Search is not available for this dataset
name
stringlengths
18
62
sequence
stringlengths
1
600
reactivity
sequencelengths
1
600
seqpos
sequencelengths
1
600
class
stringclasses
5 values
dataset
stringclasses
22 values
Sun, 2021 SARS-CoV-2 in vivo
TTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCATGACGTTCGTGTTGTTTTAGATTTCATCTAAACGAACAAACTAAAATGTCTGATAATGGACCCCAAAATCAGCGAAATGCACCCCGCATTACGTTTGGTGGACCCTCAGATTCAACTGGCAGTAACCAGAATGGAGAACGCAGTGGGGCGCGATCAAAACAACGTCGGCCCCAAGGTTTACCCAATAATACTGCGTCTTGGTTCACCGCTCTCACTCAACATGGCAAGGAAGACCTTAAATTCCCTCGAGGACAAGGCGTTCCAATTAACACCAATAGCAGTCCAGATGACCAAATTGGCTACTACCGAAGAGCTACCAGACGAATTCGTGGTGGTGACGGTAAAATGAAAGATCTCAGTCCAAGATGGTATTTCTACTACCTAGGAACTGGGCCAGAAGCTGGACTTCCCTATGGTGCTAACAAAGACGGCATCATATGGGTTGCAACTGAGGGAGCCTTGAATACACCAAAAGATCACATTGGCACCCGCAATCCTGCTAACAATGCTGCAATCGTGCTACAACTTCCTCAAGGAACAACATTGC
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SARS-CoV-2_gRNA
Sun, 2021 SARS-CoV-2 in vivo
Sun, 2021 SARS-CoV-2 in vivo
GGCGTAAAACACGTCTATCAGTTACGTGCCAGATCAGTTTCACCTAAACTGTTCATCAGACAAGAGGAAGTTCAAGAACTTTACTCTCCAATTTTTCTTATTGTTGCGGCAATAGTGTTTATAACACTTTGCTTCACACTCAAAAGAAAGACAGAATGATTGAACTTTCATTAATTGACTTCTATTTGTGCTTTTTAGCCTTTCTGCTATTCCTTGTTTTAATTATGCTTATTATCTTTTGGTTCTCACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTT
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SARS-CoV-2_gRNA
Sun, 2021 SARS-CoV-2 in vivo
Sun, 2021 SARS-CoV-2 in vivo
CACTGTTGCTACATCACGAACGCTTTCTTATTACAAATTGGGAGCTTCGCAGCGTGTAGCAGGTGACTCAGGTTTTGCTGCATACAGTCGCTACAGGATTGGCAACTATAAATTAAACACAGACCATTCCAGTAGCAGTGACAATATTGCTTTGCTTGTACAGTAAGTGACAACAGATGTTTCATCTCGTTGACTTTCAGGTTACTATAGCAGAGATATTACTAATTATTATGAGGACTTTTAAAGTTTCCATTTGGAATCTTGATTACATCATAAACCTCATAATTAAAAATTTATCTAAGTCACTAACTGAGAATAAATATTCTCAATTAGATGAAGAGCAACCAATGGAGATTGATTAAACGAACATGAAAATTATTCTTTTCTTGGCACTGATAACACTCGCTACTTGTGAGCTTTATCACTACCAAGAGTGTGTTAGAGGTACAACAGTACTTTTAAAAGAACCTTGCTCTTCTGGAACATACGAGGGCAATTCACCATTTCATCCTCTAGCTGATAACAAATTTGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTTAC
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SARS-CoV-2_gRNA
Sun, 2021 SARS-CoV-2 in vivo
Sun, 2021 SARS-CoV-2 in vivo
AGTGTAACTTCTTCAATTGTCATTACTTCAGGTGATGGCACAACAAGTCCTATTTCTGAACATGACTACCAGATTGGTGGTTATACTGAAAAATGGGAATCTGGAGTAAAAGACTGTGTTGTATTACACAGTTACTTCACTTCAGACTATTACCAGCTGTACTCAACTCAATTGAGTACAGACACTGGTGTTGAACATGTTACCTTCTTCATCTACAATAAAATTGTTGATGAGCCTGAAGAACATGTCCAAATTCACACAATCGACGGTTCATCCGGAGTTGTTAATCCAGTAATGGAACCAATTTATGATGAACCGACGACGACTACTAGCGTGCCTTTGTAAGCACAAGCTGATGAGTACGAACTTATGTACTCATTCGTTTCGGAAGAGACAGGTACGTTAATAGTTAATAGCGTACTTCTTTTTCTTGCTTTCGTGGTATTCTTGCTAGTTACACTAGCCATCCTTACTGCGCTTCGATTGTGTGCGTACTGCTGCAATATTGTTAACGTGAGTCTTGTAAAACCTTCTTTTTACGTTTACTCTCGTGTTAAAAATCTGAATTCTTCTAGAGTTCCTGATCTTCTGGTCTAAACG
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SARS-CoV-2_gRNA
Sun, 2021 SARS-CoV-2 in vivo
Sun, 2021 SARS-CoV-2 in vivo
AGTTCCTGATCTTCTGGTCTAAACGAACTAAATATTATATTAGTTTTTCTGTTTGGAACTTTAATTTTAGCCATGGCAGATTCCAACGGTACTATTACCGTTGAAGAGCTTAAAAAGCTCCTTGAACAATGGAACCTAGTAATAGGTTTCCTATTCCTTACATGGATTTGTCTTCTACAATTTGCCTATGCCAACAGGAATAGGTTTTTGTATATAATTAAGTTAATTTTCCTCTGGCTGTTATGGCCAGTAACTTTAGCTTGTTTTGTGCTTGCTGCTGTTTACAGAATAAATTGGATCACCGGTGGAATTGCTATCGCAATGGCTTGTCTTGTAGGCTTGATGTGGCTCAGCTACTTCATTGCTTCTTTCAGACTGTTTGCGCGTACGCGTTCCATGTGGTCATTCAATCCAGAAACTAACATTCTTCTCAACGTGCCACTCCATGGCACTATTCTGACCAGACCGCTTCTAGAAAGTGAACTCGTAATCGGAGCTGTGATCCTTCGTGGACATCTTCGTATTGCTGGACACCATCTAGGACGCTGTGACATCAAGGACCTGCCTAAAGAAATCACTGTTGCTACATCACGAACGCTT
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SARS-CoV-2_gRNA
Sun, 2021 SARS-CoV-2 in vivo
Sun, 2021 SARS-CoV-2 in vivo
CAGCACCTCATGGTGTAGTCTTCTTGCATGTGACTTATGTCCCTGCACAAGAAAAGAACTTCACAACTGCTCCTGCCATTTGTCATGATGGAAAAGCACACTTTCCTCGTGAAGGTGTCTTTGTTTCAAATGGCACACACTGGTTTGTAACACAAAGGAATTTTTATGAACCACAAATCATTACTACAGACAACACATTTGTGTCTGGTAACTGTGATGTTGTAATAGGAATTGTCAACAACACAGTTTATGATCCTTTGCAACCTGAATTAGACTCATTCAAGGAGGAGTTAGATAAATATTTTAAGAATCATACATCACCAGATGTTGATTTAGGTGACATCTCTGGCATTAATGCTTCAGTTGTAAACATTCAAAAAGAAATTGACCGCCTCAATGAGGTTGCCAAGAATTTAAATGAATCTCTCATCGATCTCCAAGAACTTGGAAAGTATGAGCAGTATATAAAATGGCCATGGTACATTTGGCTAGGTTTTATAGCTGGCTTGATTGCCATAGTAATGGTGACAATTATGCTTTGCTGTATGACCAGTTGCTGTAGTTGTCTCAAGGGCTGTTGTTCTTGTGGATCCTGCTGCA
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SARS-CoV-2_gRNA
Sun, 2021 SARS-CoV-2 in vivo
Sun, 2021 SARS-CoV-2 in vivo
TTTGCTCACAGATGAAATGATTGCTCAATACACTTCTGCACTGTTAGCGGGTACAATCACTTCTGGTTGGACCTTTGGTGCAGGTGCTGCATTACAAATACCATTTGCTATGCAAATGGCTTATAGGTTTAATGGTATTGGAGTTACACAGAATGTTCTCTATGAGAACCAAAAATTGATTGCCAACCAATTTAATAGTGCTATTGGCAAAATTCAAGACTCACTTTCTTCCACAGCAAGTGCACTTGGAAAACTTCAAGATGTGGTCAACCAAAATGCACAAGCTTTAAACACGCTTGTTAAACAACTTAGCTCCAATTTTGGTGCAATTTCAAGTGTTTTAAATGATATCCTTTCACGTCTTGACAAAGTTGAGGCTGAAGTGCAAATTGATAGGTTGATCACAGGCAGACTTCAAAGTTTGCAGACATATGTGACTCAACAATTAATTAGAGCTGCAGAAATCAGAGCTTCTGCTAATCTTGCTGCTACTAAAATGTCAGAGTGTGTACTTGGACAATCAAAAAGAGTTGATTTTTGTGGAAAGGGCTATCATCTTATGTCCTTCCCTCAGTCAGCACCTCATGGTGTAGTCTTCTT
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SARS-CoV-2_gRNA
Sun, 2021 SARS-CoV-2 in vivo
Sun, 2021 SARS-CoV-2 in vivo
