Datasets:

viridono
/

CF-MS_Homo_sapiens_PPI

@@ -1,3 +1,112 @@
 # CF/MS Elution Profile PPI Dataset
 Includes processed data from several *Homo sapiens* protein co-fractionation mass spectrometry (CF/MS) experiments, as well as positive/negative protein-protein interaction (PPI) labels for each pair.
@@ -62,6 +171,4 @@ Wan, C., Borgeson, B., Phanse, S., Tu, F., Drew, K., Clark, G., Xiong, X., Kagan
 - IEX_Wan_2015_Hs_HCW_8.elut
 - IEX_Wan_2015_Hs_HCW_9.elut
 - IEX_Wan_2015_Hs_IEX_1.elut
-- IEX_Wan_2015_Hs_IEX_2.elut

+---
+size_categories:
+- 1M<n<10M
+pretty_name: CF/MS Homo sapiens Elution Profile PPI Dataset
+tags:
+- biology
+- chemistry
+dataset_summary: >-
+  Processed data from several *Homo sapiens* protein co-fractionation mass
+  spectrometry (CF/MS) experiments, as well as positive/negative protein-protein
+  interaction (PPI) labels for each pair. Collated, maintained by the Drew Lab at
+  University of Illinois at Chicago.
+citation_bibtex:
+- >-
+  @article{Connelly2018, title = {Analysis of Human Nuclear Protein Complexes by
+  Quantitative Mass Spectrometry Profiling}, volume = {18}, ISSN = {1615-9861},
+  url = {http://dx.doi.org/10.1002/pmic.201700427}, DOI =
+  {10.1002/pmic.201700427}, number = {11}, journal = {PROTEOMICS}, publisher =
+  {Wiley}, author = {Connelly,  Katelyn E. and Hedrick,  Victoria and Paschoal
+  Sobreira,  Tiago Jose and Dykhuizen,  Emily C. and Aryal,  Uma K.}, year =
+  {2018}, month = may}
+- >-
+  @article{Kirkwood2013, title = {Characterization of Native Protein Complexes
+  and Protein Isoform Variation Using Size-fractionation-based Quantitative
+  Proteomics}, volume = {12}, ISSN = {1535-9476}, url =
+  {http://dx.doi.org/10.1074/mcp.M113.032367}, DOI = {10.1074/mcp.m113.032367},
+  number = {12}, journal = {Molecular &amp; Cellular Proteomics}, publisher =
+  {Elsevier BV}, author = {Kirkwood,  Kathryn J. and Ahmad,  Yasmeen and
+  Larance,  Mark and Lamond,  Angus I.}, year = {2013}, month = dec, pages =
+  {3851–3873}}
+- >-
+  @article{Larance2016, title = {Global Membrane Protein Interactome Analysis
+  using In vivo Crosslinking and Mass Spectrometry-based Protein Correlation
+  Profiling}, volume = {15}, ISSN = {1535-9476}, url =
+  {http://dx.doi.org/10.1074/mcp.O115.055467}, DOI = {10.1074/mcp.o115.055467},
+  number = {7}, journal = {Molecular &amp; Cellular Proteomics}, publisher =
+  {Elsevier BV}, author = {Larance,  Mark and Kirkwood,  Kathryn J. and Tinti,
+  Michele and Brenes Murillo,  Alejandro and Ferguson,  Michael A.J. and
+  Lamond,  Angus I.}, year = {2016}, month = jul, pages = {2476–2490}}
+- >-
+  @article{Mallam2019, title = {Systematic Discovery of Endogenous Human
+  Ribonucleoprotein Complexes}, volume = {29}, ISSN = {2211-1247}, url =
+  {http://dx.doi.org/10.1016/j.celrep.2019.09.060}, DOI =
+  {10.1016/j.celrep.2019.09.060}, number = {5}, journal = {Cell Reports},
+  publisher = {Elsevier BV}, author = {Mallam,  Anna L. and Sae-Lee,  Wisath and
+  Schaub,  Jeffrey M. and Tu,  Fan and Battenhouse,  Anna and Jang,  Yu Jin and
+  Kim,  Jonghwan and Wallingford,  John B. and Finkelstein,  Ilya J. and
+  Marcotte,  Edward M. and Drew,  Kevin}, year = {2019}, month = oct, pages =
+  {1351--1368.e5}}
+- >-
+  @article{Moutaoufik2019, title = {Rewiring of the Human Mitochondrial
+  Interactome during Neuronal Reprogramming Reveals Regulators of the
+  Respirasome and Neurogenesis}, volume = {19}, ISSN = {2589-0042}, url =
+  {http://dx.doi.org/10.1016/j.isci.2019.08.057}, DOI =
+  {10.1016/j.isci.2019.08.057}, journal = {iScience}, publisher = {Elsevier BV},
+  author = {Moutaoufik,  Mohamed Taha and Malty,  Ramy and Amin,  Shahreen and
+  Zhang,  Qingzhou and Phanse,  Sadhna and Gagarinova,  Alla and Zilocchi,  Mara
+  and Hoell,  Larissa and Minic,  Zoran and Gagarinova,  Maria and Aoki,
+  Hiroyuki and Stockwell,  Jocelyn and Jessulat,  Matthew and Goebels,  Florian
