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def create_outlier_mask(df, target_var, number_of_stds, grouping_cols=None): """ Create a row-wise mask to filter-out outliers based on target_var. Optionally allows you to filter outliers by group for hier. data. """ def flag_outliers_within_groups(df, target_var, grouping_cols, number_of_stds): groups = df.groupby(grouping_cols) means = groups[target_var].transform('mean') stds = groups[target_var].transform('std') upper_bound = means + stds * number_of_stds lower_bound = means - stds * number_of_stds return df[target_var].between(lower_bound, upper_bound) def flag_outliers_without_groups(df, target_var, number_of_stds): mean_val = df[target_var].mean() std_val = df[target_var].std() upper_bound = (mean_val + (std_val * number_of_stds)) lower_bound = (mean_val - (std_val * number_of_stds)) return (df[target_var] > lower_bound) & (df[target_var] < upper_bound) if grouping_cols: mask = flag_outliers_within_groups( df=df, target_var=target_var, number_of_stds=number_of_stds, grouping_cols=grouping_cols ) else: mask = flag_outliers_without_groups( df=df, target_var=target_var, number_of_stds=number_of_stds ) return mask
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def binary_search(x,l): """ Esse algorítmo é o algorítmo de busca binária, mas ele retorna qual o índice o qual devo colocar o elemento para que a lista permaneça ordenada. Input: elemento x e lista l Output: Índice em que o elemento deve ser inserido para manter a ordenação da lista """ lo = 0 # Cota inferior inicial (Lower bound) up = len(l) # Cota superior inicial (Upper bound) while lo < up: mid = int((lo+up)/2) #Ponto Médio if l[mid] < x: lo = mid + 1 else: up = mid return up
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import os import requests def get_port_use_db(): """Gets the services that commonly run on certain ports :return: dict[port] = service :rtype: dict """ url = "http://www.iana.org/assignments/service-names-port-numbers/service-names-port-numbers.csv" db_path = "/tmp/port_db" if not os.path.isfile(db_path): with requests.get(url, stream=True) as r: r.raise_for_status() with open(db_path, "wb") as f: for chunk in r.iter_content(chunk_size=8192): if chunk: f.write(chunk) db = {} with open(db_path) as f: content = f.read() for line in content.split("\n")[1:]: if line: parts = line.split(",") if len(parts) >= 4: service = parts[0] port = parts[1] if service: db[port] = service return db
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def generate_config(context): """ Generate the deployment configuration. """ resources = [] name = context.properties.get('name', context.env['name']) resources = [ { 'name': name, 'type': 'appengine.v1.version', 'properties': context.properties } ] outputs = [ { 'name': 'name', 'value': '$(ref.{}.name)'.format(name) }, { 'name': 'createTime', 'value': '$(ref.{}.createTime)'.format(name) }, { 'name': 'versionUrl', 'value': '$(ref.{}.versionUrl)'.format(name) } ] return {'resources': resources, 'outputs': outputs}
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def remove_end_same_as_start_transitions(df, start_col, end_col): """Remove rows corresponding to transitions where start equals end state. Millington 2009 used a methodology where if a combination of conditions didn't result in a transition, this would be represented in the model by specifying a transition with start and end state being the same, and a transition time of 0 years. AgroSuccess will handle 'no transition' rules differently, so these dummy transitions should be excluded. """ def start_different_to_end(row): if row[start_col] == row[end_col]: return False else: return True return df[df.apply(start_different_to_end, axis=1)]
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def sieve(iterable, inspector, *keys): """Separates @iterable into multiple lists, with @inspector(item) -> k for k in @keys defining the separation. e.g., sieve(range(10), lambda x: x % 2, 0, 1) -> [[evens], [odds]] """ s = {k: [] for k in keys} for item in iterable: k = inspector(item) if k not in s: raise KeyError(f"Unexpected key <{k}> found by inspector in sieve.") s[inspector(item)].append(item) return [s[k] for k in keys]
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def divide(x, y): """A version of divide that also rounds.""" return round(x / y)
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def dot(u, v): """ Returns the dot product of the two vectors. >>> u1 = Vec([1, 2]) >>> u2 = Vec([1, 2]) >>> u1*u2 5 >>> u1 == Vec([1, 2]) True >>> u2 == Vec([1, 2]) True """ assert u.size == v.size sum = 0 for index, (compv, compu) in enumerate(zip(u.store,v.store)): sum = sum + compv * compu return sum
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def fix_lng_degrees(lng: float) -> float: """ For a lng degree outside [-180;180] return the appropriate degree assuming -180 = 180°W and 180 = 180°E. """ sign = 1 if lng > 0 else -1 lng_adj = (abs(lng) % 360) * sign if lng_adj > 180: return (lng_adj % 180) - 180 elif lng_adj < -180: return lng_adj % 180 return lng_adj