GCTAGTTATCAGACTCAGACTAATTCTCCTCGGCGGGCACGTAGTGTAGCTAGTCAATCCATCATTGCCTACACTATGTCACTTGGTGCAGAAAATTCAGTTGCTTACTCTAATAACTCTATTGCCATACCCACAAATTTTACTATTAGTGTTACCACAGAAATTCTACCAGTGTCTATGACCAAGACATCAGTAGATTGTACAATGTACATTTGTGGTGATTCAACTGAATGCAGCAATCTTTTGTTGCAATATGGCAGTTTTTGTACACAATTAAACCGTGCTTTAACTGGAATAGCTGTTGAACAAGACAAAAACACCCAAGAAGTTTTTGCACAAGTCAAACAAATTTACAAAACACCACCAATTAAAGATTTTGGTGGTTTTAATTTTTCACAAATATTACCAGATCCATCAAAACCAAGCAAGAGGTCATTTATTGAAGATCTACTTTTCAACAAAGTGACACTTGCAGATGCTGGCTTCATCAAACAATATGGTGATTGCCTTGGTGATATTGCTGCTAGAGACCTCATTTGTGCACAAAAGTTTAACGGCCTTACTGTTTTGCCACCTTTGCTCACAGATGAAATGATTGCT
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SARS-CoV-2_gRNA
Sun, 2021 SARS-CoV-2 in vivo
Sun, 2021 SARS-CoV-2 in vivo
GTAATGGTGTTGAAGGTTTTAATTGTTACTTTCCTTTACAATCATATGGTTTCCAACCCACTAATGGTGTTGGTTACCAACCATACAGAGTAGTAGTACTTTCTTTTGAACTTCTACATGCACCAGCAACTGTTTGTGGACCTAAAAAGTCTACTAATTTGGTTAAAAACAAATGTGTCAATTTCAACTTCAATGGTTTAACAGGCACAGGTGTTCTTACTGAGTCTAACAAAAAGTTTCTGCCTTTCCAACAATTTGGCAGAGACATTGCTGACACTACTGATGCTGTCCGTGATCCACAGACACTTGAGATTCTTGACATTACACCATGTTCTTTTGGTGGTGTCAGTGTTATAACACCAGGAACAAATACTTCTAACCAGGTTGCTGTTCTTTATCAGGATGTTAACTGCACAGAAGTCCCTGTTGCTATTCATGCAGATCAACTTACTCCTACTTGGCGTGTTTATTCTACAGGTTCTAATGTTTTTCAAACACGTGCAGGCTGTTTAATAGGGGCTGAACATGTCAACAACTCATATGAGTGTGACATACCCATTGGTGCAGGTATATGCGCTAGTTATCAGACTCAGACTAATT
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SARS-CoV-2_gRNA
Sun, 2021 SARS-CoV-2 in vivo
Sun, 2021 SARS-CoV-2 in vivo
TGTAGACTGTGCACTTGACCCTCTCTCAGAAACAAAGTGTACGTTGAAATCCTTCACTGTAGAAAAAGGAATCTATCAAACTTCTAACTTTAGAGTCCAACCAACAGAATCTATTGTTAGATTTCCTAATATTACAAACTTGTGCCCTTTTGGTGAAGTTTTTAACGCCACCAGATTTGCATCTGTTTATGCTTGGAACAGGAAGAGAATCAGCAACTGTGTTGCTGATTATTCTGTCCTATATAATTCCGCATCATTTTCCACTTTTAAGTGTTATGGAGTGTCTCCTACTAAATTAAATGATCTCTGCTTTACTAATGTCTATGCAGATTCATTTGTAATTAGAGGTGATGAAGTCAGACAAATCGCTCCAGGGCAAACTGGAAAGATTGCTGATTATAATTATAAATTACCAGATGATTTTACAGGCTGCGTTATAGCTTGGAATTCTAACAATCTTGATTCTAAGGTTGGTGGTAATTATAATTACCTGTATAGATTGTTTAGGAAGTCTAATCTCAAACCTTTTGAGAGAGATATTTCAACTGAAATCTATCAGGCCGGTAGCACACCTTGTAATGGTGTTGAAGGTTTTAATTG
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SARS-CoV-2_gRNA
Sun, 2021 SARS-CoV-2 in vivo
Sun, 2021 SARS-CoV-2 in vivo
AAGTCTAACATAATAAGAGGCTGGATTTTTGGTACTACTTTAGATTCGAAGACCCAGTCCCTACTTATTGTTAATAACGCTACTAATGTTGTTATTAAAGTCTGTGAATTTCAATTTTGTAATGATCCATTTTTGGGTGTTTATTACCACAAAAACAACAAAAGTTGGATGGAAAGTGAGTTCAGAGTTTATTCTAGTGCGAATAATTGCACTTTTGAATATGTCTCTCAGCCTTTTCTTATGGACCTTGAAGGAAAACAGGGTAATTTCAAAAATCTTAGGGAATTTGTGTTTAAGAATATTGATGGTTATTTTAAAATATATTCTAAGCACACGCCTATTAATTTAGTGCGTGATCTCCCTCAGGGTTTTTCGGCTTTAGAACCATTGGTAGATTTGCCAATAGGTATTAACATCACTAGGTTTCAAACTTTACTTGCTTTACATAGAAGTTATTTGACTCCTGGTGATTCTTCTTCAGGTTGGACAGCTGGTGCTGCAGCTTATTATGTGGGTTATCTTCAACCTAGGACTTTTCTATTAAAATATAATGAAAATGGAACCATTACAGATGCTGTAGACTGTGCACTTGACCCTCTC
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SARS-CoV-2_gRNA
Sun, 2021 SARS-CoV-2 in vivo
Sun, 2021 SARS-CoV-2 in vivo
TGTTGTTCTTGTGGATCCTGCTGCAAATTTGATGAAGACGACTCTGAGCCAGTGCTCAAAGGAGTCAAATTACATTACACATAAACGAACTTATGGATTTGTTTATGAGAATCTTCACAATTGGAACTGTAACTTTGAAGCAAGGTGAAATCAAGGATGCTACTCCTTCAGATTTTGTTCGCGCTACTGCAACGATACCGATACAAGCCTCACTCCCTTTCGGATGGCTTATTGTTGGCGTTGCACTTCTTGCTGTTTTTCAGAGCGCTTCCAAAATCATAACCCTCAAAAAGAGATGGCAACTAGCACTCTCCAAGGGTGTTCACTTTGTTTGCAACTTGCTGTTGTTGTTTGTAACAGTTTACTCACACCTTTTGCTCGTTGCTGCTGGCCTTGAAGCCCCTTTTCTCTATCTTTATGCTTTAGTCTACTTCTTGCAGAGTATAAACTTTGTAAGAATAATAATGAGGCTTTGGCTTTGCTGGAAATGCCGTTCCAAAAACCCATTACTTTATGATGCCAACTATTTTCTTTGCTGGCATACTAATTGTTACGACTATTGTATACCTTACAATAGTGTAACTTCTTCAATTGTCATTA
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SARS-CoV-2_gRNA
Sun, 2021 SARS-CoV-2 in vivo
Sun, 2021 SARS-CoV-2 in vivo
TACAAAATGCAAAGAATGCTATTAGAAAAGTGTGACCTTCAAAATTATGGTGATAGTGCAACATTACCTAAAGGCATAATGATGAATGTCGCAAAATATACTCAACTGTGTCAATATTTAAACACATTAACATTAGCTGTACCCTATAATATGAGAGTTATACATTTTGGTGCTGGTTCTGATAAAGGAGTTGCACCAGGTACAGCTGTTTTAAGACAGTGGTTGCCTACGGGTACGCTGCTTGTCGATTCAGATCTTAATGACTTTGTCTCTGATGCAGATTCAACTTTGATTGGTGATTGTGCAACTGTACATACAGCTAATAAATGGGATCTCATTATTAGTGATATGTACGACCCTAAGACTAAAAATGTTACAAAAGAAAATGACTCTAAAGAGGGTTTTTTCACTTACATTTGTGGGTTTATACAACAAAAGCTAGCTCTTGGAGGTTCCGTGGCTATAAAGATAACAGAACATTCTTGGAATGCTGATCTTTATAAGCTCATGGGACACTTCGCATGGTGGACAGCCTTTGTTACTAATGTGAATGCGTCATCATCTGAAGCATTTTTAATTGGATGTAATTATCTTGGCAAA
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SARS-CoV-2_gRNA
Sun, 2021 SARS-CoV-2 in vivo
Watters,2018 CMV SHAPE-seq
GUAAUCUUACCACUGUGUGUGUGCGUGUGUGUGUGUCGAGUCGUGUUGUCCGCACAUUUGAGUCGUGUUGUCCGCACAUUUUAUUUUUAUCUUUGUACAGUGUGUUAGAUUUCCCGAGGCAUGGCUUUCCAAGGUACCAGUAGGACUUUAACUCAACAGUCCUCAGCGGCUACGUCUGACGAUCUUCAAAAGAUAUUAUUUAGCCCUGAAGCCAUUAAGAAAAUGGCUACUGAGUGUGACCUAGGCCGGCAUCAUUGGAUGCGCGCUGAUAAUGCUAUUUCAGUCCGGCCCCUCGUUCCCGAAGUAACCCACGGUCGUAUUGCUUCCUUCUUUAAAUCUGGAUAUGAUGUUGGUGAAUUGUGCUCAAAAGGAUACAUGAGCGUCCCUCAGGUGUUGUGUGCUGUUACUCGAACGGUUUCCACCGAUGCUGAAGGGUCUUUGAGAAUUUACUUAGCUGAUCUAGGUGACAAGGAGUUAUCUCCUAUAGAUGGGCAAUGCGUUUCGUUACAUAACCAUGAUCUUCCCGCUUUGGUGUCUUUCCAACCGACGUAUGACUGUCCUAUGGAAACAGUUGGGAAUCGCAAGCGGUGUUUUGCUGUC
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viral_gRNA
Watters,2018
Watters,2018 CMV SHAPE-seq
