Search is not available for this dataset
id
stringlengths 12
23
| sequence
stringlengths 33
489
| secondary_structure
stringlengths 33
489
|
|---|---|---|
AACY020454584.1_604 | ACUGGUUGCGGCCAGUAUAAAUAGUCUUUAAGCCGCAAGCGUGUCCUGGAGUUAAUCUUCCAGGGCGGUAGCA | ((((........)))).........((..............(((((((((........)))))))))..)).. |
AACY021048934.1_360 | GCUCGGUGCGGCGAGCCUAAAUAGUGCCUUAGGCCGCACGCGUUAUGCAUAGGUGGCA | ((((........))))........((((..............((((()))))..)))) |
AACY021109846.1_859 | GGGGGACGAAGUCGAACUGAACACCUCCAUCGUGGUGUCCCCCGGGCAACGCUUGCAAAAGCGGCUAACGUUCAG | (((((((...............(((........))))))))))......(((((....)))))............ |
AACY021449234.1_672 | AUCUCACAACGUUAAUCGCCUCCUCGUGGCGUGAGAUGGAAACAGCAUAUUUGCAAAUAUGUUGGCUAAGAUUAACAG | (((((((..........(((.......)))))))))).....(((((............))))).............. |
AACY021702793.1_630 | ACAUUUUGUGGUUUUAAGGGUUAAUCCUUAAGGUUGAUAAACCUUGACAAGCCUAUGGGGCUACUAUAGUAUUCUCUUAUUACGGGUAAGAGUAUCAAGCAUAAGCGAAAUUCCGUGCUUAUGUAAUGCUAAGUUAGUGCAGACUUAAAAAUUAGGC | ...........................((((((........))))))...(((((....(((....(((((((.(...............................................).)))))))....)))..............))))) |
AACY022661277.1_934 | ACUGGACUACGCCAGUAUAAAUAGGCAUUAAGCGUAGUGCGUUCCAAUGUUGUGAAACAUCGGAGGUUGUU | ((((........)))).......((((..............((((.((((......)))).))))..)))) |
AACY022753348.1_678 | AGUCGACUAAGCGACUCUAAACAGCAUUUAGGCUUAGUGCGUUCCCCUGCUCACGCGGGGGAGGUAUGG | ((((........))))........(((..............(((((((((....)))))))))..))). |
AACY020454254.1_1909 | AGUCGUUUGGGCGACUAUAAACAGACGAAUAAGCCCAAAGCGUUUCCUCGUAAGAGGAAGGACGGA | ((((........)))).........((...............(((((((....)))))))..)).. |
AACY020454584.1_1474 | ACUCGUCUGAGCGAGUAUAAAUAGGCUUUUGGCUCAGAGCGAUUCCUGGAGCGCUGUUUCCAGGGAUGUAGCA | ((((........))))........(((..............(((((((((........)))))))))..))). |
AACY020496190.1_1503 | AGUCGUCUAAGCGACUCUAAAAAGGCUUUAAGCUUAGAGCGUUCGCCCAUAUUGGGCGAGGUUGUA | ((((........))))........((...............(((((((.....)))))))...)). |
AACY023396520.1_1459 | AGUCGGUAGAGCGACUUUAAAAAGGCAUUAGGCUCUACGCGUUCCAGGAGGAAACUCCUGGAGGUUGUU | ((((........)))).......((((..............(((((((((....)))))))))..)))) |
AACY023459782.1_1089 | UGAUGAGGGGCGGGGGGCCAGAGACCCCCCGUUAAAUCGCCAUGUCAACCGACAUGCUGGUCCCAAGCCCAG | .(((.....((((((...........))))))...)))..................(((..........))) |
AACZ03123677.1_4633 | GACAGGAGGAAACGCAGCGCCAGCAGCAUCUCAUCUACCCUCCUUGACACCUCCUCCCCGUGGCUCCAGCCAGACCCUAGAGGUCAGCCUUGCGGACCAACAGGAGGACUCCCAGCUUUCCCUUUUCAAGAGGUCCCCAGACACCGGCCACCCUCUUCCAGCCCCUGCGGCCAGUGCAAGGAGGCACCAAUGCUCUGAGGCUGUCGCGUGGUGCAGCGUCGAGCAUCCUCGCCGAGGUCCUUUCUGCUGCCUGUCCCGCCUCACCCCGCUCCAUCACACCAGCUGGCCCUCUUUGCUUCCUUUUCCCAGAAUCGUUAAGCCCCGACUCCCACUAGCACCUCGUACCAACCUCGCCCCACCCCAUCCUCCUGCCUUCCCGCGCUCCGGUGUCCCCCGCUGCCAUG | ..((((((((...((((.((.(((((............((((((((.(((..........(((((.(((.........(((((...((((((.(((((...((((((.............)))))).....))))).))).....)))...)))))........))).)))))))))))))))).....((((((.((.((((.(((...))))))).))))))))((((...))))......)))))))))))..........((.(((..........))).))......................((.(((........))).))......((................)).........)))))))).........((..(((......)))..)).... |
