Update Dockerfile

Dockerfile

@@ -1,52 +1,49 @@
-# read the doc: https://huggingface.co/docs/hub/spaces-sdks-docker
-# you will also find guides on how best to write your Dockerfile
-
-FROM continuumio/anaconda3:2024.02-1
-
-WORKDIR /code
-
-COPY ./requirements.txt /code/requirements.txt
-
-RUN apt-get update
-
-RUN apt-get install gcc -y
-
-RUN pip install -r /code/requirements.txt
-
-RUN conda install pytorch::faiss-gpu --yes
-
-# Download foldseek
-RUN wget 'https://drive.usercontent.google.com/download?id=1B_9t3n_nlj8Y3Kpc_mMjtMdY0OPYa7Re&export=download&authuser=0' -O /tmp/foldseek
-RUN chmod +x /tmp/foldseek
-
-# Download ProTrek model
-RUN huggingface-cli download westlake-repl/ProTrek_650M_UniRef50 --repo-type model --local-dir /tmp/ProTrek_650M_UniRef50
-
-# Download ProTrek model
-RUN huggingface-cli download westlake-repl/faiss_index_ProTrek_650M_UniRef50  --repo-type dataset  --local-dir /tmp/faiss_index_ProTrek_650M_UniRef50
-
-# Set up a new user named "user" with user ID 1000
-RUN useradd -m -u 1000 user
-
-# Set home to the user's home directory
-ENV HOME=/home/user \
-    PYTHONPATH=$HOME/app \
-    PYTHONUNBUFFERED=1 \
-    GRADIO_ALLOW_FLAGGING=never \
-    GRADIO_NUM_PORTS=1 \
-    GRADIO_SERVER_NAME=0.0.0.0 \
-    GRADIO_THEME=huggingface \
-    SYSTEM=spaces
-
-# Set the working directory to the user's home directory
-WORKDIR $HOME/app
-
-# Copy the current directory contents into the container at $HOME/app setting the owner to the user
-COPY --chown=user . $HOME/app
-
-#COPY . .
-
-CMD ["python", "run.py"]
-
-"MKALIVLGLVLLSVTVQGKVFERCELARTLKRLGMDGYRGIALANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV"
-"MKALIVLGLVLLSVTVQGKVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV"
+# read the doc: https://huggingface.co/docs/hub/spaces-sdks-docker
+# you will also find guides on how best to write your Dockerfile
+
+FROM continuumio/anaconda3:2024.02-1
+
+WORKDIR /code
+
+COPY ./requirements.txt /code/requirements.txt
+
+RUN apt-get update
+
+RUN apt-get install gcc -y
+
+RUN pip install -r /code/requirements.txt
+
+RUN conda install pytorch::faiss-gpu --yes
+
+# Download foldseek
+RUN wget 'https://drive.usercontent.google.com/download?id=1B_9t3n_nlj8Y3Kpc_mMjtMdY0OPYa7Re&export=download&authuser=0' -O /tmp/foldseek
+RUN chmod +x /tmp/foldseek
+
+# Download ProTrek model
+RUN huggingface-cli download westlake-repl/ProTrek_650M_UniRef50 --repo-type model --local-dir /tmp/ProTrek_650M_UniRef50
+
+# Download ProTrek faiss index
+RUN huggingface-cli download westlake-repl/ProTrek-faiss-index  --repo-type dataset  --local-dir /tmp/faiss_index_ProTrek_650M_UniRef50
+
+# Set up a new user named "user" with user ID 1000
+RUN useradd -m -u 1000 user
+
+# Set home to the user's home directory
+ENV HOME=/home/user \
+    PYTHONPATH=$HOME/app \
+    PYTHONUNBUFFERED=1 \
+    GRADIO_ALLOW_FLAGGING=never \
+    GRADIO_NUM_PORTS=1 \
+    GRADIO_SERVER_NAME=0.0.0.0 \
+    GRADIO_THEME=huggingface \
+    SYSTEM=spaces
+
+# Set the working directory to the user's home directory
+WORKDIR $HOME/app
+
+# Copy the current directory contents into the container at $HOME/app setting the owner to the user
+COPY --chown=user . $HOME/app
+
+#COPY . .
+
+CMD ["python", "run.py"]