GAAUCGCAAGCGGUGUUUUGCUGUCGUUAUCGAAAGACAUGGUUACAUUGGGUAUACCGGUACCACAGCUAGCGUGUGUAGUAAUUGGCAAGCAAGGUUUUCUUCUAAGAAUAACAACUACACUCAUAUCGCAGCUGGGAAGACUCUAGUACUGCCUUUCAACAGAUUAGCUGAGCAAACAAAACCGUCAGCUGUUGCUCGCCUGUUGAAGUCGCAAUUGAACAACAUUGAAUCUUCGCAAUAUCUGUUAACGAAUGCGAAGAUUAAUCAGAAUGCGCGCAGUGAGUCCGAGGAAUUAAAUGUUGAGAGCCCUCCCGCCGCAAUCGGGAGUUCUUCCGCGUCCCGCUCCGAAGCCUUCAGACCGCAGGUGGUUAACGGUCUUUAGCACUUUGGUGCGUAUUAGUAUAUAAGUAUUUGUGAGUCUGUACAUAAUACUAUAUCUAUAGUGUCCUGUGUGAGUUGAUACAGUAGACAUCUGUGACGCGAUGCCGUGUUGAGAAGGGAACACAUCUGGUUUUAGUAAGCCUACAUCACAGUUUUGAGGUUCAAUUCCUCUUACUCCCUGUUGAGCCCCUUACUUUCUCAUGGAUGCUUCUCCGC
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viral_gRNA
Watters,2018
Watters,2018 CMV SHAPE-seq
UACUUUCUCAUGGAUGCUUCUCCGCGAGAUUGCGUUAUUGUCUACUGACUAUAUAGAGAGUGUAUGUGCUGUGUUUUCUCUUUUGUGUCGUAGAAUUGAGUUGAGUCAUGGACAAAUCUGAAUCAACCAGUGCUGGUCGCAACCGUCGACGUCGUCCGCGUCGUGGUUCCCGCUCCGCCCCCUCCUCCGCGGAUGCCAACUUUAGAGUCUUGUCGCAGCAGCUUUCGCGACUUAAUAAGACGUUGUCAGCUGGUCGUCCAACUAUUAACCACCCAACCUUUGUAGGGAGUGAGCGUUGUAAACCUGGAUACACGUUCACAUCUAUUACCCUAAAGCCACCAAAAAUAGACCGUGGGUCUUAUUAUGGUAAAAGGUUGUUAUUACCUGAUUCAGUCACAGAAUAUGAUAAGAAACUUGUUUCGCGCAUUCAAAUUCGAGUUAAUCCUUUGCCGAAAUUUGAUUCUACCGUGUGGGUGACAGUCCGUAAAGUUCCUGCCUCCUCGGACUUAUCCGUUGCCGCCAUCUCUGCUAUGUUUGCGGACGGAGCCUCACCGGUACUGGUUUAUCAGUAUGCCGCAUCUGGAGUCCAAGCUAACAACA
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viral_gRNA
Watters,2018
Watters,2018 CMV SHAPE-seq
GCAUCUGGAGUCCAAGCUAACAACAAAUUGUUGUAUGAUCUUUCGGCGAUGCGCGCUGAUAUAGGCGACAUGAGAAAGUACGCCGUCCUCGUGUACUCAAAAGACGAUGCACUCGAGACGGACGAGCUAGUACUUCAUGUUGACGUCGAGCACCAACGUAUUCCCACAUCUGGGGUGCUCCCAGUAUAAUUCUGUGUUUUCCAGAACCCUCCCUCCGAUUCCUGUGGCGGGAGCUGAGUUGGCAGGUUUUCUAUAAACUGUCUGAAGUCACUAAACGUUUUACGGUGAACGGGUUGUCCAUCCAGCUUACGGCUAAAAUGGUCAGUCGUGGAGAAAUCUACGCCAGUAGACUUACAAGUCUCUGAGGCGCCUUUGAAACCAUCUCCUGGGUUUCUUCGGAAGGACUUCGGUCCGUGUACUUCUAGCACAAUGUGCUAGUUUCAGGGUAUGGGUGCCCCCCCACUUUCGUGGGGGCCUCUAAAAGGAGACCA
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viral_gRNA
Watters,2018
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE
GUUUGGGGAAGAGACAACAACUCCCUCUCAGAAGCAGGAGCCGAUAGACAAGGAACUGUAUCCUUUAGCUUCCCUCAGAUCACUCUUUGGCAGCGACCCCUCGUCACAAUAAAGAUAGGGGGGCAAUUAAAGGAAGCUCUAUUAGAUACAGGAGCAGAUGAUACAGUAUUAGAAGAAAUGAAUUUGCCAGGAAGAUGGAAACCAAAAAUGAUAGGGGGAAUUGGAGGUUUUAUCAAAGUAAGACAGUAUGAUCAGAUACUCAUAGAAAUCUGCGGACAUAAAGCUAUAGGUACAGUAUUAGUAGGACCUACACCUGUCAACAUAAUUGGAAGAAAUCUGUUGACUCAGAUUGGCUGCACUUUAAAUUUUCCCAUUAGUCCUAUUGAGACUGUACCAGUAAAAUUAAAGCCAGGAAUGGAUGGCCCAAAAGUUAAACAAUGGCCAUUGACAGAAGAAAAAAUAAAAGCAUUAGUAGAAAUUUGUACAGAAAUGGAAAAGGAAGGAAAAAUUUCAAAAAUUGGGCCUGAAAAUCCAUACAAUACUCCAGUAUUUGCCAUAAAGAAAAAAGACAGUACUAAAUGGAGAAAAUUAGUAGAUUUC
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viral_gRNA
Watts,2009
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE
GUCUCUCUGGUUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCUAACUAGGGAACCCACUGCUUAAGCCUCAAUAAAGCUUGCCUUGAGUGCUCAAAGUAGUGUGUGCCCGUCUGUUGUGUGACUCUGGUAACUAGAGAUCCCUCAGACCCUUUUAGUCAGUGUGGAAAAUCUCUAGCAGUGGCGCCCGAACAGGGACUUGAAAGCGAAAGUAAAGCCAGAGGAGAUCUCUCGACGCAGGACUCGGCUUGCUGAAGCGCGCACGGCAAGAGGCGAGGGGCGGCGACUGGUGAGUACGCCAAAAAUUUUGACUAGCGGAGGCUAGAAGGAGAGAGAUGGGUGCGAGAGCGUCGGUAUUAAGCGGGGGAGAAUUAGAUAAAUGGGAAAAAAUUCGGUUAAGGCCAGGGGGAAAGAAACAAUAUAAACUAAAACAUAUAGUAUGGGCAAGCAGGGAGCUAGAACGAUUCGCAGUUAAUCCUGGCCUUUUAGAGACAUCAGAAGGCUGUAGACAAAUACUGGGACAGCUACAACCAUCCCUUCAGACAGGAUCAGAAGAACUUAGAUCAUUAUAUAAUACAAUAGCAGUCCUCUAUUGUGUGCA
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viral_gRNA
Watts,2009
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE
GGGCUAAUUCACUCCCAAAGAAGACAAGAUAUCCUUGAUCUGUGGAUCUACCACACACAAGGCUACUUCCCUGAUUGGCAGAACUACACACCAGGGCCAGGGGUCAGAUAUCCACUGACCUUUGGAUGGUGCUACAAGCUAGUACCAGUUGAGCCAGAUAAGGUAGAAGAGGCCAAUAAAGGAGAGAACACCAGCUUGUUACACCCUGUGAGCCUGCAUGGAAUGGAUGACCCUGAGAGAGAAGUGUUAGAGUGGAGGUUUGACAGCCGCCUAGCAUUUCAUCACGUGGCCCGAGAGCUGCAUCCGGAGUACUUCAAGAACUGCUGACAUCGAGCUUGCUACAAGGGACUUUCCGCUGGGGACUUUCCAGGGAGGCGUGGCCUGGGCGGGACUGGGGAGUGGCGAGCCCUCAGAUGCUGCAUAUAAGCAGCUGCUUUUUGCCUGUACUGGGUCUCUCUGGUUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCUAACUAGGGAACCCACUGCUUAAGCCUCAAUAAAGCUUGCCUUGAGUGCUUCA
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viral_gRNA
Watts,2009
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE
CCUCUUCAGCUACCACCGCUUGAGAGACUUACUCUUGAUUGUAACGAGGAUUGUGGAACUUCUGGGACGCAGGGGGUGGGAAGCCCUCAAAUAUUGGUGGAAUCUCCUACAGUAUUGGAGUCAGGAACUAAAGAAUAGUGCUGUUAACUUGCUCAAUGCCACAGCCAUAGCAGUAGCUGAGGGGACAGAUAGGGUUAUAGAAGUAUUACAAGCAGCUUAUAGAGCUAUUCGCCACAUACCUAGAAGAAUAAGACAGGGCUUGGAAAGGAUUUUGCUAUAAGAUGGGUGGCAAGUGGUCAAAAAGUAGUGUGAUUGGAUGGCCUGCUGUAAGGGAAAGAAUGAGACGAGCUGAGCCAGCAGCAGAUGGGGUGGGAGCAGUAUCUCGAGACCUAGAAAAACAUGGAGCAAUCACAAGUAGCAAUACAGCAGCUAACAAUGCUGCUUGUGCCUGGCUAGAAGCACAAGAGGAGGAAGAGGUGGGUUUUCCAGUCACACCUCAGGUACCUUUAAGACCAAUGACUUACAAGGCAGCUGUAGAUCUUAGCCACUUUUUAAAAGAAAAGGGGGGACUGGAAGGGCUAAUUCACUCCCAAAGAAGAC
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viral_gRNA
Watts,2009
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE
