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CRISPRTool

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History: 150 commits

supercat666's picture

fix cas9 and cas12 output

bc641c8 5 months ago

.idea
added cas9 off 9 months ago
cas12_model
upload cas12_bilstm h5 file (#9) 5 months ago
cas13_model
Updated cas13 model 10 months ago
cas9_model
upload cas9_att h5 file (#10) 5 months ago
transcripts
Upload gencode.v19.pc_transcripts.fa.gz 10 months ago
.gitattributes

1.83 kB

qingyang's new cas12 5 months ago
Human_genes_HUGO_02242024_annotation.txt

26.3 MB
LFS

Upload Human_genes_HUGO_02242024_annotation.txt 7 months ago
README.md

253 Bytes

Update README.md 10 months ago
SRR25934512.filter.snps.indels.vcf

58.2 MB
LFS

qingyang's new data 5 months ago
SRR25934512.filter.snps.indels.vcf.gz

11 MB
LFS

qingyang's new data 5 months ago
SRR25934512.filter.snps.indels.vcf.gz.tbi

407 kB

qingyang's new data 5 months ago
app.py

32.7 kB

fix cas9 and cas12 output 5 months ago
calibration_params.pkl
Detected Pickle imports (11)
- "pandas.core.indexes.base._new_Index",
- "pandas._libs.internals._unpickle_block",
- "pandas.core.internals.managers.BlockManager",
- "numpy.core.multiarray._reconstruct",
- "builtins.slice",
- "pandas.core.indexes.base.Index",
- "numpy.dtype",
- "pandas.core.indexes.numeric.Int64Index",
- "pandas.core.frame.DataFrame",
- "numpy.core.numeric._frombuffer",
- "numpy.ndarray"
How to fix it?
885 Bytes
LFS

Updated cas13 model 10 months ago
cas12.py

9.18 kB

Update cas12.py (#7) 6 months ago
cas12lstm.py

9.6 kB

fix cas9 and cas12 output 5 months ago
cas12lstmvcf.py

10.6 kB

Update cas12lstmvcf.py (#14) 5 months ago
cas9att.py

11.5 kB

fix cas9 and cas12 output 5 months ago
cas9attvcf.py

15 kB

Update cas9attvcf.py (#12) 5 months ago
cas9off.py

5.41 kB

fixed cas9off 9 months ago
cas9on.py

8.12 kB

change cas9 5 months ago
crisprTool.md

182 Bytes

fix 7 months ago
requirements.txt

165 Bytes

new enviroment 5 months ago
scoring_params.pkl
Detected Pickle imports (11)
- "pandas.core.indexes.base._new_Index",
- "pandas._libs.internals._unpickle_block",
- "pandas.core.indexes.range.RangeIndex",
- "pandas.core.internals.managers.BlockManager",
- "numpy.core.multiarray._reconstruct",
- "builtins.slice",
- "pandas.core.indexes.base.Index",
- "numpy.dtype",
- "pandas.core.frame.DataFrame",
- "numpy.core.numeric._frombuffer",
- "numpy.ndarray"
How to fix it?
706 Bytes
LFS

Updated cas13 model 10 months ago
tiger.py

17.2 kB

Updated cas13 model 10 months ago