Search is not available for this dataset
name
stringlengths
18
62
sequence
stringlengths
1
300
reactivity
sequencelengths
1
300
seqpos
sequencelengths
1
300
class
stringclasses
5 values
dataset
stringclasses
23 values
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE
UACCAUAUUAGGACGUAUAGUUAGUCCUAGGUGUGAAUAUCAAGCAGGACAUAACAAGGUAGGAUCUCUACAGUACUUGGCACUAGCAGCAUUAAUAAAACCAAAACAGAUAAAGCCACCUUUGCCUAGUGUUAGGAAACUGACAGAGGACAGAUGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCAUACAAUGAAUGGACACUAGAGCUUUUAGAGGAACUUAAGAGUGAAGCUGUUAGACAUUUUCCUAGGAUAUGGCUCCAUAACUUAGGACAACAUAUCUAUGAAACU
[ 0.2, 0.1, 0, 0, 0.51, 0.42, 2.7, 1, 0.2, 0, 0.02, 0.03, 0.05, 0.07, 0.63, 0.44, 1.04, 0.43, 0.9400000000000001, 0.79, 0.5, 0.43, 1.29, 0, 0.01, 0.02, 0.01, 0, 0.03, 0.05, 0.56, 0.18, 0.05, 0.05, 0.16, 0.1, 0.30000000000000004, 0.43, 0.52, 0.23, 0.54, 0.43, 0.26, 0.8300000000000001, 0.37, 0.13, 0.03, 0.18, 0.21, 0.44, 0.54, 0.13, 0.9400000000000001, 0.41000000000000003, 0.8, 0.62, 0.09, 0.75, 0.68, 0.52, 0.49, 0.39, 0.67, 0.44, 0.17, 0.24, 0.08, 0.14, 0.05, 0.07, 0.25, 0.52, 0.15, 0.64, 0.62, 0.53, 0.55, 0.04, 0.09, 0.02, 0, 0, 0.01, 0.06, 0.04, 0.1, 0.35000000000000003, 0.81, 0.25, 0.63, 0.4, 0.15, 0.43, 0.26, 0.34, 0.7000000000000001, 0.56, 0.34, 0.74, 1.11, 0.62, 0.85, 0.6900000000000001, 0.32, 0.31, 0.6900000000000001, 0.8200000000000001, 1.37, 0.25, 0.89, 0.56, 1.17, 0.37, 0.56, 0.53, 1.4, 0.19, 0.26, 0.32, 0.98, 0.41000000000000003, 0.19, 0.02, 0.14, 0.16, 0.85, 0.9400000000000001, 0.17, 0.31, 0.5, 0.6000000000000001, 0.5, 0.05, 0.13, 0.65, 0.77, 0.27, 0.01, 0.32, 0.28, 0.48, 0.03, 0.06, 0.4, 0.21, 0, 0.14, 0.35000000000000003, 0, 0.81, 0.53, 0.8, 0.29, 0.31, 0.27, 0.42, 0.64, 0, 0.85, 0.91, 0.23, 0.17, 0.08, 0, 0.03, 0.5700000000000001, 0.51, 0.46, 0.76, 0.8300000000000001, 0.59, 0.46, 0, 0, 0.56, 1.23, 0.4, 0.21, 0.01, 0.08, 0.12, 0.5, 0, 0.81, 0.6900000000000001, 0.29, 0.61, 0.08, 0.78, 1.08, 0.17, 0, 0.23, 0.37, 0.26, 0.6900000000000001, 0.01, 0.86, 0.79, 0.52, 0.51, 0.5700000000000001, 0.45, 0.07, 0.14, 0.11, 0.42, 0.09, 0.45, 0.03, 0.55, 0.77, 0.55, 0.52, 0, 0, 0, 0, 0.27, 0.8300000000000001, 0.5, 0.4, 0.47000000000000003, 0.21, 0.43, 0.67, 0.51, 0.24, 0.42, 0.37, 0.67, 0.7000000000000001, 0.65, 0.55, 0.34, 0.16, 0.39, 0.46, 0.48, 0.11, 0.05, 0.06, 0.16, 0.22, 0.39, 0.98, 0.7000000000000001, 0.68, 0.08, 0.55, 0.06, 0.17, 0.26, 0.6000000000000001, 0.15, 0.07, 0.14, 0.30000000000000004, 0, 0.03, 0.29, 0.15, 1.02, 0.17, 0.21, 0, 0.08, 0.06, 0.1, 0, 0.14, 0.33, 0.66, 0.37, 0.08, 0.25, 0.44, 1.19, 0.75, 0.42, 0.43, 0.14, 0.49, 0.39, 0, 0.51, 0.12, 0.6900000000000001, 0.06, 0.01, 0.01, 0.15, 0.73, 0.18, 0.62, 0.59, 0.67, 0.42, 0.08, 0.25 ]