AUCAAACAGCUCCAGGCAAGAAUCCUGGCUGUGGAAAGAUACCUAAAGGAUCAACAGCUCCUGGGGAUUUGGGGUUGCUCUGGAAAACUCAUUUGCACCACUGCUGUGCCUUGGAAUGCUAGUUGGAGUAAUAAAUCUCUGGAACAGAUUUGGAAUAACAUGACCUGGAUGGAGUGGGACAGAGAAAUUAACAAUUACACAAGCUUAAUACACUCCUUAAUUGAAGAAUCGCAAAACCAGCAAGAAAAGAAUGAACAAGAAUUAUUGGAAUUAGAUAAAUGGGCAAGUUUGUGGAAUUGGUUUAACAUAACAAAUUGGCUGUGGUAUAUAAAAUUAUUCAUAAUGAUAGUAGGAGGCUUGGUAGGUUUAAGAAUAGUUUUUGCUGUACUUUCUAUAGUGAAUAGAGUUAGGCAGGGAUAUUCACCAUUAUCGUUUCAGACCCACCUCCCAAUCCCGAGGGGACCCGACAGGCCCGAAGGAAUAGAAGAAGAAGGUGGAGAGAGAGACAGAGACAGAUCCAUUCGAUUAGUGAACGGAUCCUUAGCACUUAUCUGGGACGAUCUGCGGAGCCUGUGCCUCUUCAGCUACCACCGCUUGAGA
[ 0.51, 0.59, 0.63, 0.71, 0.61, 0.6000000000000001, 0.27, 0.79, 0.01, 0.03, 0.04, 0.04, 0.02, 0.09, 0.13, 0.03, 0.09, 0.64, 1.05, 0.75, 0.8300000000000001, 0.84, 0.11, 0.03, 0, 0.11, 0.91, 1.28, 0.03, 0.02, 0.04, 0.12, 0.56, 0.97, 0.96, 0.07, 0.02, 0, 0.18, 0.32, 0.06, 0.01, 0.02, 0.11, 1.15, 0.16, 0.08, 0.01, 0, 0.04, 0.02, 0.02, 0.05, 0.48, 0.27, 0.02, 0.02, 0, 0.02, 0.02, 0.03, 0.14, 0.48, 0.1, 0.02, 0.07, 0.62, 0.27, 0.38, 0.18, 0.06, 0.04, 0.07, 0.27, 0.21, 0.06, 0.01, 0.02, 0.03, 0.03, 0.07, 0.79, 0.71, 0.38, 0.31, 0.22, 0.29, 0.01, 0.02, 0.04, 1.08, 0.22, 0.12, 0.02, 0.01, 0, 0.03, 0.03, 0.08, 0.02, 0.07, 0.29, 0.62, 0.06, 0.11, 0.42, 0.1, 0.05, 0.08, 0.14, 0.12, 0.14, 0.1, 0.16, 0.46, 0.58, 0.16, 0.09, 0.09, 0.12, 0.5, 0.58, 0.30000000000000004, 0.37, 0.4, 0.49, 0.52, 0.23, 0.15, 0.47000000000000003, 0.52, 0.49, 0.62, 0.42, 0.71, 0.12, 0.06, 0.06, 0.03, 0.09, 0.33, 0.29, 0.38, 0.37, 0.1, 0.5700000000000001, 0.6000000000000001, 0.6000000000000001, 0.19, 0.61, 0.24, 0.41000000000000003, 0.44, 0.51, 0.56, 0.31, 0.68, 0.62, 0.09, 0.51, 0.22, 0.41000000000000003, 0.32, 0.05, 0.05, 0.16, 0.19, 0.27, 0.29, 0.17, 0.09, 0.37, 0.47000000000000003, 0.38, 0.06, 0.13, 0.19, 0.25, 0.37, 0.08, 0.31, 0.19, 0.49, 0.25, 0.41000000000000003, 0.47000000000000003, 0.53, 0.32, 0.35000000000000003, 0.58, 0.54, 0.16, 0.47000000000000003, 0.34, 0.17, 0.28, 0.58, 0.07, 0.49, 0.1, 0.66, 0.63, 0.55, 0.1, 0.33, 0.41000000000000003, 0.39, 0.37, 0.28, 0.56, 0.09, 0.07, 0.08, 0.12, 0.05, 0.05, 0.7000000000000001, 1.18, 0.92, 0.56, 0.23, 0.34, 0.81, 0.8, 0.32, 0.01, 0.05, 0.05, 0.01, 0.03, 0.01, 0.01, 0.05, 0.04, 0.09, 0.04, 0.01, 0.05, 0, 0.03, 0.06, 0.79, 0.9400000000000001, 0.54, 0.66, 0.48, 0.6000000000000001, 0.72, 0.77, 0.58, 0.51, 0.25, 0.63, 0.58, 0.56, 0.13, 0.36, 0.38, 0.56, 0.71, 0.66, 0.29, 0.42, 1.65, 0.28, 0.26, 0.44, 0.53, 0.59, 0.46, 0.25, 0.56, 1.07, 0.6900000000000001, 0.89, 0.6000000000000001, 0.78, 0.59, 0.88, 0.54, 0.09, 0.03, 0.03, 0.06, 0.5, 0.98, 0.19, 0.17, 0.17, 0.13, 0.14, 0.48, 0.01, 0.03, 0.08, 0.05, 0.01, 0.08, 0.01, 0.03, 0.21, 0.58, 0.75, 0.85, 0.72, 0.28, 1.12, 0.5, 1.26, 0.75, 0.51, 0.92, 0.68, 1.14, 0.55, 0.11, 0.04, 0, 0.07, 0.05, 0.04, 0.01, 0.02, 0.09, 0.08, 0.44, 0.41000000000000003, 2.32, 0.61, 0.89, 0.32, 0.51, 0.5, 0.28, 0.26, 0.45, 0.15, 0.28, 0.23, 0.9500000000000001, 0.32, 0.75, 0.93, 0.23, 0.4, 0.58, 0.5, 0.6000000000000001, 0.2, 0.51, 0.73, 0.35000000000000003, 0.97, 0.52, 0.09, 0.22, 0.14, 0.6000000000000001, 0.54, 0.14, 0.22, 0.49, 0.62, 0.09, 0.17, 0.1, 0.31, 0.8300000000000001, 1.6300000000000001, 0.96, 0.27, 0.35000000000000003, 0.49, 0.65, 0.71, 0.47000000000000003, 0.1, 0.22, 0.25, 0.84, 0.19, 0.21, 0.30000000000000004, 0.07, 0.37, 0.22, 0.22, 0.04, 0.4, 0.41000000000000003, 0.29, 0.04, 0.2, 0.31, 0.34, 0.86, 0.67, 0.14, 0.47000000000000003, 0.51, 0.51, 0.6900000000000001, 0.88, 0.8300000000000001, 0.74, 0.17, 0.44, 0.99, 1.1, 0.31, 0.28, 0.56, 0.63, 0.51, 0.03, 0.02, 0.19, 0.12, 1.07, 0, 0.05, 0.08, 0.18, 0, 0.1, 0.28, 0.6000000000000001, 0.71, 0.64, 0.39, 0.19, 0.59, 0.24, 0.17, 0.26, 0.63, 0.78, 0.68, 0.67, 0, 0, 0.12, 0, 0.03, 0, 0.05, 0.01, 0.02, 0.19, 0.28, 0.18, 0, 0.38, 0, 1.9000000000000001, 1.16, 0.88, 0.53, 0.03, 0.24, 0.42, 0, 0.42, 0, 0.55, 0.27, 0.63, 0.89, 0.06, 0, 0, 0, 0.30000000000000004, 0.03, 0.28, 1.16, 1.08, 0.31, 0.14, 0.39, 0.51, 0.78, 0.9, 0.55, 1.19, 0.74, 0.85, 0.93, 0.31, 0.4, 1.22, 1.29, 0, 0.49, 0.41000000000000003, 0, 0.68, 0.26, 0.8200000000000001, 0.43, 1.1, 0.5, 0.78, 0.54, 0.5700000000000001, 0.37, 0.49, 0.28, 0.8300000000000001, 0.41000000000000003, 0.34, 0.66, 1.17, 0.36, 0, 0, 0, 0, 0.01, 0.24, 0.17, 0.71, 0, 0.77, 0.37, 0.23, 0.65, 0.79, 0.89, 0.67, 0, 0.11, 0.64, 0.28, 0.03, 0.02, 0.19, 0, 0.07, 0.14, 0.53, 1.51, 1.74, 0.38, 0.23, 0.13, 0.02, 0.27, 0.22, 0.64, 0, 0.22, 0.6000000000000001, 0.46, 0.09, 0.32, 0.91, 0.2, 0.41000000000000003, 0.51, 0.34, 0.27, 0.9400000000000001, 0.30000000000000004, 0, 0.51, 1.04, 1.18, 0.17, 0.02, 0.21, 0.4, 0.47000000000000003, 0.08, 0.06, 0, 0.01, 0, 0, 0.13, 0.26, 0.59, 0.6900000000000001, 0.18, 0.02, 0.28, 0.74, 0.06, 0.18, 0.29, 0.5, 0.1, 0.23, 0.25, 0.27, 0.6900000000000001, 0.32, 0.62, 0.16, 0.15 ]
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viral_gRNA
Watts,2009
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE
