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accelerate # required by HayenaDNA datasets pandas polars numpy matplotlib scipy shap scikit-learn skorch==1.0.0 six hyperopt requests pyyaml Bio plotly Levenshtein # pytorch captum torch==2.4.0 torchvision torchaudio torchsummary torcheval pydot pydotplus PySide2 # matplotlib dependency on ubuntu. you may need sth else for other os/env setup torchviz gReLU # luckily now available in pip! # gReLU @ git+https://github.com/Genentech/gReLU # @623fee8023aabcef89f0afeedbeafff4b71453af # lightning[extra] # cz I got a stupid warning in the console logs torchmetrics python-dotenv |