[ 4950, 4951, 4952, 4953, 4954, 4955, 4956, 4957, 4958, 4959, 4960, 4961, 4962, 4963, 4964, 4965, 4966, 4967, 4968, 4969, 4970, 4971, 4972, 4973, 4974, 4975, 4976, 4977, 4978, 4979, 4980, 4981, 4982, 4983, 4984, 4985, 4986, 4987, 4988, 4989, 4990, 4991, 4992, 4993, 4994, 4995, 4996, 4997, 4998, 4999, 5000, 5001, 5002, 5003, 5004, 5005, 5006, 5007, 5008, 5009, 5010, 5011, 5012, 5013, 5014, 5015, 5016, 5017, 5018, 5019, 5020, 5021, 5022, 5023, 5024, 5025, 5026, 5027, 5028, 5029, 5030, 5031, 5032, 5033, 5034, 5035, 5036, 5037, 5038, 5039, 5040, 5041, 5042, 5043, 5044, 5045, 5046, 5047, 5048, 5049, 5050, 5051, 5052, 5053, 5054, 5055, 5056, 5057, 5058, 5059, 5060, 5061, 5062, 5063, 5064, 5065, 5066, 5067, 5068, 5069, 5070, 5071, 5072, 5073, 5074, 5075, 5076, 5077, 5078, 5079, 5080, 5081, 5082, 5083, 5084, 5085, 5086, 5087, 5088, 5089, 5090, 5091, 5092, 5093, 5094, 5095, 5096, 5097, 5098, 5099, 5100, 5101, 5102, 5103, 5104, 5105, 5106, 5107, 5108, 5109, 5110, 5111, 5112, 5113, 5114, 5115, 5116, 5117, 5118, 5119, 5120, 5121, 5122, 5123, 5124, 5125, 5126, 5127, 5128, 5129, 5130, 5131, 5132, 5133, 5134, 5135, 5136, 5137, 5138, 5139, 5140, 5141, 5142, 5143, 5144, 5145, 5146, 5147, 5148, 5149, 5150, 5151, 5152, 5153, 5154, 5155, 5156, 5157, 5158, 5159, 5160, 5161, 5162, 5163, 5164, 5165, 5166, 5167, 5168, 5169, 5170, 5171, 5172, 5173, 5174, 5175, 5176, 5177, 5178, 5179, 5180, 5181, 5182, 5183, 5184, 5185, 5186, 5187, 5188, 5189, 5190, 5191, 5192, 5193, 5194, 5195, 5196, 5197, 5198, 5199, 5200, 5201, 5202, 5203, 5204, 5205, 5206, 5207, 5208, 5209, 5210, 5211, 5212, 5213, 5214, 5215, 5216, 5217, 5218, 5219, 5220, 5221, 5222, 5223, 5224, 5225, 5226, 5227, 5228, 5229, 5230, 5231, 5232, 5233, 5234, 5235, 5236, 5237, 5238, 5239, 5240, 5241, 5242, 5243, 5244, 5245, 5246, 5247, 5248, 5249 ]
viral_gRNA
Watts,2009
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE
UUAGGCAUCUCCUAUGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCUCAUCAGAACAGUCAGACUCAUCAAGCUUCUCUAUCAAAGCAGUAAGUAGUACAUGUAAUGCAACCUAUAAUAGUAGCAAUAGUAGCAUUAGUAGUAGCAAUAAUAAUAGCAAUAGUUGUGUGGUCCAUAGUAAUCAUAGAAUAUAGGAAAAUAUUAAGACAAAGAAAAAUAGACAGGUUAAUUGAUAGACUAAUAGAAAGAGCAGAAGACAGUGGCAAUGAGAGUGAAGGAGAAGUAUCAGCACUUGUGGAG