AAUUUUUCUACUGUAAUUCAACACAACUGUUUAAUAGUACUUGGUUUAAUAGUACUUGGAGUACUGAAGGGUCAAAUAACACUGAAGGAAGUGACACAAUCACACUCCCAUGCAGAAUAAAACAAUUUAUAAACAUGUGGCAGGAAGUAGGAAAAGCAAUGUAUGCCCCUCCCAUCAGUGGACAAAUUAGAUGUUCAUCAAAUAUUACUGGGCUGCUAUUAACAAGAGAUGGUGGUAAUAACAACAAUGGGUCCGAGAUCUUCAGACCUGGAGGAGGCGAUAUGAGGGACAAUUGGAGAAGUGAAUUAUAUAAAUAUAAAGUAGUAAAAAUUGAACCAUUAGGAGUAGCACCCACCAAGGCAAAGAGAAGAGUGGUGCAGAGAGAAAAAAGAGCAGUGGGAAUAGGAGCUUUGUUCCUUGGGUUCUUGGGAGCAGCAGGAAGCACUAUGGGCUGCACGUCAAUGACGCUGACGGUACAGGCCAGACAAUUAUUGUCUGAUAUAGUGCAGCAGCAGAACAAUUUGCUGAGGGCUAUUGAGGCGCAACAGCAUCUGUUGCAACUCACAGUCUGGGGCAUCAAACAGCUCCAGGCAAGAAUCC
[ 0.63, 0.84, 0.16, 0.05, 0.05, 0.05, 0.02, 0.01, 0.04, 0.12, 0.02, 0.27, 0.92, 0.96, 0.74, 0.59, 0.4, 0.45, 1.04, 0.61, 0.64, 0.05, 0.28, 0.1, 0.44, 0.92, 0.23, 0.28, 0.22, 0.15, 0.32, 0.46, 1, 1.42, 1.08, 0.19, 0.30000000000000004, 0.14, 0.28, 0.04, 0.29, 0.61, 0.61, 0.52, 0.34, 0.56, 0.56, 0.87, 1.4, 0.9500000000000001, 0.14, 0.26, 0.12, 0.1, 0.1, 2.01, 1.1, 1.3, 1, 0.66, 0.17, 0.31, 0.63, 0.02, 0.28, 0.52, 0.51, 0.61, 0.22, 0.08, 0.14, 0.09, 0.28, 0.9500000000000001, 0.7000000000000001, 1.15, 0.68, 1.02, 0.8200000000000001, 0.24, 0.34, 0.1, 0.25, 0.4, 0.88, 0.81, 0.24, 0.31, 0.75, 0.33, 0.13, 0.16, 0.47000000000000003, 0.2, 0.81, 0.1, 0.51, 0.56, 0.26, 0.22, 0.39, 0.06, 0.16, 0.14, 0.09, 0.02, 0.04, 0.09, 0.63, 0.5, 0.32, 0.22, 0.37, 0.31, 0.62, 1.09, 0.56, 1, 0.6900000000000001, 0.68, 0.66, 0.26, 0.63, 0.65, 0.46, 0.62, 0.62, 1.47, 0.58, 0.6900000000000001, 0.36, 0.44, 0.33, 0.44, 0.24, 0.19, 0.07, 0.1, 0.29, 0.32, 0.55, 0.44, 0.8300000000000001, 1.1, 0.24, 0.07, 0.09, 0.22, 0.25, 0.12, 0.21, 0.16, 0.21, 0.41000000000000003, 0.71, 0.31, 0.71, 0.74, 0.19, 0.9400000000000001, 0.47000000000000003, 1.07, 0.5700000000000001, 0.33, 0.01, 0, 0.02, 0.04, 0.07, 0.06, 0.03, 0.15, 0.61, 0.22, 0.49, 0.61, 0.27, 0.11, 0.06, 0.07, 0.16, 0.04, 0.28, 0.46, 0.53, 0.32, 0.46, 0.68, 0.74, 0.76, 0.12, 0, 0, 0.06, 0.12, 0.24, 0.43, 0.66, 0.81, 0.48, 0.8200000000000001, 0.6000000000000001, 0.51, 0.42, 0.52, 0.33, 0.05, 0.14, 0.16, 0, 0, 0, 0.1, 0.13, 0.12, 0.31, 0.30000000000000004, 0.02, 0.63, 0.85, 0.53, 0.32, 0.66, 0.64, 0.76, 0.76, 0.54, 0.53, 0.21, 0.14, 0.19, 0.08, 0.1, 0.11, 0.33, 0.75, 0.87, 0.65, 0.87, 0.47000000000000003, 0.19, 0.41000000000000003, 0.43, 0.19, 0.44, 0.73, 0.41000000000000003, 0.03, 0, 0, 0, 0, 0.01, 0.89, 0.53, 0.45, 0.52, 0.17, 0.18, 0.48, 0.41000000000000003, 0.24, 0.61, 0.62, 0.65, 0, 0, 0, 0.36, 0.12, 0.14, 0.01, 0.07, 0.05, 0.21, 0.18, 0, 0.34, 0.6000000000000001, 0.43, 0.99, 0.28, 0.67, 0.33, 0.14, 0.05, 0.16, 0.38, 0.16, 0.44, 0.46, 0.37, 0.4, 0.53, 0.71, 0.76, 0.78, 0.66, 0.62, 0.79, 0.36, 0.86, 0.6900000000000001, 0.74, 0.21, 0.8, 0.58, 0.15, 1.21, 0.37, 0.91, 0.65, 0.89, 0.63, 1, 0.47000000000000003, 0.87, 0.54, 0.74, 0.9400000000000001, 0.87, 1.02, 0.8200000000000001, 0.8300000000000001, 0.96, 0.84, 1.01, 0.85, 0.5, 0.46, 0.49, 0.8200000000000001, 0.74, 0.54, 0.09, 0.09, 0.56, 0.39, 0.91, 1.01, 0.54, 0.65, 0.5700000000000001, 0.77, 0.38, 0.31, 0.09, 0.1, 0.26, 0.1, 0.13, 0.30000000000000004, 0.31, 0.02, 0.02, 0.05, 0.08, 0.13, 0.06, 0.06, 0.08, 0.38, 0.89, 1.04, 0.75, 0.75, 0.9500000000000001, 1.57, 1.73, 1.9000000000000001, 0.06, 0.02, 0.01, 0, 0.05, 0.09, 0, 0.06, 0.04, 0.14, 0.08, 0, 0.03, 0.14, 0.4, 0.26, 0.29, 0.56, 0.7000000000000001, 0.06, 0.04, 0.06, 0.04, 0.03, 0.1, 0.13, 0.09, 0.04, 0.28, 0.56, 1.26, 2.12, 2.69, 0, 0, 0.04, 0.1, 0.04, 0.07, 0.39, 0.19, 0, 0.05, 0, 0.05, 0.02, 0.03, 0, 0.16, 0.03, 0.01, 0.11, 0.01, 0.08, 0, 0.08, 0.13, 1.79, 4.01, 0.75, 0.9400000000000001, 0, 0.03, 0.01, 0.05, 0, 0.09, 0.13, 0.08, 0.76, 1.83, 0, 0, 0.06, 0.01, 0.13, 0.6900000000000001, 0.37, 1.18, 0.45, 0.72, 0.06, 0.15, 0.09, 0, 0.13, 0.02, 0.04, 0, 0.11, 2.19, 1.55, 0.79, 0.1, 0.07, 0.02, 0.13, 0.02, 0.02, 0.09, 1.99, 0, 0.11, 0.89, 0.91, 1.13, 0.06, 0.73, 0.8200000000000001, 0.63, 0.2, 0, 0.08, 0.04, 0.05, 0, 0.07, 0.44, 0.30000000000000004, 0.51, 1.3, 0.71, 0.17, 0.02, 0.05, 0, 0.04, 0.5, 1.75, 0.72, 0.7000000000000001, 0.14, 0.23, 0.04, 0.01, 0.07, 0.18, 0.89, 0.22, 0, 0.12, 0.1, 0, 0.17, 0.33, 0.51, 0.61, 0.02, 0.8, 0.8, 0.43, 0.61, 0.25, 0.06, 0, 0.03, 0.13, 0.62, 0.8200000000000001, 0.85, 0.35000000000000003, 0.07, 0.6000000000000001, 2.01, 1.21, 0.42, 0.21, 0.42, 0.18, 0.11, 0.39, 0.03, 0.09, 0.32, 0.37, 0.03, 0.03, 0.03, 0.27, 0.79, 0.51, 0.18, 0.04, 0.02, 0.01, 0.06, 0, 0.01, 0.63, 0.42, 0.13, 0.19, 0.17, 0.99, 0.64, 1.12, 0, 0.03, 0.01, 0.05, 0.05, 0.01, 0.05, 0.01, 0.01, 0.51, 0.59, 0.63, 0.71, 0.61, 0.6000000000000001, 0.27, 0.79, 0.01, 0.03, 0.04, 0.04, 0.02, 0.09, 0.13, 0.03, 0.09, 0.64, 1.05, 0.75, 0.8300000000000001, 0.84, 0.11, 0.03, 0 ]
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viral_gRNA
Watts,2009
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE
AUAGUAAGAAUGUAUAGCCCUACCAGCAUUCUGGACAUAAGACAAGGACCAAAGGAACCCUUUAGAGACUAUGUAGACCGAUUCUAUAAAACUCUAAGAGCCGAGCAAGCUUCACAAGAGGUAAAAAAUUGGAUGACAGAAACCUUGUUGGUCCAAAAUGCGAACCCAGAUUGUAAGACUAUUUUAAAAGCAUUGGGACCAGGAGCGACACUAGAAGAAAUGAUGACAGCAUGUCAGGGAGUGGGGGGACCCGGCCAUAAAGCAAGAGUUUUGGCUGAAGCAAUGAGCCAAGUAACAAAUCCAGCUACCAUAAUGAUACAGAAAGGCAAUUUUAGGAACCAAAGAAAGACUGUUAAGUGUUUCAAUUGUGGCAAAGAAGGGCACAUAGCCAAAAAUUGCAGGGCCCCUAGGAAAAAGGGCUGUUGGAAAUGUGGAAAGGAAGGACACCAAAUGAAAGAUUGUACUGAGAGACAGGCUAAUUUUUUAGGGAAGAUCUGGCCUUCCCACAAGGGAAGGCCAGGGAAUUUUCUUCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCUUCAGGUUUGGGGAAGAGACAACAACUCCC