AAGJ04114413.1_2461 | AGGGAGGGAGGGGUAUUGGAACCAAACCUCUUAACCAACCGUCGCCCGUCCCAAGUCGGG | .((.....((((((...........))))))...))........(((..........))) |
AAJM01000018.1_9079 | UGUGUUUCACUCCUUUUACAUGUAUUGUAAACCUUCACACUAAUGUGAAGG | .............((((.(((((...................))))))))) |
AAKY01000063.1_80713 | CACUUCAUCUUUCAUCUUUGCACACCCGAAUUCCGCAGGGUUUUUCAAGUACCAGAGGUAGCCGGUUGCCGCGUGACGAAGGGAACAAAUCGACCAAAGAAGCGAGGACGGUCAUGCGAUCUGCCCGGAUUGCACUGAUGCUGACGAUCGUGCUUGCCGGUCCGUAUGCGUCGAACUUCGCGUAUGCGCAGCGCCCCGAGCAGGGCGCAUCGUCGCGCAA | ................((((....(((...((.(((..(((...((...((((...))))...))..)))..)))..)).)))..)))).((.(.....(.(((((..(.((.....((((.((...(....(..(......)..)....)....)).)))).....))...)..).)))).)..(((..(((((........)))))..))).)))... |
AALC02000098.1_4036 | GAGAUCAAAGAAUCACCCUCGGUUGUUGGUUAAAUUAUUAUCUUGUCAAUCAGGAUUUUGGCGAAAUCUAAUGCUGUUAAACACCCGAUAAAUCAAUCAAUUCAAUAGUGAUAAUGGAGAGGAUGAUGAGUAAAAAGAAAGGGUUAACUACCGCA | .........((((.......(..(((((.(.(.......((..((((((........))))))..)).........).)......)))))..)......))))....((.((..(.......)..))..)).........((.....))...... |
AAQB01006145.1_104686 | AGCACCAAAAUCAGUAACCAAGCGAAUGCUAAACUAGCUUGGGGACUACGCUUGGGUGCUCAAAUUGAUUUAACCGCUCGCUAUAAUGCCAAACAUAACAUUAAGAGCAUAACCUAAUCCUCGCUAUGCUUGUGGCCCUGUUUCGAGACAC | ((((((......(((..((((((.............))))))..))).......)))))).........(.......(((..(((..((((.............((((((..(.........)..)))))).))))..)))..)))).... |
AAWL01000017.1_25112 | AUAAUACAACAGGAACAGGCGGCUGCCGCGAGGCAGUGCAGCCGGGCGUUUGCAGCAGAAAGGCUCUGCGGGACCUGC | .........((((.....((.(((((......)))))...))...((....)).(((((.....)))))....)))). |
AAXW01000073.1_3077 | UCUAAAAUCGUGUGAUUUCGGUAUCUCCCAUUGAUAUUGAGUUCUCCUAGAAUACCUCGGUGAUGCGCCGAGGUUUUU | .....................................................((((((((.....)))))))).... |
AAYW02000017.1_89779 | ACAGUACAAACUGAGCAGGCGGUGGGAUGACCACAGGGCCGGGCCACACAGGGUGGCAGCAGAUAAAGAAUGAAUUUAUGAUCUGCGGGACAGUA | .........((((.....((.((((.....))))...))...(((((.....))))).(((((..................)))))....)))). |
ABBG01000012.1_1114 | AAAUGCGCUACGGGGAACGAUAAAAACAGCGCGGGGGUAGCGUUGCUGGCACGCGUUCAGCGUGUCGGCAGCGGUUGUCUGCAUGCACGACGGGGCCAACCACCACAACAAACCAACAUGCAGGCACAUACGCCUAUUCAAUCGACGUUCCGCCGUCCGGCCGGGGGAAGCAGAGGUCAAUGCGGGCGGCGGCGGACGCAUUUUUUAC | (((((((((.((.(...............).)).))....((((((((((((((.....))))))))))))))..((((((((((.......((........))............))))))))))...(((.(.((...)).).)))(((((((.(((.(((.(...............).))).)))))))))))))))))..... |
ABFK02000017.1_466353 | AGCCGUUCGGGCGGCUAUAAACAGACCUCAGGCCCGAAGCGUGGCGGCACCUGCCGCCGGUGGUA | ((((........))))........(((..............(((((((....)))))))..))). |
ABLN01000435.1_3857 | GUCGACUGGUCAGAGGCUUUCUGUACAAGGUCAGACAGUAUCCCACCCGGCCCACUAGUGAAACUGGUUCAAUCCCAGUAUCGCGCACCACGAUUGACCUGCGGUUUCAUCCACAAAAUCUGGGCUGCGUGAACUAAAUGUGAACUGACUCGGUGCAACCACCGAAAGGUUCCU | ((((.(((..((((.....))))..)).).)..))).......(((.(((((((...(((((((((..((((((...((.......))...))))))....)))))))))..........))))))).)))..........(((((...((((((....))))))..))))).. |
ABLX01143204.1_55 | ACUCGACAGGGCGAGGCUAAAUAGCAUUUAGGCCCUGAGCGGCUCCCUUCGGGAG | .(((........)))...........................(((((...))))) |
ABLZ01250225.1_97 | AGUCGUUAGGGCGACUAUAAACAGACAUUAAGCCCUAAGCGUCCCCUACUAGCUAGGGGGGUUGUA | ((((........))))........(((..............(((((((.....)))))))..))). |
