metadata
tags:
- spacy
- token-classification
language:
- en
model-index:
- name: en_sdoh_roberta_cui
results:
- task:
name: NER
type: token-classification
metrics:
- name: NER Precision
type: precision
value: 0.8016997167
- name: NER Recall
type: recall
value: 0.7526595745
- name: NER F Score
type: f_score
value: 0.7764060357
widget:
- text: She lives in Oakland with her bf and commutes to work by bus.
example_title: SDOH NER example 1
- text: >-
There are some logistical barriers, as she lives in Oakland and works at
the VA, commuting by bus
example_title: SDOH NER example 2
- text: >-
I have also been very moody/tearful and generally depressed on a daily
basis
example_title: SDOH NER example 3
- text: >-
Patient is a 85 yo widow, who lives in section 8 housing. She is
occasionally visited by her daughter and grandchildren.
example_title: SDOH NER example 4
license: mit
RoBERTA based Social determinants of health NER with a standard ontology extension interface (SNOMED_CT and CUI)
| Feature | Description |
|---|---|
| Name | en_sdoh_roberta_cui |
| Version | 0.0.0 |
| spaCy | >=3.2.1,<3.3.0 |
| Default Pipeline | transformer, ner, sdoh_cui |
| Components | transformer, ner, sdoh_cui |
| Vectors | 0 keys, 0 unique vectors (0 dimensions) |
| Sources | n/a |
| License | n/a |
| Author | Dima Lituiev |
| Reference | Automatic Extraction of Social Determinants of Health from Medical Notes of Chronic Lower Back Pain Patients |
Label Scheme
View label scheme (52 labels for 1 components)
| Component | Labels |
|---|---|
ner |
Anxiety: GAD, Anxiety: Generalized Anxiety Disorder, Anxiety: Level of anxiety, Anxiety: NA, Anxiety: Signs and symptoms of anxiety, Anxiety: family hx: Anxiety state, Anxiety: hx of anxiety state, Depression: Family hx: Depression, Depression: Major depressive disorder, Depression: NA, Depression: PHQ, Depression: Symptoms of depression, Depression: hx of Depression, Financial_strain: Financial problem, Financial_strain: Financially secure, Financial_strain: NA, Financial_strain: Unable to afford medication, Food: Able to obtain food, Food: Fruit and vegetable intake, Food: NA, Housing: Homeless, Housing: Housing unsuited to needs, Housing: Marginally housed, Housing: NA, Housing: Stably housed, Housing: Subsidized housing, Housing: lives in facility, Insurance_status: Inadequate healthcare resources, Insurance_status: NA, Marital_or_partnership_status: Divorced, Marital_or_partnership_status: Engaged to be married, Marital_or_partnership_status: Married, Marital_or_partnership_status: NA, Marital_or_partnership_status: Partner, Marital_or_partnership_status: Partner relationship problem, Marital_or_partnership_status: Separated, Marital_or_partnership_status: Single person, Marital_or_partnership_status: Widowed, Social_isolation: At risk for loneliness, Social_isolation: Has social support, Social_isolation: Lives alone, Social_isolation: Lives with, Social_isolation: NA, Social_isolation: Personal relationship breakdown, Social_isolation: Social Isolation, Transportation: Has access to a car, Transportation: Has access to public transport vehicle, Transportation: NA, Transportation: Transportation problems, pain_and_disability: NA, pain_and_disability: Pain intensity rating scale, current, pain_and_disability: Pain intensity rating scale, worst |
Accuracy
| Type | Score |
|---|---|
ENTS_F |
77.64 |
ENTS_P |
80.17 |
ENTS_R |
75.27 |
TRANSFORMER_LOSS |
37708138.10 |
NER_LOSS |
1444086.80 |