[ 0.66, 0.45, 0.6900000000000001, 0.51, 0.41000000000000003, 1.04, 0.91, 0.74, 0.7000000000000001, 0.79, 0.43, 0.92, 0.49, 0.84, 0.44, 0.68, 0.16, 0.07, 0.02, 0.07, 0.31, 0.59, 0.18, 0.36, 1.74, 0.18, 0.06, 0.17, 0.09, 0.05, 0, 0.01, 0.08, 0.13, 0.12, 0.03, 0.96, 0.65, 1.48, 1.57, 0.38, 0.25, 0.06, 0.12, 0.12, 0.08, 0.12, 0.56, 0.11, 0.14, 0.36, 0.48, 0.92, 0.54, 0.59, 0.7000000000000001, 0.25, 0.1, 0.32, 0.09, 0.34, 0.33, 0.46, 0.44, 0.27, 0.29, 0.29, 0.28, 0.22, 0.24, 0.47000000000000003, 0.17, 0.13, 0.08, 0.30000000000000004, 0.24, 0.39, 1.18, 0.22, 0.71, 0.65, 0.54, 0.25, 0.1, 0.16, 0.35000000000000003, 0.30000000000000004, 0.5700000000000001, 0.5700000000000001, 0.6000000000000001, 0.33, 0, 0.05, 0.04, 0.17, 0.46, 0.8, 0.2, 0.19, 0, 0.06, 0.15, 0.58, 0.67, 0.28, 0.21, 0.39, 0.39, 0, 0.01, 0.05, 0.22, 0.33, 1.08, 0.9500000000000001, 0.88, 1.09, 0.58, 0.64, 0.89, 0.48, 0.56, 0.93, 0.87, 0.91, 0.75, 0.75, 0.74, 0.31, 0.25, 0.29, 0.47000000000000003, 0.64, 0.56, 0.89, 0.86, 0.6900000000000001, 0.75, 0.58, 0.87, 0.51, 0.5, 0.25, 0, 0.07, 0.23, 0.43, 0.47000000000000003, 0.41000000000000003, 0.48, 0.17, 0.17, 0.12, 0.2, 0.64, 0.68, 0.71, 0.36, 0.21, 0.13, 0.30000000000000004, 0.36, 0.44, 0.48, 0.5700000000000001, 0.39, 0.13, 1.11, 0.33, 0.19, 0.46, 1.24, 0.65, 0.75, 2.1, 1.13, 1.14, 0.15, 0.23, 0.29, 0.07, 0, 0.26, 0, 0.34, 0.43, 0.32, 0.42, 0.61, 0.87, 0.12, 0.44, 0.35000000000000003, 0.13, 0.26, 0.53, 0.42, 0.36, 0.14, 0.11, 0.33, 0.59, 0.21, 0.34, 0.22, 0.11, 0.12, 0.18, 0.14, 0.19, 0.1, 0.2, 0.65, 0.18, 0.24, 0.28, 0.41000000000000003, 0.55, 0.52, 0.42, 0.1, 0.65, 0.54, 0.15, 0.2, 0.22, 0.04, 0.06, 0.26, 0.08, 0.53, 0.09, 0.24, 0.27, 0.09, 0.30000000000000004, 0.38, 0.48, 0.29, 0.46, 0.35000000000000003, 0.30000000000000004, 0.22, 0.19, 0.12, 0.26, 0.13, 0, 0.21, 0.21, 0.15, 0.18, 0.19, 0.12, 0.07, 0.34, 0.51, 0.2, 0.44, 0.6900000000000001, 0.75, 0.5, 0, 0.34, 0.37, 0.67, 0.30000000000000004, 0.04, 0.23, 0.01, 0.08, 0.16, 0.08, 0.02, 0.03, 0.26, 0.64, 0.62, 0.56, 0.64, 0, 0.22, 0.35000000000000003, 0.21, 0.13, 0.19, 0.12, 0.11, 0.06, 0.14, 0.41000000000000003, 0.24, 0.31, 0.26, 0.5700000000000001, 0.29, 0.7000000000000001, 0.6900000000000001, 0.66, 0.46, 0.15, 0.23, 0.37, 0.19, 0.17, 0.18, 0.27, 0.19, 0.08, 0.04, 0.41000000000000003, 0.32, 0.33, 0.32, 0.33, 0.42, 0.09, 0.6000000000000001, 0.03, 0.44, 0.9500000000000001, 0.74, 0.61, 0.12, 0.5700000000000001, 0.6900000000000001, 0, 0.4, 0.42, 0.18, 0.15, 0.01, 0.62, 0.56, 0.56, 0.51, 0.42, 0.22, 0.11, 0, 0.4, 0.44, 0.30000000000000004, 0.45, 0.44, 0.46, 0.31, 0.36, 0.28, 0.21, 0.24, 0.33, 0.29, 0.24, 0.24, 0.24, 0.23, 0.11, 0.14, 0.08, 0.09, 0.19, 0.1, 0.14, 0.31, 0.56, 0.2, 0.11, 0.04, 0.22, 0.18, 0.31, 0.71, 0.74, 0.79, 0.6000000000000001, 0.65, 0.81, 0.79, 0.59, 0.18, 0.43, 0.25, 0.37, 0.8300000000000001, 0.8200000000000001, 0.48, 0.19, 0, 0.12, 0.31, 0.44, 0.5, 0.81, 0.47000000000000003, 0.28, 0.48, 0.86, 1.33, 1.09, 0.97, 0.23, 0.1, 0.12, 0.1, 0.17, 0.19, 0.77, 1.73, 0.96, 0.56, 0.58, 0.38, 0.8200000000000001, 1.34, 0.88, 0.05, 0.09, 0.06, 0, 0.13, 0.12, 0.08, 0.05, 0.2, 0.15, 0.51, 0.75, 0.93, 0.31, 0.56, 0.51, 0.41000000000000003, 0.31, 0.41000000000000003, 0.46, 0.63, 0.5700000000000001, 0.23, 0.17, 0.23, 0.26, 0.19, 0.26, 0.06, 0.8, 0.01, 0, 0.38, 1.4, 1.29, 0.71, 0.44, 0.28, 0.17, 0.35000000000000003, 0.36, 0.13, 0, 0.1, 2.1, 0.78, 1.77, 0, 0.04, 0.09, 1.8800000000000001, 1.53, 1, 1.24, 1.1, 0, 0.17, 0.11, 0.07, 0.13, 0.73, 1.13, 0.03, 0.26, 0.41000000000000003, 0.32, 0.2, 0.21, 0.32, 0.8300000000000001, 0.30000000000000004, 0.07, 0.18, 0.51, 0.5, 0.34, 0.6000000000000001, 0.36, 0, 0.06, 0.05, 0.03, 0.05, 0.04, 0.04, 0.03, 0.01, 0, 0, 1.24, 0.29, 0.81, 1.21, 0.01, 0.02, 0.06, 0.04, 0.02, 0.13, 0.08, 0.13, 0, 0, 0, 0.14, 0.5, 0.49, 0.58, 0.18, 0.14, 0.05, 0.08, 0, 0.08, 0.31, 0, 1.35, 1.7, 1.43, 0.78, 0, 0.62, 0.84, 0.6900000000000001, 0.06, 0, 0.28, 0.51, 0.27, 0.41000000000000003, 0, 0.03, 0.07, 0.08, 0, 0.06, 0.03, 0, 0, 0, 0.2, 1.08, 0.13, 0, 0.53, 0.74, 0.76, 0.61, 0.7000000000000001, 0.76, 0.75, 0.76, 0.21, 0.02, 0.08, 0.22, 0.07, 0.61, 0.24, 0.18, 0.19, 0.34, 0.28, 0.11, 0.02, 0.01, 0.03, 0.15, 0.37, 0.32, 0.52, 0.17, 0.14, 0, 0.43, 1.62, 0.14, 0.28, 0.09, 0, 0.02, 0.01, 0.01, 0.01 ]
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viral_gRNA
Watts,2009
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE
CAGCUAUAGGUUGAUAAGUUGUAACACCUCAGUCAUUACACAGGCCUGUCCAAAGGUAUCCUUUGAGCCAAUUCCCAUACAUUAUUGUGCCCCGGCUGGUUUUGCGAUUCUAAAAUGUAAUAAUAAGACGUUCAAUGGAACAGGACCAUGUACAAAUGUCAGCACAGUACAAUGUACACAUGGAAUCAGGCCAGUAGUAUCAACUCAACUGCUGUUAAAUGGCAGUCUAGCAGAAGAAGAUGUAGUAAUUAGAUCUGCCAAUUUCACAGACAAUGCUAAAACCAUAAUAGUACAGCUGAACACAUCUGUAGAAAUUAAUUGUACAAGACCCAACAACAAUACAAGAAAAAGUAUCCGUAUCCAGAGGGGACCAGGGAGAGCAUUUGUUACAAUAGGAAAAAUAGGAAAUAUGAGACAAGCACAUUGUAACAUUAGUAGAGCAAAAUGGAAUGCCACUUUAAAACAGAUAGCUAGCAAAUUAAGAGAACAAUUUGGAAAUAAUAAAACAAUAAUCUUUAAGCAAUCCUCAGGAGGGGACCCAGAAAUUGUAACGCACAGUUUUAAUUGUGGAGGGGAAUUUUUCUACUGUAAUUCAACACA