[ 0.43, 0.19, 1, 0.62, 0.32, 0.59, 1.59, 0.08, 0.08, 0.58, 0.22, 0.09, 0.02, 0.64, 0.42, 0.59, 0.28, 0.13, 0.5700000000000001, 0.65, 0.56, 1.13, 0.66, 0.44, 0.56, 0.6900000000000001, 0.47000000000000003, 0.43, 0.34, 0.31, 0.17, 0.01, 0.05, 0, 0.11, 0.4, 0.36, 0.25, 0.24, 0.34, 0.11, 0.02, 0.45, 0.45, 0.33, 0.28, 0.05, 0, 0, 0.09, 0.23, 0.19, 1.05, 0.84, 0.8300000000000001, 0.68, 0.27, 1.15, 0.4, 0.48, 0.31, 0.75, 0.56, 0.48, 0, 0.18, 0.17, 0.30000000000000004, 0.5, 0.14, 0.66, 0.75, 0.18, 0, 0.02, 0.02, 0.26, 0.27, 0, 0.65, 0.68, 0.34, 0.18, 0.43, 0.61, 0.46, 0.18, 0.16, 0.64, 0.61, 0.4, 0.96, 0.55, 0.78, 0.58, 0.79, 0.51, 0.11, 0.14, 0.06, 0.35000000000000003, 0.62, 0.49, 0.07, 0.01, 0.23, 0.05, 0.04, 0, 0.38, 0.56, 0.23, 0.12, 0.13, 0.14, 0.19, 0.56, 0.52, 0.38, 0.5700000000000001, 0.26, 0.30000000000000004, 0.56, 0.42, 0.12, 0.44, 0.1, 0.15, 0.11, 0.02, 0.22, 0.43, 0.25, 0, 0.05, 0.24, 0.15, 0.21, 0.35000000000000003, 0.61, 0.35000000000000003, 0.2, 0.28, 0.59, 0.53, 0.34, 0.19, 0.48, 0.07, 0.52, 0.58, 0.29, 0.44, 0.47000000000000003, 0.25, 0.54, 0.44, 0.12, 0.41000000000000003, 0.53, 0.31, 0.76, 0.55, 0.33, 0.11, 0.16, 0.19, 0.45, 0.22, 0.35000000000000003, 0.14, 0.1, 0.27, 0.26, 0.63, 0.71, 0.72, 0.58, 0.32, 0.67, 0.54, 0.24, 0.2, 0.54, 0.47000000000000003, 0.85, 0.51, 0.37, 0.49, 0.27, 0.65, 0.28, 0.6900000000000001, 0.53, 0.6900000000000001, 0.79, 0.54, 0.64, 0.5700000000000001, 0.47000000000000003, 0.63, 0.19, 0.27, 0.92, 0.76, 0.93, 0.72, 0.33, 0.52, 0.67, 0.68, 0.55, 0.77, 0.74, 0.5700000000000001, 0.61, 0.58, 0.28, 0.76, 0.58, 0.55, 0.14, 0.51, 0.31, 0.2, 0.23, 0.37, 0.74, 0.7000000000000001, 0.49, 0.25, 0.32, 0.5, 0.34, 0.73, 0.34, 0.41000000000000003, 0.16, 0.35000000000000003, 0.62, 0.63, 0.43, 0.97, 0.12, 0.23, 0.36, 0.47000000000000003, 0.41000000000000003, 0.38, 0.11, 0, 0.30000000000000004, 0.22, 0.67, 0.7000000000000001, 0.56, 0.5700000000000001, 0.19, 0.68, 0.81, 0.29, 0.08, 0.1, 0.06, 0.22, 0.27, 0.09, 0.2, 0.30000000000000004, 0.2, 0.28, 0.24, 0.14, 0.81, 0.8, 0.97, 0.73, 0.98, 0.86, 0.81, 1.07, 0.87, 0.78, 0.29, 0.2, 0.44, 0.19, 0.61, 0.66, 0.31, 0.42, 0.02, 0, 0.06, 0.07, 0.04, 0.05, 0.13, 0.8200000000000001, 0.26 ]