ABMG01007509.1_2 | GGUGAGCGGCCCCGCCCGUAAGGACGGGGACUAAACCACAAGUCCGGUCGCAAGUCCGG | (((.....((((((..........))))).)...)))......(((..........))) |
ABNK01016853.1_25 | AGUCGUCUGAGCGACUAUAAACAGAGUUUUAGGCUCAGAGCGCCUCCCCUUCGGGGGAGGGUACUA | ((((........))))........(((...............(((((((....)))))))..))). |
ABPA01000012.1_259180 | ACACUCGACCAGAUUUUUUUGAUUUUCGAUUUCCAAACGCGAUUUAUUCCAAUCCGCCUUGUAGCAGACUAACCGGUGCACUUUUGCACGUGUACGCAAGAC | ....((((..(((((.....))))))))).........(((...........((.((......)).)).......(((((....))))).....)))..... |
ABPY01006745.1_33 | ACAGGUUUGCGCCUGUAUAAAUAGACAUUAAGCGCAAAGCGUCCCGCAAUUGUUGCGGGGGUUGUA | ((((........))))........(((..............(((((((.....)))))))..))). |
ABPY01006745.1_722 | GCUGGUCACGGCCAGUAUAAACAGACAUUAAGCCGUGAGCGUCUCCUGUUCUGUGAACGGGAGGGUUGUA | ((((........))))........(((..............(((((((((.....)))))))))..))). |
ABQR01000046.1_117420 | ACAGUACAAUCUGAUCAGGCCUUAAAGUGGAUGGAACGGAACAUCCAUGGAGGAGCCGGGCCGCUUUAGCGGCAGCAGGUAGGAAACACCUGCGGGACAGUC | ..........(((.....((.((.(......................).))...))...(((((....))))).(((((.........)))))....))).. |
ABSH01000027.1_84172 | CAUCGCGAUGCUCUUCAGAGAUGGAGAAAUCGUGAUGAGGAUACUUUCAAAGCCCCAACUGAAGGAGUUGGUUUUGUACUCGCCGCAACAUGUCGCACGUCUGGAAAAGGCAGGCCUAUUCCCCAAGCGGGUACAGCUGGGCCCGAACAGAGUGGGAUGGGUCGAAGAUGAAGUGCUGGACUGGCUACAAACACGGAUGGAGGGUCGCGAGGAGGCCUGACCGACACUCCUCAUGUAGGAGUAUGGGUGGCCGGAGGUGCACACUUC | (((((((((..((((((....)))))).))))))))).................(((.((...(.(((((((((..(((((((..(.((.((((.(((..(((.....(((.(((.....(((.....)))....)))..)))....))).))).)))).)).)..).)).))))..))))))))).)......)).)))..((((((............(((...(((((.....)))))..))))))))).(((.......))). |
ABSK01000052.1_27956 | AUUGCGAGGACUUUAGCAAUGUAGGGGAUGAGCGGCAAAUUCAGGAUCAACAACACAAGGUUGCCGAUGAACAUCGACAUAAUGACCGCCCAGAAAAUCUGUGGAUCGUCAAUCAUCAGGCGUGGGCC | ..(((.((....)).))).......((.(.(.((.(..((..(.((((.(((........(((........(((.......)))......)))......))).)))).)..)).....).))).).)) |
ABSN01019877.1_251 | CGCAGAUGACGGUGCCACCACGGCACCGUAAUGCGACAAGCAGGUUCCAAUCCCUG | ((((.....((((((.......))))))...)))).....(((..........))) |
ABVR01000037.1_34959 | GCUGCUCGAAUGAAUCACACACCUCUUUGUGGUGAGUAGCAGGCAACGAUCUAAGAAUCAGGGAUCCGGUGAUCGGCUGAGAUGUGAAG | (((((((.............(((.......))))))))))......(((((...................))))).............. |
ABYA01000314.1_2329 | AGUUCCGGUGCGGUCGGCGCCUUUCCCAAGAAACGCGAGAGGGAAAUGACCCCCCACCGAACCCACCCUUUCCCGCCCGGGACCUGCGCUCACUCGGGCGGGUGGACAUCACCGCUCGGCCGGCUUUUCGGGUGCCCCGCGGCUUUACGCUCAGCGCACACCACCGCAGAAAAGACUUCGGCCCCCGCCGGGACUGGCAUCCCAGUGCGAGGGCCUGACCACCAAGGAAGACGAGACCUUCCCG | ......((((.....((((......................................................))))............((((((....))))))...............(.(............................).).........................(((((.(((.((((......))))...))).)))))....))))..(((((.......))))).. |
ABYI02000012.1_66005 | GCGGUACAAACUGAGCAGGCGAUGGAUCUUGUGUGAUCAGGUCCGUGGGGCCGGGCCGUUUUCGGCAGCGGAUGCAUGGCAUCCGCGGGACAGUA | .........((((.....((.(((((...............)))))...))...((((....)))).(((((.........)))))....)))). |
