| h--- | |
| tags: | |
| - spacy | |
| - token-classification | |
| language: | |
| - en | |
| model-index: | |
| - name: en_sdoh_roberta_cui | |
| results: | |
| - task: | |
| name: NER | |
| type: token-classification | |
| metrics: | |
| - name: NER Precision | |
| type: precision | |
| value: 0.8016997167 | |
| - name: NER Recall | |
| type: recall | |
| value: 0.7526595745 | |
| - name: NER F Score | |
| type: f_score | |
| value: 0.7764060357 | |
| widget: | |
| - text: "She lives in Oakland with her bf and commutes to work by bus." | |
| example_title: "SDOH NER example 1" | |
| - text: "There are some logistical barriers, as she lives in Oakland and works at the VA, commuting by bus" | |
| example_title: "SDOH NER example 2" | |
| - text: "I have also been very moody/tearful and generally depressed on a daily basis" | |
| example_title: "SDOH NER example 3" | |
| - text: "Patient is a 85 yo widow, who lives in section 8 housing. She is occasionally visited by her daughter and grandchildren." | |
| example_title: "SDOH NER example 4" | |
| --- | |
| RoBERTA based Social determinants of health NER with a standard ontology extension interface (SNOMED_CT and CUI) | |
| | Feature | Description | | |
| | --- | --- | | |
| | **Name** | `en_sdoh_roberta_cui` | | |
| | **Version** | `0.0.0` | | |
| | **spaCy** | `>=3.2.1,<3.3.0` | | |
| | **Default Pipeline** | `transformer`, `ner`, `sdoh_cui` | | |
| | **Components** | `transformer`, `ner`, `sdoh_cui` | | |
| | **Vectors** | 0 keys, 0 unique vectors (0 dimensions) | | |
| | **Sources** | n/a | | |
| | **License** | n/a | | |
| | **Author** | [Dima Lituiev]() | | |
| ### Label Scheme | |
| <details> | |
| <summary>View label scheme (52 labels for 1 components)</summary> | |
| | Component | Labels | | |
| | --- | --- | | |
| | **`ner`** | `Anxiety: GAD`, `Anxiety: Generalized Anxiety Disorder`, `Anxiety: Level of anxiety`, `Anxiety: NA`, `Anxiety: Signs and symptoms of anxiety`, `Anxiety: family hx: Anxiety state`, `Anxiety: hx of anxiety state`, `Depression: Family hx: Depression`, `Depression: Major depressive disorder`, `Depression: NA`, `Depression: PHQ`, `Depression: Symptoms of depression`, `Depression: hx of Depression`, `Financial_strain: Financial problem`, `Financial_strain: Financially secure`, `Financial_strain: NA`, `Financial_strain: Unable to afford medication`, `Food: Able to obtain food`, `Food: Fruit and vegetable intake`, `Food: NA`, `Housing: Homeless`, `Housing: Housing unsuited to needs`, `Housing: Marginally housed`, `Housing: NA`, `Housing: Stably housed`, `Housing: Subsidized housing`, `Housing: lives in facility`, `Insurance_status: Inadequate healthcare resources`, `Insurance_status: NA`, `Marital_or_partnership_status: Divorced`, `Marital_or_partnership_status: Engaged to be married`, `Marital_or_partnership_status: Married`, `Marital_or_partnership_status: NA`, `Marital_or_partnership_status: Partner`, `Marital_or_partnership_status: Partner relationship problem`, `Marital_or_partnership_status: Separated`, `Marital_or_partnership_status: Single person`, `Marital_or_partnership_status: Widowed`, `Social_isolation: At risk for loneliness`, `Social_isolation: Has social support`, `Social_isolation: Lives alone`, `Social_isolation: Lives with`, `Social_isolation: NA`, `Social_isolation: Personal relationship breakdown`, `Social_isolation: Social Isolation`, `Transportation: Has access to a car`, `Transportation: Has access to public transport vehicle`, `Transportation: NA`, `Transportation: Transportation problems`, `pain_and_disability: NA`, `pain_and_disability: Pain intensity rating scale, current`, `pain_and_disability: Pain intensity rating scale, worst` | | |
| </details> | |
| ### Accuracy | |
| | Type | Score | | |
| | --- | --- | | |
| | `ENTS_F` | 77.64 | | |
| | `ENTS_P` | 80.17 | | |
| | `ENTS_R` | 75.27 | | |
| | `TRANSFORMER_LOSS` | 37708138.10 | | |
| | `NER_LOSS` | 1444086.80 | |