README.md

SamGIS

todo

1. export output to mask: OK local, OK aws lambda
2. resolve model paths: OK local
3. inference:
4. from mask to json (rasterio + geopandas, check for re-projection to EPSG_4326)
5. check mandatory dependencies
6. check for alternative python interpreters

Build instructions

Build the docker image:

# clean any old active containers
docker stop $(docker ps -a -q); docker rm $(docker ps -a -q)

# build the base docker image with the docker aws repository tag
docker build . -f dockerfiles/dockerfile-lambda-gdal-runner --tag 686901913580.dkr.ecr.eu-west-1.amazonaws.com/lambda-gdal-runner

# OPTIONAL: to build the lambda-gdal-runner image on a x86 machine use the build arg `RIE="https://github.com/aws/aws-lambda-runtime-interface-emulator/releases/latest/download/aws-lambda-rie"`:
docker build . -f dockerfiles/dockerfile-lambda-gdal-runner --build-arg RIE="https://github.com/aws/aws-lambda-runtime-interface-emulator/releases/latest/download/aws-lambda-rie" --tag 686901913580.dkr.ecr.eu-west-1.amazonaws.com/lambda-gdal-runner --progress=plain

# build the final docker image
docker build . -f dockerfiles/dockerfile-lambda-fastsam-api --tag 686901913580.dkr.ecr.eu-west-1.amazonaws.com/lambda-fastsam-api

Run the container (keep it on background) and show logs

docker tag 686901913580.dkr.ecr.eu-west-1.amazonaws.com/lambda-fastsam-api:latest lambda-fastsam-api;docker run  -d --name lambda-fastsam-api -p 8080:8080 lambda-fastsam-api; docker logs -f lambda-fastsam-api

Test it with curl:

URL=http://localhost:8080/2015-03-31/functions/function/invocations
curl -X 'POST' \
  ${URL} \
  -H 'accept: application/json' \
  -d '{}'

Publish the aws lambda

1. Login on aws ECR with the correct aws profile (details on ECR page)

   aws --profile alessandrotrinca_hotmail_aws_console_ec2_lambda ecr get-login-password --region eu-west-1 | docker login --username AWS --password-stdin 686901913580.dkr.ecr.eu-west-1.amazonaws.com
   

2. Build and tag the docker images, then push them:

   docker push 686901913580.dkr.ecr.eu-west-1.amazonaws.com/lambda-gdal-runner:latest
   docker push 686901913580.dkr.ecr.eu-west-1.amazonaws.com/lambda-fastsam-api:latest
   

3. It's possible to publish a new aws lambda version from cmd or from lambda page

Dependencies installation and local tests

The docker build process needs only the classic requirements.txt (here renamed to requirements_dockerfile.txt), instead for local development and sphinx-docs build there is Pipfile (sphinx docs is hosted on Cloudflare Pages).

Tests

Tests are defined in the tests folder in this project. Use PIP to install the test dependencies and run tests.

python -m pytest --cov=src --cov-report=term-missing && coverage html

Update the static documentation with sphinx

Run the sphinx-apidoc: it's a tool for automatic generation of Sphinx sources that, using the autodoc extension, document a whole package in the style of other automatic API documentation tools. See the documentation page for details. Run the command from the project root:

# missing docs folder (run from project root)
cd docs && sphinx-quickstart -p SamGIS -a "alessandro trinca tornidor" -r 1.0.0 -l python --master index

# update docs folder (from project root)
sphinx-apidoc -f -o docs src

Then it's possible to generate the HTML pages

cd docs && make html && ../

# to clean old files
cd docs && make clean html && cd ../

The static documentation it's now ready at the path docs/_build/html/index.html.