AB546780.1_10221 | AUCUUAAAUAGAAAGAGGGUUUGCAUAUGGACUUCACUGGUGUUAUUACAAGCAUUAUUGAUUUAAUCAAGACUUGCAUUCAGACUUUCGGUUAAGUUUUUUGUUUCAACGCAAUAAAAAAACAGAGGAAAUAUUCAACAAUUUGAUUGUUUC | ......(((.(((((...(..((((....((.((((.(((((((......))))))).)))...).))......))))..)...))))).)))..................................((((((.((((....)))).)))))) |
ACCA01000039.1_31556 | CGCCAUAUCAGUGAUAUGGUUGUUGUGUUAGAUAUUGUUAUAAUGAUCCGGAUGAUUUUUAUGAAAAAGACAUUAUUGGCCAGUUCUUUG | .(((((.........)))))..........((((.((((((((.((((.....)))).))))))......)).))))............. |
ACCB01000005.1_85822 | CUAUCUGAGUCUGGGGCCAAUAGGUUUGCAGCAAUGCUCUGGUCGCCGUAAUACCGGCCUUUAAUGACUAUUAAUACAGACCUGAUAAUCAUAUUCACUGAUGACGUCAAAAGGGUUCUUAUGACACAACAGCCGCAAGUCAAAUACCGU | ...((((.((..(((((.....(((...................))).........))))..........)..)).)))).................(((.((..((((...((....)).)))).)).))).................. |
ACCC01000032.1_17493 | AACCUAAUGUUGGUUAAUGCUACAUCAACUAGGUAGACACAAUCCUUUGGAGUAGAACAUGAGCGAUAAAAUUAUUCAUCUGAGUGAC | .......(((((.(((...((((.(((...(((..........))).))).))))....))).)))))...((((((....)))))). |
ACCJ01000536.1_4231 | CGCAGAGCAACGGGGCAGCAAUGCCCCGGUAAUGCGGGGGAACGGUUGCAACCCCGU | ((((......(((((........)))))....)))).....(((..........))) |
ACCJ01000322.1_14085 | AUGGCAUAAAGGAAACAGGCCGCGGGCGGCAGCGCGCGGGCCGGGCCGCAUUAGCGGCAGCAGGUGGAUCAGGCGGCAUCUGCGGGACAAUG | .........(........((((((.(......).))).)))...(((((....))))).(((((..............))))).......). |
ACCL02000009.1_43428 | ACAGUACAAACUGAGCAGACCGUAACAGUCCGUUAUGGAGUCGGGUCACAUGCGUGACAGUGGAAAUGUUCAUCCACGGGACAGUU | .........((((.....((.(((((.....)))))...))...(((((....))))).(((((........)))))....)))). |
ACEY01000129.1_49787 | GGUUCCGGUGCCGUCGGUGCCCUACCAAGACAAGAAACCGGGGGAAAUGACCCCUACCAAGCCCCACCCCUCCCGCCCGAGGCGCUUCGUCACUCGGGCGGGUGAACAUCACCGUUUGAGCUGGAUUUCGGGGCCCUCAACUCCCCUACUCUCAGCGCAAACAAACACAUCUGAAAAGGCAUCGGCCCCCGCUGGGACUGGCAUCCCGGUGCGAGGGCCUAACCACCAAGGAAGAAGAGAGCUUCCCG | ......((((.....((((......................................................))))............((((((....))))))..............(((((...........................)))))...........................(((((.(((.((((......))))...))).)))))....))))..(((((.......))))).. |
ACEZ01000164.1_104333 | CGCUCCGGUGCCGUCGGCGACUGAAAGGCGAAGAACCCCCGAGGGAAAGAACCCCUGCCAAGCCCCACCCCUCCCGCCCGCGUCCCGUGCUCACUCGCGCGGGUGAACCUCCCCGGACCGGCUGGAUUUCGCGGCCCUCGAGGCCCGACGCUCAGCCCAACGCACCACCACAACCGCAGACAUGCGACGGCCCCCGCCGGGACGGCAAUCCCAGUGCGAGGGCCUGACCACCGAGGAAGAUAGAGGCUUCCCG | ......((((.....((((.......................................................))))............((((((....))))))..............(.(((..........................)))......)...........................(((((.(((.((((......))))...))).)))))....))))..(((((.......))))).. |
ACFP01000103.1_1040 | UUUGCCUCAAACACAAAGGUGUCAUCCCAGUGCUUGACACUGGGAUCCAGUAAAAUUGAUUGUGAACAAGCACACUAUACAACAUUUUCAAUGAAAUUACAAAAAAGCUGGAUUCCAGUGUCAAGCACUGGAAUGACACCAUUUGCUGUGCAAUUU | ...........((((....((((((.((((((((((((((((((((((((.........................................................)))))))))))))))))))))))).))))))........))))...... |
ACIE02000035.1_129003 | ACAGUACAGACUGAUCAGGUCAUAAGACCGGGCUGUUAAAAAAACAGCAGCAGAUGAAAUUAACAGCAUCUGUGGGACAAGUG | .........((((.....(((....)))...(((((.......))))).(((((..............)))))....)).)). |
ACII01000060.1_3924 | GCUGCUCAGAAAUGCACACUGCGACUGGUGAGCAGUAGGUGAUGUUUAUCAAAGGAUAAGCGGCUAAGAUGUAGAA | (((((((..........(((......))))))))))......(((((..........))))).............. |
