metadata

language:
  - en
bigbio_language:
  - English
license: cc-by-3.0
multilinguality: monolingual
bigbio_license_shortname: CC_BY_3p0
pretty_name: OSIRIS
homepage: https://sites.google.com/site/laurafurlongweb/databases-and-tools/corpora/
bigbio_pubmed: true
bigbio_public: true
bigbio_tasks:
  - NAMED_ENTITY_RECOGNITION
  - NAMED_ENTITY_DISAMBIGUATION

Dataset Card for OSIRIS

Dataset Description

Homepage: https://sites.google.com/site/laurafurlongweb/databases-and-tools/corpora/
Pubmed: True
Public: True
Tasks: NER,NED

The OSIRIS corpus is a set of MEDLINE abstracts manually annotated with human variation mentions. The corpus is distributed under the terms of the Creative Commons Attribution License Creative Commons Attribution 3.0 Unported License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited (Furlong et al, BMC Bioinformatics 2008, 9:84).

Citation Information

@ARTICLE{Furlong2008,
  author = {Laura I Furlong and Holger Dach and Martin Hofmann-Apitius and Ferran Sanz},
  title = {OSIRISv1.2: a named entity recognition system for sequence variants
  of genes in biomedical literature.},
  journal = {BMC Bioinformatics},
  year = {2008},
  volume = {9},
  pages = {84},
  doi = {10.1186/1471-2105-9-84},
  pii = {1471-2105-9-84},
  pmid = {18251998},
  timestamp = {2013.01.15},
  url = {http://dx.doi.org/10.1186/1471-2105-9-84}
}