[ 5500, 5501, 5502, 5503, 5504, 5505, 5506, 5507, 5508, 5509, 5510, 5511, 5512, 5513, 5514, 5515, 5516, 5517, 5518, 5519, 5520, 5521, 5522, 5523, 5524, 5525, 5526, 5527, 5528, 5529, 5530, 5531, 5532, 5533, 5534, 5535, 5536, 5537, 5538, 5539, 5540, 5541, 5542, 5543, 5544, 5545, 5546, 5547, 5548, 5549, 5550, 5551, 5552, 5553, 5554, 5555, 5556, 5557, 5558, 5559, 5560, 5561, 5562, 5563, 5564, 5565, 5566, 5567, 5568, 5569, 5570, 5571, 5572, 5573, 5574, 5575, 5576, 5577, 5578, 5579, 5580, 5581, 5582, 5583, 5584, 5585, 5586, 5587, 5588, 5589, 5590, 5591, 5592, 5593, 5594, 5595, 5596, 5597, 5598, 5599, 5600, 5601, 5602, 5603, 5604, 5605, 5606, 5607, 5608, 5609, 5610, 5611, 5612, 5613, 5614, 5615, 5616, 5617, 5618, 5619, 5620, 5621, 5622, 5623, 5624, 5625, 5626, 5627, 5628, 5629, 5630, 5631, 5632, 5633, 5634, 5635, 5636, 5637, 5638, 5639, 5640, 5641, 5642, 5643, 5644, 5645, 5646, 5647, 5648, 5649, 5650, 5651, 5652, 5653, 5654, 5655, 5656, 5657, 5658, 5659, 5660, 5661, 5662, 5663, 5664, 5665, 5666, 5667, 5668, 5669, 5670, 5671, 5672, 5673, 5674, 5675, 5676, 5677, 5678, 5679, 5680, 5681, 5682, 5683, 5684, 5685, 5686, 5687, 5688, 5689, 5690, 5691, 5692, 5693, 5694, 5695, 5696, 5697, 5698, 5699, 5700, 5701, 5702, 5703, 5704, 5705, 5706, 5707, 5708, 5709, 5710, 5711, 5712, 5713, 5714, 5715, 5716, 5717, 5718, 5719, 5720, 5721, 5722, 5723, 5724, 5725, 5726, 5727, 5728, 5729, 5730, 5731, 5732, 5733, 5734, 5735, 5736, 5737, 5738, 5739, 5740, 5741, 5742, 5743, 5744, 5745, 5746, 5747, 5748, 5749, 5750, 5751, 5752, 5753, 5754, 5755, 5756, 5757, 5758, 5759, 5760, 5761, 5762, 5763, 5764, 5765, 5766, 5767, 5768, 5769, 5770, 5771, 5772, 5773, 5774, 5775, 5776, 5777, 5778, 5779, 5780, 5781, 5782, 5783, 5784, 5785, 5786, 5787, 5788, 5789, 5790, 5791, 5792, 5793, 5794, 5795, 5796, 5797, 5798, 5799 ]
viral_gRNA
Watts,2009
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE
UGGAAAAAUGACAUGGUAGAACAGAUGCAUGAGGAUAUAAUCAGUUUAUGGGAUCAAAGCCUAAAGCCAUGUGUAAAAUUAACCCCACUCUGUGUUAGUUUAAAGUGCACUGAUUUGAAGAAUGAUACUAAUACCAAUAGUAGUAGCGGGAGAAUGAUAAUGGAGAAAGGAGAGAUAAAAAACUGCUCUUUCAAUAUCAGCACAAGCAUAAGAGAUAAGGUGCAGAAAGAAUAUGCAUUCUUUUAUAAACUUGAUAUAGUACCAAUAGAUAAUACCAGCUAUAGGUUGAUAAGUUGUAAC
[ 0.17, 0.74, 0.54, 0.85, 0.81, 0.73, 0.8200000000000001, 0.88, 0.78, 0.85, 0.37, 0.09, 0.26, 0.16, 0.11, 0.30000000000000004, 0.18, 0.81, 0.81, 0.61, 0.4, 0.09, 0.5, 0.25, 0.52, 0.28, 0.55, 0.13, 0.75, 0.4, 0.93, 0.53, 0.44, 0.4, 0.53, 0.09, 1.05, 0.5, 0.76, 0.6900000000000001, 0.33, 0.16, 0.52, 0.49, 0.38, 0.41000000000000003, 0.56, 0.9500000000000001, 0.41000000000000003, 