ACII01000103.1_12160 | ACAGUACAAACUGAGCAGGCGAUGCCCGAGAUGCUUGAGGGCGUGGGGCCGGGCCGCGCGAAGCGGCAGCAGAUAUGAAAAUUUUCAGACAUAUCUGUGGGACAGUG | .........((((.....((.(((((.............)))))...))...(((((.....))))).(((((....................)))))....)))). |
ACIO01000756.1_6332 | ACAGUACAAACUGAGCAGGCAAUGUCUGAUCAUGCGACAUGAAGCCGGGCCGCUUCGGCGGCAGCAGAUGGGUAUCAGGCGCAUCUGUGGGACAGUA | .........((((.....((.(((((.........)))))...))...(((((....))))).(((((...............)))))....)))). |
ACTP01000040.1_119838 | ACAGUACAAACUGAGCAGGCUGUGUUUUCUGCCGGCGUAUGUAUUUCAAGCCGGAAAGGAUCCAUGGAUAGCCGGGCCGUUUUGACGGCAGCAGAUGGAGCUUACAUCUGUGGGACAGUA | .........((((.....(((.(((......................................)))...)))...(((((....))))).(((((...........)))))....)))). |
ACUL01000219.1_9374 | ACGGGUUUACCCCCGAAUCGAGCCUUGUGGUCUGUCCAGGCAUCAUUUAUAUGAGCCGCUCGAAUAACACUAAACUAAAAUCCAGGGUAAAC | ....((((((((.....((((((....(((.....)))(((.((........))))))))))).....................)))))))) |
ACUP01006700.1_43239 | GAAUUCUCUAAAAGAGAUCUUUUUCUGCUCUUUGAAGAAAGAAGGGUCUUUGCUUGAUUUUGGAGAUGUCUCUGCUCUCAGAUCU | ....((((((((((((((((((((((.........))))..))))))))).......)))))))))....((((....))))... |
ACWC01000004.1_40409 | AGUCGUGGCGGCGACGUUAAAUAGGCAUUAAGCCGCCAGCGUUCCCCUCAUUGGGGAGGUUGCA | .(((........))).........(((..............((((((.....))))))..))). |
ACXX02000003.1_385221 | AAACUAUAAUUUAGAGCAGGCGAUGCAGCUGUAGACCUUUUAAGACAGUUGUGUGGGGCUGGGCCGAAACGGCAACAGGAUAUAAACCUGUGGGACUAAG | .........(.(((.....((.(((((......................)))))...))...((((...)))).(((((.......)))))....)))). |
ACYV01000002.1_98152 | UCGAUUUUAAGAUAACUUUACGUGGAUGGCUUUCUGCGUUUAUUUAUUAUUUAUAUAUCUUCAAAGUAGAACGCAAUG | ((.(((((((((((.....(((((((......)))))))................)))))).))))).))........ |
ACYY01000023.1_29669 | GUUUCUUGCUGAACCCCACCUCCUCCCGGGGUUUCUGGCAAACGCGGCGGCACUGAUCCUCCUCCCCAGUGCCGCCGCAGCUU | ......((..(((((((..........))))))).)).......((((((((((.............))))))))))...... |
ACZG01000001.1_1182032 | UUUGAUUUGCCCCACCAUUUCGAGCCUUGCAGCACAAGCUGGAUAUCCUUUUUGAGUGAAUCGCUCGACUAACACUAAACCAAAGAUAGGGCAAAU | ....((((((((.......((((((....((((....))))(((.((..........)))))))))))....................)))))))) |
ACZG01000001.1_1258665 | AUUGAUUUGCCCCCAAACAGAGCCUAGUGGCGCAAGCCUGGUAUCACUUUUGAGUGAACCGCUCGAUCAACACUAAACAAAAUCAGGGCAAGU | ....((((((((.......((((.....(((....))).(((.((..........))))))))).....................)))))))) |
AC018761.6_48391 | GGCCUCAAGUGAUGGAGAGCAAUACCCGGGGAUGACUGUGACCACAUUGGGAUGUAUUCGUACUGUCUGAUGGGGCC | (((((((...(((((...(((((((((.((..((........))..)).))..))))).)).)))))...))))))) |
AC069351.5_37957 | AGCUGAAGAGCUGAUGAUGUUCCCCUAAAGCUGAAGCUCUUAAGCU | ((((.(((((((......................))))))).)))) |
ADAV01000062.1_11136 | GAGGACAGAAGUUUCUCGCAAUUAAAAUUUAUCAGUUUUACUUUCUGCUCUCUGGAAACGCCUGCUUCUUUUUUCCCCGAGAGCAUUUUUUCGCAUUCCGAUUUGGUUAACUUUGUUUUUUGAGUACCUUGUCCAGUUAGUAGGAGUGCCACCUUCCUUUUCAAUAGUGGCGGUAAUUUU | .(((((.(((((((..........)))))..)).)))))..((((((((..(((((......((((.(((........)))))))....((((....(.((..........)).).....)))).......)))))..))))))))((((((..............))))))........ |
ADCZ01000007.1_276193 | AUUCGACUAGACGAGUAUAAAUAGGUGUCAGGUCUAGUGCGGCAGGGUUCUUCCCUGCAUCAUA | ((((........))))........(((..............((((((.....))))))..))). |