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viral_gRNA
Watts,2009
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE
GAACUUAAGAGUGAAGCUGUUAGACAUUUUCCUAGGAUAUGGCUCCAUAACUUAGGACAACAUAUCUAUGAAACUUACGGGGAUACUUGGGCAGGAGUGGAAGCCAUAAUAAGAAUUCUGCAACAACUGCUGUUUAUCCAUUUCAGAAUUGGGUGUCGACAUAGCAGAAUAGGCGUUACUCGACAGAGGAGAGCAAGAAAUGGAGCCAGUAGAUCCUAGACUAGAGCCCUGGAAGCAUCCAGGAAGUCAGCCUAAAACUGCUUGUACCAAUUGCUAUUGUAAAAAGUGUUGCUUUCAUUGCCAAGUUUGUUUCAUGACAAAAGCCUUAGGCAUCUCCUAUGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCUCAUCAGAACAGUCAGACUCAUCAAGCUUCUCUAUCAAAGCAGUAAGUAGUACAUGUAAUGCAACCUAUAAUAGUAGCAAUAGUAGCAUUAGUAGUAGCAAUAAUAAUAGCAAUAGUUGUGUGGUCCAUAGUAAUCAUAGAAUAUAGGAAAAUAUUAAGACAAAGAAAAAUAGACAGGUUAAUUGAUAGACUAAUAGAAAGAGCAGAAGACAGUGGCAAUGAGAGUGA
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viral_gRNA
Watts,2009
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE
CAGGUGAUGAUUGUGUGGCAAGUAGACAGGAUGAGGAUUAACACAUGGAAAAGAUUAGUAAAACACCAUAUGUAUAUUUCAAGGAAAGCUAAGGACUGGUUUUAUAGACAUCACUAUGAAAGUACUAAUCCAAAAAUAAGUUCAGAAGUACACAUCCCACUAGGGGAUGCUAAAUUAGUAAUAACAACAUAUUGGGGUCUGCAUACAGGAGAAAGAGACUGGCAUUUGGGUCAGGGAGUCUCCAUAGAAUGGAGGAAAAAGAGAUAUAGCACACAAGUAGACCCUGACCUAGCAGACCAACUAAUUCAUCUGCACUAUUUUGAUUGUUUUUCAGAAUCUGCUAUAAGAAAUACCAUAUUAGGACGUAUAGUUAGUCCUAGGUGUGAAUAUCAAGCAGGACAUAACAAGGUAGGAUCUCUACAGUACUUGGCACUAGCAGCAUUAAUAAAACCAAAACAGAUAAAGCCACCUUUGCCUAGUGUUAGGAAACUGACAGAGGACAGAUGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCAUACAAUGAAUGGACACUAGAGCUUUUAGAGGAACUUAAGAGUGAAGCUGUUAGAC
[ 0.01, 0.32, 0.1, 0.29, 0.1, 0.23, 0.64, 0.52, 0.54, 0.71, 0.52, 0.4, 0.46, 0.14, 0.7000000000000001, 0.1, 0.21, 0.34, 0.25, 0.8300000000000001, 0.68, 0.76, 0.66, 0.99, 0.8200000000000001, 0.77, 0.29, 0.81, 0.63, 0.6900000000000001, 0.8300000000000001, 0.38, 0.79, 0.66, 0.38, 0.25, 0.46, 0.38, 0.63, 0.81, 0.44, 0.19, 0.25, 0.06, 0.25, 0.09, 0.41000000000000003, 0.5, 0.78, 0.71, 0.93, 0.88, 0.54, 0.65, 0.33, 0.68, 0.6900000000000001, 0.64, 0.4, 1.01, 0.79, 0.55, 0.43, 0.11, 0.33, 0.01, 0, 0.17, 0.08, 0.34, 0.07, 0.19, 0.26, 1.04, 0.09, 0.6900000000000001, 0.17, 0.22, 0.39, 0.15, 0.67, 0.74, 0.85, 0.56, 0.58, 0.62, 0.62, 0.2, 0.03, 0.23, 0.73, 0.91, 0.44, 0.32, 0.38, 0.13, 0.19, 0.26, 0.13, 0.12, 0.28, 0.32, 0.38, 0.6900000000000001, 0.34, 0.86, 0.47000000000000003, 1.03, 0.23, 0.34, 0.13, 0.12, 0.38, 0.06, 0.08, 0.5, 0.05, 0.26, 0.34, 0.5, 0.44, 1.27, 0.25, 0.31, 0.06, 0.29, 0.42, 0.37, 0.14, 0.14, 0.27, 0.68, 0.66, 0.67, 0.51, 0.56, 0.44, 0.88, 0.68, 0.31, 0.22, 0.33, 0.17, 0.78, 0.7000000000000001, 0.77, 0.74, 0.8300000000000001, 0.5, 1.1, 0.23, 0.26, 0.03, 0.14, 0.1, 0.05, 0.06, 0.12, 0.85, 0.2, 0.53, 0.62, 1.36, 0.17, 0.08, 0, 0, 0.06, 0, 0.09, 0.35000000000000003, 0.9, 0.52, 0.58, 0.2, 0.26, 0.59, 0.44, 0.21, 0.74, 0.7000000000000001, 0.16, 0.9, 0.72, 0, 0.61, 0.48, 0, 0.73, 0.11, 0.6900000000000001, 0.38, 0.52, 1.93, 0.52, 0.07, 0, 0.04, 0.04, 0, 0.05, 0.07, 1.35, 0.45, 1.11, 0, 0.16, 0.07, 0.5700000000000001, 0.5700000000000001, 0.68, 1.09, 1.3800000000000001, 0.84, 0.77, 1.29, 1.17, 0.9, 0.02, 0.06, 0.04, 0.36, 0.03, 0.98, 0.56, 1, 0.51, 0, 0.05, 0.01, 0, 0.07, 0.01, 0.02, 0, 0.04, 0.5, 0.93, 0.24, 0, 0.03, 0, 0.01, 0.26, 0.9500000000000001, 0.92, 1.02, 0.88, 0.64, 0.17, 0.01, 0.04, 0.05, 0, 0.64, 1.04, 0.84, 0.8, 0.84, 0.81, 1.15, 0.99, 0.8, 0.99, 0.29, 1.1, 0.41000000000000003, 1.02, 0.71, 0.19, 0.9, 0, 0.64, 0.04, 0.81, 0.68, 0.89, 0.58, 1.14, 0.88, 0.61, 0.02, 0, 0.05, 0.05, 0.01, 0.01, 0, 0.03, 0.22, 1.65, 0.1, 0.01, 0.13, 0.04, 0.15, 0, 0.08, 0.78, 0.51, 0.12, 0.28, 0.52, 0.53, 0.27, 0.27, 0.08, 0.23, 0, 0.03, 0.01, 0.05, 0.03, 0.59, 0.05, 0.24, 0.45, 0.19, 0.35000000000000003, 0.7000000000000001, 0.39, 0.6000000000000001, 0.9400000000000001, 0.5700000000000001, 0.18, 0.08, 0.03, 0.13, 0.21, 0.13, 0.12, 0.03, 0.63, 0.68, 0.89, 0.67, 0.30000000000000004, 0.06, 0.09, 0.24, 0, 0.07, 0.52, 0.38, 0.71, 0.58, 0.5, 0.51, 1.27, 0.30000000000000004, 0.2, 0.1, 0, 0, 0.51, 0.42, 2.7, 1, 0.2, 0, 0.02, 0.03, 0.05, 0.07, 0.63, 0.44, 1.04, 0.43, 0.9400000000000001, 0.79, 0.5, 0.43, 1.29, 0, 0.01, 0.02, 0.01, 0, 0.03, 0.05, 0.56, 0.18, 0.05, 0.05, 0.16, 0.1, 0.30000000000000004, 0.43, 0.52, 0.23, 0.54, 0.43, 0.26, 0.8300000000000001, 0.37, 0.13, 0.03, 0.18, 0.21, 0.44, 0.54, 0.13, 0.9400000000000001, 0.41000000000000003, 0.8, 0.62, 0.09, 0.75, 0.68, 0.52, 0.49, 0.39, 0.67, 0.44, 0.17, 0.24, 0.08, 0.14, 0.05, 0.07, 0.25, 0.52, 0.15, 0.64, 0.62, 0.53, 0.55, 0.04, 0.09, 0.02, 0, 0, 0.01, 0.06, 0.04, 0.1, 0.35000000000000003, 0.81, 0.25, 0.63, 0.4, 0.15, 0.43, 0.26, 0.34, 0.7000000000000001, 0.56, 0.34, 0.74, 1.11, 0.62, 0.85, 0.6900000000000001, 0.32, 0.31, 0.6900000000000001, 0.8200000000000001, 1.37, 0.25, 0.89, 0.56, 1.17, 0.37, 0.56, 0.53, 1.4, 0.19, 0.26, 0.32, 0.98, 0.41000000000000003, 0.19, 0.02, 0.14, 0.16, 0.85, 0.9400000000000001, 0.17, 0.31, 0.5, 0.6000000000000001, 0.5, 0.05, 0.13, 0.65, 0.77, 0.27, 0.01, 0.32, 0.28, 0.48, 0.03, 0.06, 0.4, 0.21, 0, 0.14, 0.35000000000000003, 0, 0.81, 0.53, 0.8, 0.29, 0.31, 0.27, 0.42, 0.64, 0, 0.85, 0.91, 0.23, 0.17, 0.08, 0, 0.03, 0.5700000000000001, 0.51, 0.46, 0.76, 0.8300000000000001, 0.59, 0.46, 0, 0, 0.56, 1.23, 0.4, 0.21, 0.01, 0.08, 0.12, 0.5, 0, 0.81, 0.6900000000000001, 0.29, 0.61, 0.08, 0.78, 1.08, 0.17, 0, 0.23, 0.37, 0.26, 0.6900000000000001, 0.01, 0.86, 0.79, 0.52, 0.51, 0.5700000000000001, 0.45, 0.07, 0.14, 0.11, 0.42, 0.09, 0.45, 0.03, 0.55, 0.77, 0.55, 0.52, 0, 0, 0, 0, 0.27, 0.8300000000000001, 0.5, 0.4, 0.47000000000000003, 0.21, 0.43, 0.67, 0.51, 0.24, 0.42, 0.37, 0.67, 0.7000000000000001, 0.65, 0.55, 0.34, 0.16, 0.39, 0.46, 0.48, 0.11, 0.05, 0.06, 0.16, 0.22, 0.39, 0.98, 0.7000000000000001, 0.68, 0.08, 0.55 ]
