README.md

# SamGIS

## todo

1. export output to mask: OK local, OK aws lambda
2. resolve model paths: OK local
3. inference: 
4. from mask to json (rasterio + geopandas, check for re-projection to EPSG_4326)
5. check mandatory dependencies
6. check for alternative python interpreters

## Build instructions

Build the docker image:

```bash
# clean any old active containers
docker stop $(docker ps -a -q); docker rm $(docker ps -a -q)

# build the base docker image with the docker aws repository tag
docker build . -f dockerfiles/dockerfile-lambda-gdal-runner --tag 686901913580.dkr.ecr.eu-west-1.amazonaws.com/lambda-gdal-runner

# OPTIONAL: to build the lambda-gdal-runner image on a x86 machine use the build arg `RIE="https://github.com/aws/aws-lambda-runtime-interface-emulator/releases/latest/download/aws-lambda-rie"`:
docker build . -f dockerfiles/dockerfile-lambda-gdal-runner --build-arg RIE="https://github.com/aws/aws-lambda-runtime-interface-emulator/releases/latest/download/aws-lambda-rie" --tag 686901913580.dkr.ecr.eu-west-1.amazonaws.com/lambda-gdal-runner --progress=plain

# build the final docker image
docker build . -f dockerfiles/dockerfile-lambda-fastsam-api --tag 686901913580.dkr.ecr.eu-west-1.amazonaws.com/lambda-fastsam-api
```

Run the container (keep it on background) and show logs

```bash
docker tag 686901913580.dkr.ecr.eu-west-1.amazonaws.com/lambda-fastsam-api:latest lambda-fastsam-api;docker run  -d --name lambda-fastsam-api -p 8080:8080 lambda-fastsam-api; docker logs -f lambda-fastsam-api
```

Test it with curl:

```bash
URL=http://localhost:8080/2015-03-31/functions/function/invocations
curl -X 'POST' \
  ${URL} \
  -H 'accept: application/json' \
  -d '{}'
```

## Publish the aws lambda
1. Login on aws ECR with the correct aws profile (details on [ECR page](https://eu-west-1.console.aws.amazon.com/ecr/repositories/private/686901913580/surferdtm-prediction-api?region=eu-west-1))
    ```
    aws --profile alessandrotrinca_hotmail_aws_console_ec2_lambda ecr get-login-password --region eu-west-1 | docker login --username AWS --password-stdin 686901913580.dkr.ecr.eu-west-1.amazonaws.com
    ```
2. Build and tag the docker images, then push them:
    ```
    docker push 686901913580.dkr.ecr.eu-west-1.amazonaws.com/lambda-gdal-runner:latest
    docker push 686901913580.dkr.ecr.eu-west-1.amazonaws.com/lambda-fastsam-api:latest
    ```
3. It's possible to publish a new aws lambda version from cmd or from lambda page


## Tests

Tests are defined in the `tests` folder in this project. Use PIP to install the test dependencies and run tests.

```bash
python -m pytest --cov=src --cov-report=term-missing && coverage html
```

## Update the static documentation with sphinx

Run the sphinx-apidoc: it's a tool for automatic generation of Sphinx sources that, using the autodoc
extension, document a whole package in the style of other automatic API documentation tools. See the 
[documentation page](https://www.sphinx-doc.org/en/master/man/sphinx-apidoc.html) for details.
Run the command from the project root:

```bash
# missing docs folder (run from project root)
cd docs && sphinx-quickstart -p SamGIS -a "alessandro trinca tornidor" -r 1.0.0 -l python --master index

# update docs folder (from project root)
sphinx-apidoc -f -o docs src
```

Then it's possible to generate the HTML pages 
```bash
cd docs && make html
```

The static documentation it's now ready at the path `_build/html/index.html`.