0.39, 0.23, 0.18, 0.46, 0.15, 0.28, 0.7000000000000001, 0.67, 0.99, 0.26, 0.02, 0.05, 0.49, 1.05, 0.88, 0.73, 0.2, 0, 0.02, 0.18, 0.26, 0.30000000000000004, 0.12, 0.53, 0.17, 0.78, 0.71, 0.71, 0.47000000000000003, 0.30000000000000004, 0.67, 0.78, 0.55, 0.14, 0.06, 0.01, 0.03, 0.12, 0.04, 0.23, 0.31, 0.44, 0.66, 0.37, 0.21, 0.25, 0.39, 0.6900000000000001, 0.44, 0.25, 0.59, 1.07, 0.9500000000000001, 0.98, 0.76, 0.36, 0.19, 0.27, 0.13, 0.32, 0.08, 0.35000000000000003, 0.58, 0.54, 0.38, 0.79, 0.55, 0.85, 0.97, 0.97, 0.86, 0.88, 0.9400000000000001, 0.47000000000000003, 0.54, 0.66, 0.37, 0.24, 0.04, 0.30000000000000004, 0.55, 0.81, 0.45, 0.4, 0.13, 0.23, 0.4, 0.64, 0.44, 0.6000000000000001, 0.56, 0.54, 0.55, 0.43, 0.51, 0.66, 0.54, 0.19, 0.29, 0.19, 0.42, 0.5700000000000001, 0.59, 0.64, 0.86, 0.41000000000000003, 0.47000000000000003, 0.65, 0.42, 0.71, 0.66, 0.44, 0.46, 0.6900000000000001, 0.87, 0.64, 0.92, 0.8, 0.71, 0.49, 0.76, 0.61, 0.67, 0.68, 0.71, 1.6, 0.08, 1.37, 1.04, 0.75, 0.87, 0.86, 0.54, 0.12, 0.09, 0.23, 0.04, 0.01, 0.01, 0.11, 0.2, 0.26, 0.16, 0.8300000000000001, 1.04, 0.46, 0.54, 0.16, 0.22, 0.52, 0.47000000000000003, 0.4, 0.46, 0.07, 0.6900000000000001, 0.63, 0.42, 0.18, 0.7000000000000001, 0.45, 0.86, 0.74, 0.96, 0.85, 0.68, 1.08, 0.73, 0.93, 0.77, 0.46, 0.08, 0.06, 0.01, 0.07, 0.55, 0.53, 0.59, 0.77, 0.68, 0.61, 0.53, 0.61, 0.5, 2.28, 0.35000000000000003, 0.26, 0.16, 0.26, 0.21, 0.34, 0.09, 0.12, 0.24, 0.75, 0.63, 1.4, 0.38, 1.28, 1.75, 0.4, 0.12, 0.26, 0.41000000000000003, 0.81, 1.17, 0.29, 1.02, 0.51, 0.96, 1.01, 0.41000000000000003, 0.44, 0.12, 0.13, 0.36, 0.6000000000000001, 0.4, 0.65, 0.41000000000000003, 0.99, 0.6900000000000001, 0.9400000000000001, 0.98, 0.59, 0.56, 0.09, 0.2, 0.65, 0.37, 0.21, 0.29, 0.16, 0.37, 0.75, 0.2, 0.09, 0.23, 0.47000000000000003, 0.62, 0.81, 0.6900000000000001, 0.74, 0.71, 0.5, 0.2, 0.25, 0.84, 0.63, 1.04, 0.59, 0.25 ]
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viral_gRNA
Watts,2009
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE
CUUAGGACAACAUAUCUAUGAAACUUACGGGGAUACUUGGGCAGGAGUGGAAGCCAUAAUAAGAAUUCUGCAACAACUGCUGUUUAUCCAUUUCAGAAUUGGGUGUCGACAUAGCAGAAUAGGCGUUACUCGACAGAGGAGAGCAAGAAAUGGAGCCAGUAGAUCCUAGACUAGAGCCCUGGAAGCAUCCAGGAAGUCAGCCUAAAACUGCUUGUACCAAUUGCUAUUGUAAAAAGUGUUGCUUUCAUUGCCAAGUUUGUUUCAUGACAAAAGCCUUAGGCAUCUCCUAUGGCAGGAAGA
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viral_gRNA
Watts,2009