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viral_gRNA
Watts,2009
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE
AGAAGCAGAAGUAAUUCCAGCAGAGACAGGGCAAGAAACAGCAUACUUCCUCUUAAAAUUAGCAGGAAGAUGGCCAGUAAAAACAGUACAUACAGACAAUGGCAGCAAUUUCACCAGUACUACAGUUAAGGCCGCCUGUUGGUGGGCGGGGAUCAAGCAGGAAUUUGGCAUUCCCUACAAUCCCCAAAGUCAAGGAGUAAUAGAAUCUAUGAAUAAAGAAUUAAAGAAAAUUAUAGGACAGGUAAGAGAUCAGGCUGAACAUCUUAAGACAGCAGUACAAAUGGCAGUAUUCAUCCACAAUUUUAAAAGAAAAGGGGGGAUUGGGGGGUACAGUGCAGGGGAAAGAAUAGUAGACAUAAUAGCAACAGACAUACAAACUAAAGAAUUACAAAAACAAAUUACAAAAAUUCAAAAUUUUCGGGUUUAUUACAGGGACAGCAGAGAUCCAGUUUGGAAAGGACCAGCAAAGCUCCUCUGGAAAGGUGAAGGGGCAGUAGUAAUACAAGAUAAUAGUGACAUAAAAGUAGUGCCAAGAAGAAAAGCAAAGAUCAUCAGGGAUUAUGGAAAACAGAUGGCAGGUGAUGAUUGUGUGGCAAGUAG
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viral_gRNA
Watts,2009
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE
GGAAAAGCAGGAUAUGUAACUGACAGAGGAAGACAAAAAGUUGUCCCCCUAACGGACACAACAAAUCAGAAGACUGAGUUACAAGCAAUUCAUCUAGCUUUGCAGGAUUCGGGAUUAGAAGUAAACAUAGUGACAGACUCACAAUAUGCAUUGGGAAUCAUUCAAGCACAACCAGAUAAGAGUGAAUCAGAGUUAGUCAGUCAAAUAAUAGAGCAGUUAAUAAAAAAGGAAAAAGUCUACCUGGCAUGGGUACCAGCACACAAAGGAAUUGGAGGAAAUGAACAAGUAGAUGGGUUGGUCAGUGCUGGAAUCAGGAAAGUACUAUUUUUAGAUGGAAUAGAUAAGGCCCAAGAAGAACAUGAGAAAUAUCACAGUAAUUGGAGAGCAAUGGCUAGUGAUUUUAACCUACCACCUGUAGUAGCAAAAGAAAUAGUAGCCAGCUGUGAUAAAUGUCAGCUAAAAGGGGAAGCCAUGCAUGGACAAGUAGACUGUAGCCCAGGAAUAUGGCAGCUAGAUUGUACACAUUUAGAAGGAAAAGUUAUCUUGGUAGCAGUUCAUGUAGCCAGUGGAUAUAUAGAAGCAGAAGUAAUUCCAGCAGAG
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viral_gRNA
Watts,2009
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE
UGGGAAAAUUGAAUUGGGCAAGUCAGAUUUAUGCAGGGAUUAAAGUAAGGCAAUUAUGUAAACUUCUUAGGGGAACCAAAGCACUAACAGAAGUAGUACCACUAACAGAAGAAGCAGAGCUAGAACUGGCAGAAAACAGGGAGAUUCUAAAAGAACCGGUACAUGGAGUGUAUUAUGACCCAUCAAAAGACUUAAUAGCAGAAAUACAGAAGCAGGGGCAAGGCCAAUGGACAUAUCAAAUUUAUCAAGAGCCAUUUAAAAAUCUGAAAACAGGAAAAUAUGCAAGAAUGAAGGGUGCCCACACUAAUGAUGUGAAACAAUUAACAGAGGCAGUACAAAAAAUAGCCACAGAAAGCAUAGUAAUAUGGGGAAAGACUCCUAAAUUUAAAUUACCCAUACAAAAGGAAACAUGGGAAGCAUGGUGGACAGAGUAUUGGCAAGCCACCUGGAUUCCUGAGUGGGAGUUUGUCAAUACCCCUCCCUUAGUGAAGUUAUGGUACCAGUUAGAGAAAGAACCCAUAAUAGGAGCAGAAACUUUCUAUGUAGAUGGGGCAGCCAAUAGGGAAACUAAAUUAGGAAAAGCAGGAUAUGUAACUGACA
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viral_gRNA
Watts,2009
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE
UAAAUGGAGAAAAUUAGUAGAUUUCAGAGAACUUAAUAAGAGAACUCAAGAUUUCUGGGAAGUUCAAUUAGGAAUACCACAUCCUGCAGGGUUAAAACAGAAAAAAUCAGUAACAGUACUGGAUGUGGGCGAUGCAUAUUUUUCAGUUCCCUUAGAUAAAGACUUCAGGAAGUAUACUGCAUUUACCAUACCUAGUAUAAACAAUGAGACACCAGGGAUUAGAUAUCAGUACAAUGUGCUUCCACAGGGAUGGAAAGGAUCACCAGCAAUAUUCCAGUGUAGCAUGACAAAAAUCUUAGAGCCUUUUAGAAAACAAAAUCCAGACAUAGUCAUCUAUCAAUACAUGGAUGAUUUGUAUGUAGGAUCUGACUUAGAAAUAGGGCAGCAUAGAACAAAAAUAGAGGAACUGAGACAACAUCUGUUGAGGUGGGGAUUUACCACACCAGACAAAAAACAUCAGAAAGAACCUCCAUUCCUUUGGAUGGGUUAUGAACUCCAUCCUGAUAAAUGGACAGUACAGCCUAUAGUGCUGCCAGAAAAGGACAGCUGGACUGUCAAUGACAUACAGAAAUUAGUGGGAAAAUUGAAUUGGGCAAGUCA
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viral_gRNA
Watts,2009
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE
CAGAAGACAGUGGCAAUGAGAGUGAAGGAGAAGUAUCAGCACUUGUGGAGAUGGGGGUGGAAAUGGGGCACCAUGCUCCUUGGGAUAUUGAUGAUCUGUAGUGCUACAGAAAAAUUGUGGGUCACAGUCUAUUAUGGGGUACCUGUGUGGAAGGAAGCAACCACCACUCUAUUUUGUGCAUCAGAUGCUAAAGCAUAUGAUACAGAGGUACAUAAUGUUUGGGCCACACAUGCCUGUGUACCCACAGACCCCAACCCACAAGAAGUAGUAUUGGUAAAUGUGACAGAAAAUUUUAACAUGUGGAAAAAUGACAUGGUAGAACAGAUGCAUGAGGAUAUAAUCAGUUUAUGGGAUCAAAGCCUAAAGCCAUGUGUAAAAUUAACCCCACUCUGUGUUAGUUUAAAGUGCACUGAUUUGAAGAAUGAUACUAAUACCAAUAGUAGUAGCGGGAGAAUGAUAAUGGAGAAAGGAGAGAUAAAAAACUGCUCUUUCAAUAUCAGCACAAGCAUAAGAGAUAAGGUGCAGAAAGAAUAUGCAUUCUUUUAUAAACUUGAUAUAGUACCAAUAGAUAAUACCAGCUAUAGGUUGAUAAGUUGUAAC
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viral_gRNA
Watts,2009
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE
CAAUAGCAGUCCUCUAUUGUGUGCAUCAAAGGAUAGAUGUAAAAGACACCAAGGAAGCCUUAGAUAAGAUAGAGGAAGAGCAAAACAAAAGUAAGAAAAAGGCACAGCAAGCAGCAGCUGACACAGGAAACAACAGCCAGGUCAGCCAAAAUUACCCUAUAGUGCAGAACCUCCAGGGGCAAAUGGUACAUCAGGCCAUAUCACCUAGAACUUUAAAUGCAUGGGUAAAAGUAGUAGAAGAGAAGGCUUUCAGCCCAGAAGUAAUACCCAUGUUUUCAGCAUUAUCAGAAGGAGCCACCCCACAAGAUUUAAAUACCAUGCUAAACACAGUGGGGGGACAUCAAGCAGCCAUGCAAAUGUUAAAAGAGACCAUCAAUGAGGAAGCUGCAGAAUGGGAUAGAUUGCAUCCAGUGCAUGCAGGGCCUAUUGCACCAGGCCAGAUGAGAGAACCAAGGGGAAGUGACAUAGCAGGAACUACUAGUACCCUUCAGGAACAAAUAGGAUGGAUGACACAUAAUCCACCUAUCCCAGUAGGAGAAAUCUAUAAAAGAUGGAUAAUCCUGGGAUUAAAUAAAAUAGUAAGAAUGUAUAGCCCUACCA
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viral_gRNA
Watts,2009