ADCZ01000007.1_277655 | AAUCGACUAGGCGAUUUUAAAUAGGUGUUAAGCCUAGUGCGGUAAGAGGUAUAACCCUCUUGCGUCACG | ((((........))))........(((..............((((((((......))))))))..))). |
ADDF011338994.1_3988 | UGGGCAUGUGAUGUGACCUUCCUGAGCCUGCAUUCCCUCACCUGGAAAUGAUGAGCAGUUACUGAUGCCACA | ..(((((.....(((((.....((..(.(.((((.((......)).))))).)..)))))))..)))))... |
ADDX01000036.1_19553 | GCGCCCCAUACGGAACAGGCCGUAAAGGAGCCGGGCCGCUGCGGCGGCAGCAGAUGGUGAGGCAUCUGUGGGACAAAA | ((...........................))...(((((....))))).(((((..........)))))......... |
ADFP01000095.1_5329 | ACGGCACAAACUGAACAGGCCGUCCCCUCGGGGAGCGGGCCGGGCCGCCGCGGCGCGGCAGCGGACGACGAUCCGCGGGACGGAA | ..........(((.....(((.((((....))))...)))...(((((......))))).(((((......)))))....))).. |
ADGC01006520.1_5852 | UAACUUUGAACUGAGCAGGCAAUGCAGCGCAUGAGGCCGGGCCCGAGAGGCAGCAGAUUGAAACAACAAACAUCUGCGGGACAGUA | .........((((.....((.((((...))))...))...(((.....))).(((((...............)))))....)))). |
ADGO01024387.1_128 | AGUGAGGGGAUCGAUCUAAACUACUGGCUUGUUUCGUGCAAGUCACCGGUCCCAAGUCCGG | (((.....((....))...))).......................(((..........))) |
ADGO01160766.1_269 | CGCAGAGGGCAGCCCUUCGGGGCUGUAAUGCACUCCCCACCUGGGGAGCGGUCCCAAGUCCGC | .(((.....((((((....))))))...)))................(((..........))) |
ADGO01161384.1_289 | CGCAGAGCACGCCCUACGGGGCGUAAUGCGGCCUCACCACUGGGGUGAGCCAGUUGCAAGCCUGG | ((((.....(((((....)))))...))))...................(((..........))) |
ADJS01012726.1_612 | GAGCAACUUAGGAUUUUAGGCUCCACCGCGGCUUGCUGCGGUGCAAACCCCGCAAGCCUGGCGGUCUUGCGCGCGGUCAAAAUCUAUCCGCCGGAG | ..........(((((((......(((((((((..)))))))))...(((.((((((.........))))))...))).)))))))........... |
ADJS01001306.1_1758 | ACAGUACAAACUGAACAGGCCGGAUAUCUUAUCUGGGGCCGGGUCACAACGUGACAGUGGAAUGAAUUGUUUUAUCCGCGGGACAGUA | .........((((.....((((((((...)))))..)))...(((((...))))).(((((.............)))))....)))). |
ADJS01006913.1_2727 | GCAGUACAAACUGAUCAGGCUACAUUCAUUUUCAAAAAGAUGAUGUUAAGAAAAUGGUGUGCAUGCCGGGCCGGUCAAUUACCGGCAGCAGAUGAGACGAUGAUUCAUACAUCUGUGGGACAGUA | .........((((.....((.(((((.............................)))))....))...(((((.......))))).(((((...................)))))....)))). |
ADJT01005907.1_1108 | UCCGCUCGAAACUUUGCACACCUCUACGCGGUGGGCGGCAGGCAACACAGUGUGUAGAUGCUGUGGCAAAGAAUGCAAGA | .((((((............(((.......))))))))).......(((((..........)))))............... |
ADJT01006171.1_2802 | CCGGAUAUUUUGGCAGGGCUGCACCGGGCAAAGCAACCCCGCCCCAUCUUCCC | ............(..(((.(((..........))).)))..)........... |
ADJT01008886.1_61472 | UGCAGAGUGAGAAAGCUCAUUACCGUUUGGUGAUGGGCUUUUGUAAUGCAGAGCGCCGGUCACAAUCCCGG | .(((......(((((......................)))))....)))......(((..........))) |
ADLR01000090.1_3100 | AUAUGAUACAGUGAGCAGGCGACGGCCGAAAUGAGAAUCGUCGCCGGGCUGCCGAAAGGCGGCAGCAGACUGUGUGACAGCACAUCUGCGGGACAGUU | .........(.((.....(((((((............)))))))...(((((......))))).(((((...............)))))....)).). |
ADTP01000150.1_17338 | AACCUUUAGUUGGUUAAUGUUACACCAACAACGAAACCAACACGCCAGGCUUAUUCCUGUGGAGUUAAAUAUGAGCGAUAAAAUUAUUCACCUGACUGAC | ........((((.(((...(.((.(((...(.(......................).).))).)).)....))).))))....(((.((....)).))). |
ADUU01000026.1_72568 | UUUUUACGCCUCAAACUUUCGUUUUCGGGUCAUUUCGUCCAGACUUAAGUUCACAACACCUCACC | .............(((((..((((..(((.(.....))))))))..))))).............. |
