.ent2_0"
]
},
{
"id": "1.0alpha7.train.298.coref2",
"entity_ids": [
"1.0alpha7.train.298.ent3_0",
"1.0alpha7.train.298.ent4_1"
]
},
{
"id": "1.0alpha7.train.298.coref3",
"entity_ids": [
"1.0alpha7.train.298.ent5_0"
]
},
{
"id": "1.0alpha7.train.298.coref4",
"entity_ids": [
"1.0alpha7.train.298.ent6_0"
]
},
{
"id": "1.0alpha7.train.298.coref5",
"entity_ids": [
"1.0alpha7.train.298.ent7_0"
]
},
{
"id": "1.0alpha7.train.298.coref6",
"entity_ids": [
"1.0alpha7.train.298.ent8_0"
]
}
] |
[
{
"id": "1.0alpha7.train.298.rel0s1.0alpha7.train.298.ent7_0.o1.0alpha7.train.298.ent8_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.298.ent7_0",
"arg2_id": "1.0alpha7.train.298.ent8_0",
"normalized": []
},
{
"id": "1.0alpha7.train.298.rel1s1.0alpha7.train.298.ent2_0.o1.0alpha7.train.298.ent3_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.298.ent2_0",
"arg2_id": "1.0alpha7.train.298.ent3_0",
"normalized": []
},
{
"id": "1.0alpha7.train.298.rel1s1.0alpha7.train.298.ent2_0.o1.0alpha7.train.298.ent4_1",
"type": "bind",
"arg1_id": "1.0alpha7.train.298.ent2_0",
"arg2_id": "1.0alpha7.train.298.ent4_1",
"normalized": []
}
] |
1.0alpha7.train.299
|
22277185
|
[
{
"id": "1.0alpha7.train.299.sent",
"type": "sentence",
"text": [
"These results indicate that S14 and UIP1 could bind UCH37 specifically in vitro in a C-terminal extension dependent manner."
],
"offsets": [
[
0,
126
]
]
}
] |
[
{
"id": "1.0alpha7.train.299.ent0_0",
"type": "protein",
"text": [
"UCH37"
],
"offsets": [
[
55,
60
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "51377"
},
{
"db_name": "hgnc",
"db_id": "UCHL5"
},
{
"db_name": "uniprot",
"db_id": "Q9Y5K5"
}
]
},
{
"id": "1.0alpha7.train.299.ent1_0",
"type": "protein",
"text": [
"UIP1"
],
"offsets": [
[
38,
42
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "55559"
},
{
"db_name": "hgnc",
"db_id": "HAUS7"
},
{
"db_name": "uniprot",
"db_id": "Q99871"
}
]
},
{
"id": "1.0alpha7.train.299.ent2_0",
"type": "protein",
"text": [
"S14"
],
"offsets": [
[
29,
32
]
],
"normalized": [
{
"db_name": "NCBI gene",
"db_id": "6208"
},
{
"db_name": "hgnc",
"db_id": "RPS14"
},
{
"db_name": "uniprot",
"db_id": "P62263"
}
]
}
] |
[] |
[
{
"id": "1.0alpha7.train.299.coref0",
"entity_ids": [
"1.0alpha7.train.299.ent0_0"
]
},
{
"id": "1.0alpha7.train.299.coref1",
"entity_ids": [
"1.0alpha7.train.299.ent1_0"
]
},
{
"id": "1.0alpha7.train.299.coref2",
"entity_ids": [
"1.0alpha7.train.299.ent2_0"
]
}
] |
[
{
"id": "1.0alpha7.train.299.rel0s1.0alpha7.train.299.ent0_0.o1.0alpha7.train.299.ent2_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.299.ent0_0",
"arg2_id": "1.0alpha7.train.299.ent2_0",
"normalized": []
},
{
"id": "1.0alpha7.train.299.rel1s1.0alpha7.train.299.ent0_0.o1.0alpha7.train.299.ent1_0",
"type": "bind",
"arg1_id": "1.0alpha7.train.299.ent0_0",
"arg2_id": "1.0alpha7.train.299.ent1_0",
"normalized": []
}
] |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.