Datasets:
id
stringlengths 1
20
| gene_type
stringclasses 3
values | seq_len
int64 80
74.7k
| n_taxa
int64 38
48
| taxa
sequencelengths 38
48
| msa
sequencelengths 38
48
| tree
stringlengths 2.07k
2.65k
|
|---|---|---|---|---|---|---|
1441 | exon | 5,262 | 47 | ["BUCRH","LEPDI","TYTAL","CHLUN","PHALE","STRCA","PODCR","MELGA","MESUN","PTEGU","PELCR","CHAPE","NE(...TRUNCATED) | ["------------------------------AGGAGCAGCAGAGAATTATGGACAATTCTTCTGGGAAGATCAGCTTTAAGAGAACCAGCACAGATTGC(...TRUNCATED) | "(BUCRH:0.01597969330851430059,((((CATAU:0.00153484260644024288,FALPE:0.00636408134308526392)38:0.00(...TRUNCATED) |
9630 | exon | 1,497 | 46 | ["BALRE","CHLUN","PHACA","CARCR","EURHE","CALAN","CHAVO","APAVI","MELGA","CHAPE","MANVI","PODCR","CO(...TRUNCATED) | ["ATGGCTGGTGGCATTACTGATACAGGAGAGCTTTACTCTCCCTATGTTGGTCTGGTTTATATGTTCAACCTCATCGTTGGAACAGGAGCCCTGACCAT(...TRUNCATED) | "((((BUCRH:0.00594202857378181397,(CARCR:0.00235791068586320299,EGRGA:0.00118111647103039119)34:0.00(...TRUNCATED) |
11274 | exon | 636 | 47 | ["CHAPE","MELUN","TAUER","EURHE","PODCR","PHACA","CHAVO","EGRGA","TINMA","CALAN","BUCRH","MERNU","CU(...TRUNCATED) | ["TTGAAGACGTTGAAGCATGACAACATTGTAACTTACTTAGGAACTTGTCTGGAAGACAACATTTTAAGCATCTTCATGGAGTTTGTTCCTGGTGGCTC(...TRUNCATED) | "(CUCCA:0.01865422635032503926,(CHAPE:0.01571032864991061054,((PHACA:0.00300910513943683424,(APTFO:0(...TRUNCATED) |
1087 | exon | 2,697 | 46 | ["PHORU","MERNU","PHACA","MANVI","GALGA","COLLI","CHAVO","STRCA","GAVST","MELUN","APAVI","EURHE","CO(...TRUNCATED) | ["------------------------------------------------------------------------------------------------CA(...TRUNCATED) | "(PODCR:0.00923067615375816261,((FULGL:0.00632730288761907279,(PYGAD:0.00125171895032885486,APTFO:0.(...TRUNCATED) |
8755 | exon | 990 | 47 | ["MERNU","CHAVO","PODCR","FALPE","GALGA","CORBR","EURHE","CALAN","TAUER","OPHHO","CATAU","NESNO","MA(...TRUNCATED) | ["AGGTATTTTCACTTCTGTAAGCTTCCAGGAAGAGTTATGGGAATCCGCCTACTACGCTTCACTTCTGTGGTGATCATTGTCTTACTTCTTGTGGCAGG(...TRUNCATED) | "((FALPE:0.00338633892823051851,PHALE:0.00343170426286113330)35:0.00166495269389401270,(((CATAU:0.00(...TRUNCATED) |
9854 | exon | 594 | 48 | ["MELGA","TAUER","GAVST","CAPCA","HALLE","COLST","STRCA","CHAVO","PICPU","GALGA","PHACA","PELCR","AN(...TRUNCATED) | ["------------------------------------------------------------------------------------------TTCAAGGA(...TRUNCATED) | "(MELGA:0.00297044080543719825,((CARCR:0.00302872293284826193,(COLLI:0.00911132900933100259,((MELUN:(...TRUNCATED) |
11090 | exon | 3,792 | 46 | ["CORBR","CARCR","ANAPL","LEPDI","TYTAL","TINMA","GALGA","BUCRH","TAUER","GEOFO","PTEGU","APTFO","CH(...TRUNCATED) | ["ATGGCCTCACAAGTCTTGGTCTATCCACCATATGTTTATCAAACCCAGTCAAGTGCCTTTTGTAGTGTGAAGAAACTCAAACTAGAACCAAGCAGTTG(...TRUNCATED) | "(((((((TYTAL:0.02413069810682415620,(PHALE:0.01957590007822605782,(((CHAVO:0.01305320334733634305,((...TRUNCATED) |
1334 | exon | 1,365 | 44 | ["BALRE","CORBR","CATAU","EGRGA","BUCRH","PODCR","CUCCA","TYTAL","MESUN","GALGA","NIPNI","PELCR","PY(...TRUNCATED) | ["------------------------------------------------------------------------------------GGCTACCAGGTGAC(...TRUNCATED) | "(BALRE:0.00958313323152273390,((((((((PHORU:0.00588558215629372220,(PODCR:0.02060336038513245829,CO(...TRUNCATED) |
3507 | exon | 4,224 | 46 | ["GEOFO","NESNO","PHALE","EGRGA","HALAL","FALPE","OPHHO","TAUER","MELGA","MERNU","TYTAL","EURHE","CA(...TRUNCATED) | ["ATGGAGAACTACCACGTCCTGGAAGTGATCGGTGAAGGGTCCTTCGGGCGCGTGTACAAGGGGCGCCGGAGGCACAGCGCCCAGGTGGTGGCCTTGAA(...TRUNCATED) | "(GEOFO:0.08289736780961899643,((((TAUER:0.02126560547646320909,EURHE:0.02682156850661889316)50:0.02(...TRUNCATED) |
12083 | exon | 1,326 | 45 | ["EGRGA","FALPE","PELCR","TAEGU","PICPU","GEOFO","GALGA","MELGA","HALLE","CORBR","ACACH","BALRE","CA(...TRUNCATED) | ["ATGACTGACCCAGATGTCCTCACTGAAGTCCCAGCAGCTCTCAAACGCCTTGCCAAATATGTGGTGCGTGGCTTTTATGGCATTGAACATGCTTTGGC(...TRUNCATED) | "(((CALAN:0.01690342641922095573,CHAPE:0.00990896870467989840)46:0.00227899137531971776,OPHHO:0.0067(...TRUNCATED) |
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Avian Phylogenomic Dataset
14446 genes and corresponding gene trees of 48 avian species from the Avian Phylogenomic project.
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