+  and Broderick,  Kirsten and Scott,  Nichollas E. and Vlasblom,  James and
+  Musso,  Gabriel and Prasad,  Bhanu and Lamantea,  Eleonora and Garavaglia,
+  Barbara and Rajput,  Alex and Murayama,  Kei and Okazaki,  Yasushi and
+  Foster,  Leonard J. and Bader,  Gary D. and Cayabyab,  Francisco S. and Babu,
+  Mohan}, year = {2019}, month = sep, pages = {1114–1132}}
+- >-
+  @article{Wan2015, title = {Panorama of ancient metazoan macromolecular
+  complexes}, volume = {525}, ISSN = {1476-4687}, url =
+  {http://dx.doi.org/10.1038/nature14877}, DOI = {10.1038/nature14877}, number =
+  {7569}, journal = {Nature}, publisher = {Springer Science and Business Media
+  LLC}, author = {Wan,  Cuihong and Borgeson,  Blake and Phanse,  Sadhna and
+  Tu,  Fan and Drew,  Kevin and Clark,  Greg and Xiong,  Xuejian and Kagan,
+  Olga and Kwan,  Julian and Bezginov,  Alexandr and Chessman,  Kyle and Pal,
+  Swati and Cromar,  Graham and Papoulas,  Ophelia and Ni,  Zuyao and Boutz,
+  Daniel R. and Stoilova,  Snejana and Havugimana,  Pierre C. and Guo,  Xinghua
+  and Malty,  Ramy H. and Sarov,  Mihail and Greenblatt,  Jack and Babu,  Mohan
+  and Derry,  W. Brent and R. Tillier,  Elisabeth and Wallingford,  John B. and
+  Parkinson,  John and Marcotte,  Edward M. and Emili,  Andrew}, year = {2015},
+  month = sep, pages = {339–344}}
+citation_apa:
+- >-
+  Connelly, K. E., Hedrick, V., Paschoal Sobreira, T. J., Dykhuizen, E. C., &
+  Aryal, U. K. (2018). Analysis of Human Nuclear Protein Complexes by
+  Quantitative Mass Spectrometry Profiling. Proteomics, 18(11), e1700427.
+  https://doi.org/10.1002/pmic.201700427
+- Kirkwood, K. J., Ahmad, Y., Larance, M., & Lamond, A. I. (2013). Characterization of native protein complexes and protein isoform variation using size-fractionation-based quantitative proteomics. Molecular & cellular proteomics: MCP, 12(12), 3851–3873. https://doi.org/10.1074/mcp.M113.032367
+- Larance, M., Kirkwood, K. J., Tinti, M., Brenes Murillo, A., Ferguson, M. A., & Lamond, A. I. (2016). Global Membrane Protein Interactome Analysis using In vivo Crosslinking and Mass Spectrometry-based Protein Correlation Profiling. Molecular & cellular proteomics: MCP, 15(7), 2476–2490. https://doi.org/10.1074/mcp.O115.055467
+- >-
+  Mallam, A. L., Sae-Lee, W., Schaub, J. M., Tu, F., Battenhouse, A., Jang, Y.
+  J., Kim, J., Wallingford, J. B., Finkelstein, I. J., Marcotte, E. M., & Drew,
+  K. (2019). Systematic Discovery of Endogenous Human Ribonucleoprotein
+  Complexes. Cell reports, 29(5), 1351–1368.e5.
+  https://doi.org/10.1016/j.celrep.2019.09.060
+- >-
+  Moutaoufik, M. T., Malty, R., Amin, S., Zhang, Q., Phanse, S., Gagarinova, A.,
+  Zilocchi, M., Hoell, L., Minic, Z., Gagarinova, M., Aoki, H., Stockwell, J.,
+  Jessulat, M., Goebels, F., Broderick, K., Scott, N. E., Vlasblom, J., Musso,
+  G., Prasad, B., Lamantea, E., … Babu, M. (2019). Rewiring of the Human
+  Mitochondrial Interactome during Neuronal Reprogramming Reveals Regulators of
+  the Respirasome and Neurogenesis. iScience, 19, 1114–1132.
+  https://doi.org/10.1016/j.isci.2019.08.057
+- >-
+  Wan, C., Borgeson, B., Phanse, S., Tu, F., Drew, K., Clark, G., Xiong, X.,
+  Kagan, O., Kwan, J., Bezginov, A., Chessman, K., Pal, S., Cromar, G.,
+  Papoulas, O., Ni, Z., Boutz, D. R., Stoilova, S., Havugimana, P. C., Guo, X.,
+  Malty, R. H., … Emili, A. (2015). Panorama of ancient metazoan macromolecular
+  complexes. Nature, 525(7569), 339–344. https://doi.org/10.1038/nature14877
+---
 # CF/MS Elution Profile PPI Dataset
 Includes processed data from several *Homo sapiens* protein co-fractionation mass spectrometry (CF/MS) experiments, as well as positive/negative protein-protein interaction (PPI) labels for each pair.
 - IEX_Wan_2015_Hs_HCW_8.elut
 - IEX_Wan_2015_Hs_HCW_9.elut
 - IEX_Wan_2015_Hs_IEX_1.elut
+- IEX_Wan_2015_Hs_IEX_2.elut