AECF01000037.1_53384 | UGGGGUCAACUUUGGUACGGAAGCAGAUCGAAAAAUAGCUACUUUGUUAUUUGUCGUUGCUCUAAAAAGUCAACGGCAACUAAGCAUGCUUCAAGAAUUAGCUUUUUUCUGUUCAGAUCUCGAAAACAUUCAGCGGCUCAGUGAUUGUCGAACAAUAGAUGAAGCGCAAAAAAUUCUGGCUCAAGCCUAAAGUUACGUCUGAAAAAAUCAAUUCAAUUUGAAAUGUUCAAUAAUUAUUGAAAUAAUUUUAUAUUAAAAAAUAAAAUAUUUUAAUUUAAGAGAUCAAACAAAAAAGAUAAGAAGAUUCCUUGACAAAAAAUAGGCCCUAUGAUAAAUUUAAGGUAACUUGUGACAAAGUCGUGCAUGGAUGCACUAAAAAGACACCCUAUCAGUAGUAGGGUGUCUUUUUUUGC | ...((((..((((......))))..))))...........((((((((((.....((((((.((((..((((..(((..(((........(((((((((..(((((((.((((..(((((.(((.............(((((((((((.(((((.((((((.(((............(((....)))....))).))))))......((((......))))..))))).)))))))))))....(((((((........))))))).......))).)..)))).)))).))))...)))..)))).))))).......))))))...))))...)))).))))))..)))))))))).(((((....))))).(((((((((((((((.....))))))))))))))).... |
AECU01000025.1_4723 | GCUGUCCGAAAAUGCUGCCUCUACGUGGCGGACGGCAGGCAACGGAGCGUGUCUCCGGCUAAAGCAUGA | (((((((.........(((.......))))))))))......(((((.....)))))............ |
AEDB01000020.1_61018 | ACAGUACAAACUGAUCAGGCGAUAAACCCCAAAUUUUAAGGUUUAUGCAGCUGGGCCAUAAACGGCAGCAGAUGAAAAAUAUAACACAUCUGUGGGACAGUG | .........((((.....((.(((((...............)))))...))...(((.(..).))).(((((................)))))....)))). |
AEDB01000024.1_46397 | AAUAUAAAAAUAGAGCAGGCGAUACACCUAAUAAGGUGUGUGGGGCUGGGCCGACGAAAGUUGGCAACAGGUGAAAAAUACCUGUGGGACUAUA | .........((((.....((.(((((..........)))))...))...(((((......))))).(((((.........)))))....)))). |
AEDB01000052.1_16213 | ACAGUACAAUCUGAUCAGGCGAUGAAUGCGAAUUCAUGGUGCCGGGCUGCUUCAAAUAGCGGCAGUGGGUGAGUGAUACACACAUCUACGGGACAGUA | ..........(((.....((((((((......)))))..)))...(((((........))))).(((((...............)))))....))).. |
AEJN01000022.1_11402 | CAAGUACUAAAUUUUUUACUUGAAUUAUUGACAUAAAAUAACUGCUUAUAAACCAAGAAGAAUUUUUUGCGUGGUAAAAAUCGCAUUAUUAAAAAUUUGUGUAAAGGGACAAAUUUU | ...(((..((((((((..((((..((((...((.........))...))))..))))))))))))..)))(((((....))))).......(((((((((........))))))))) |
AENG01000001.1_255918 | CAUAAAUAUCUUGUAUAUUUAUAAUAUUGGCAGUGUAGUUCUUGCUGGCUCUGGGUGACGAGAGAUCUCGAAAUCAAGAGAUUGAACCAAAAAAACAACUCUUUUUAUAAGAGUUGUUUUUUUA | .((((((((.....))))))))...............((((..........((((...........)))).............)))).(((((..((((((((.....)))))))))))))... |
AENI01006267.1_25045 | UUUAUUUUUAGCCUUGUGAUGAUGAUAGUAUAUCUUCGAGUGGUGCCGCUUGUUUGUUUUUUGCCGAGACCCAUCAUCUCCA | .................((((((((.(.....).)..(((((....)))))(.((.(........).)).)))))))).... |
AERA01001428.1_285 | ACUCGUUAGGGCGAGUAUAAAUAGCCAUUAGGCCCUAAGCGUCAAUGAUAAGCUCAUUGGGUUGGA | ((((........))))........(((..............(((((((.....)))))))..))). |
AEUX02000007.1_442608 | AAGUCUGUUUCAGAAAACAGAAACCCAGGUCAAGUAAGUGUUCUCACUUACAAUAACACAGUUAAUGAUGGGGCAACUCAAAGUUAA | ...(((((((....)))))))............((((((......))))))..........(((((..((((....))))..))))) |
AEVN01000015.1_26987 | ACAGUACAAACUGAUCAGGCGGUAAACCUUCUUCCGGGUUUUUGCAGCCGGGCCCUCUGGGCAGCAGACCUUGACGCAACGUCUGCGGGACAGUU | .........((((.....((.(.(((............))).)...))...((((...)))).(((((.............)))))....)))). |
AEXQ01000083.1_43353 | ACAGUACAAACUGAACAGGCAGCGACUAAGUCGUGUGGCCGGGUUGCUUAGCAACAGCAGAUUUAAUUAUUCAUAUUGAUGAUAAUUAACAUCUGUGGGACAGUA | .........((((.....((.(((((...)))))...))...(((((...))))).(((((..............................)))))....)))). |
AE004437.1_34775 | ACGUAUCUCCGAGUCCCGUCACGGAUGGCGGUGAUAGGAGUAACGGCUGGUUGGCACAGCCAUCGACGUUCCUGUUUGACAAUGAAACUGGUGCGUUCGCACCUCAAGAACAGGCUACGUCGUAAACCAUAAUAUCCCAACGCGGUCGGGAAUCCUCGCCCUUCAGGGCGGGGA | ..((..((((..(((((((((....)))))).))).))))..))(((((.......)))))..((((((.(((((((............(((((....)))))....)))))))..))))))............((((.((...)).)))).(((((((((....))))))))) |
AE016831.1_55455 | GGCAACUUGCCUCCGAUUGGGGGUGCUGUUUAUGUACGAACUUAUGUCUUUGGUUAUUGCCCCACUUUUUGUGGGUCUAGUAAUCUUACUAGUUGACCAUUGGUUAGAUGAUUAGCAGAUAACCAUGCAAGUUGUCCUAGCCCACACGUCUAUCCGCAAGACGAAAAA | ((((((((..((((....))))((((.......)))).............(((((((((((((((.....))))).((((((....))))))((((((...)))))).......))).)))))))...))))))))..........(((((.......)))))..... |
AE016833.1_63483 | GCGAAACGACAUUAAAUCGUACAGAUAACACAAAAAGCAAUCCUACGGCGAAUAGGAUUGCUUU | .....((((.......)))).............((((((((((((.......)))))))))))) |
AE004091.2_182693 | CGUCGCCGUAGCAACGCCGGGCAUACCCUGCCCGGCGUCGGGGCGGAUGGCCCACCCGCCGUCCGCUCUCCUUCCCCCCGCACAGACUCUGCUACGGCGGCGCCCCCUUCCCCUUACGCCGCGC | ..(((.((......)).).))..........(.......((((((((((((......))))))))).))).......((((..(........)...)))).................)...... |
AE004439.1_147426 | ACAUCUGUUAGAGAUAAAGGUGGGAAUGAUAGAGUAGAUCGUUUUCAGUCUGAGUCAUACUCCAAACAGGUAGAGUAGAAAGUAAAUUCGUUAGGGUAUUUAUGGGCUGAAGGUUUAAACUUCAGCCUUUUUU | ..((((((......................................(((.((...)).)))....))))))..............((((....))))....(.(((((((((.......)))))))))...). |
AE004439.1_841385 | UAAUUGGCUCGAGCAGUUGCUAUUUUUUUAUUGUCGAACAAUAAUAGUAUUUGAACCCUCGAGAGUAAAUCCUUUUCUC | ........(((((.(..(((((((..((...........)).)))))))..).....)))))(((......)))..... |
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bpRNA-new
bpRNA-new is a database of single molecule secondary structures annotated using bpRNA.
bpRNA-new is a dataset of RNA families from Rfam 14.2, designed for cross-family validation to assess generalization capability. It focuses on families distinct from those in bpRNA-1m, providing a robust benchmark for evaluating model performance on unseen RNA families.
Disclaimer
This is an UNOFFICIAL release of the bpRNA-new by Kengo Sato, et al.
The team releasing bpRNA-new did not write this dataset card for this dataset so this dataset card has been written by the MultiMolecule team.
Related Datasets
- bpRNA-1m: A database of single molecule secondary structures annotated using bpRNA.
- bpRNA-spot: A subset of bpRNA-1m that applies CD-HIT (CD-HIT-EST) to remove sequences with more than 80% sequence similarity from bpRNA-1m.
- ArchiveII: A database of RNA secondary with the same families as RNAStrAlign, usually used for testing.
License
This dataset is licensed under the AGPL-3.0 License.
SPDX-License-Identifier: AGPL-3.0-or-later
Citation
@article{sato2021rna,
author = {Sato, Kengo and Akiyama, Manato and Sakakibara, Yasubumi},
journal = {Nature Communications},
month = feb,
number = 1,
pages = {941},
publisher = {Springer Science and Business Media LLC},
title = {{RNA} secondary structure prediction using deep learning with thermodynamic integration},
volume = 12,
year = 2021
}
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