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import typing import inspect def resolve_lookup( context: dict, lookup: str, call_functions: bool = True ) -> typing.Any: """ Helper function to extract a value out of a context-dict. A lookup string can access attributes, dict-keys, methods without parameters and indexes by using the dot-accessor (e.g. ``person.name``) This is based on the implementation of the variable lookup of the django template system: https://github.com/django/django/blob/master/django/template/base.py """ current = context for bit in lookup.split("."): try: current = current[bit] except (TypeError, AttributeError, KeyError, ValueError, IndexError): try: current = getattr(current, bit) except (TypeError, AttributeError): # Reraise if the exception was raised by a @property if not isinstance(current, dict) and bit in dir(current): raise try: # list-index lookup current = current[int(bit)] except ( IndexError, # list index out of range ValueError, # invalid literal for int() KeyError, # current is a dict without `int(bit)` key TypeError, ): # unsubscriptable object return None # raise LookupError( # "Failed lookup for key " "[%s] in %r", (bit, current) # ) # missing attribute if callable(current) and call_functions: try: # method call (assuming no args required) current = current() except TypeError: signature = inspect.signature(current) # type: ignore try: signature.bind() except TypeError: # arguments *were* required pass # but we continue because we might use an attribute on the object instead of calling it else: raise return current
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import os import subprocess def linux_gcc_name(): """Returns the name of the `gcc` compiler. Might happen that we are cross-compiling and the compiler has a longer name. Args: None Returns: str: Name of the `gcc` compiler or None """ cc_env = os.getenv('CC') if cc_env is not None: if subprocess.Popen([cc_env, "--version"], stdout=subprocess.DEVNULL): return cc_env return "gcc" if subprocess.Popen(["gcc", "--version"], stdout=subprocess.DEVNULL) else None
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def old_func5(self, x): """Summary. Bizarre indentation. """ return x
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def get_str_cmd(cmd_lst): """Returns a string with the command to execute""" params = [] for param in cmd_lst: if len(param) > 12: params.append('"{p}"'.format(p=param)) else: params.append(param) return ' '.join(params)
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def calculate_score(arr): """Inside calculate_score() check for a blackjack (a hand with only 2 cards: ace + 10) and return 0 instead of the actual score. 0 will represent a blackjack in our game. It check for an 11 (ace). If the score is already over 21, remove the 11 and replace it with a 1""" if sum(arr) == 21 and len(arr) == 2: return 0 # represents blackjack if sum(arr) > 21 and 11 in arr: arr.remove(11) arr.append(1) return sum(arr)
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def calculate_phase(time, period): """Calculates phase based on period. Parameters ---------- time : type Description of parameter `time`. period : type Description of parameter `period`. Returns ------- list Orbital phase of the object orbiting the star. """ return (time % period) / period
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import os def _check_shebang(filename, disallow_executable): """Return 0 if the filename's executable bit is consistent with the presence of a shebang line and the shebang line is in the whitelist of acceptable shebang lines, and 1 otherwise. If the string "# noqa: shebang" is present in the file, then this check will be ignored. """ with open(filename, mode='r', encoding='utf8') as file: content = file.read() if "# noqa: shebang" in content: # Ignore. return 0 is_executable = os.access(filename, os.X_OK) if is_executable and disallow_executable: print("ERROR: {} is executable, but should not be".format(filename)) print("note: fix via chmod a-x '{}'".format(filename)) return 1 lines = content.splitlines() assert len(lines) > 0, f"Empty file? {filename}" shebang = lines[0] has_shebang = shebang.startswith("#!") if is_executable and not has_shebang: print("ERROR: {} is executable but lacks a shebang".format(filename)) print("note: fix via chmod a-x '{}'".format(filename)) return 1 if has_shebang and not is_executable: print("ERROR: {} has a shebang but is not executable".format(filename)) print("note: fix by removing the first line of the file") return 1 shebang_whitelist = { "bash": "#!/bin/bash", "python": "#!/usr/bin/env python3", } if has_shebang and shebang not in list(shebang_whitelist.values()): print(("ERROR: shebang '{}' in the file '{}' is not in the shebang " "whitelist").format(shebang, filename)) for hint, replacement_shebang in shebang_whitelist.items(): if hint in shebang: print(("note: fix by replacing the shebang with " "'{}'").format(replacement_shebang)) return 1 return 0
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def deconstruct_DMC(G, alpha, beta): """Deconstruct a DMC graph over a single step.""" # reverse complementation if G.has_edge(alpha, beta): G.remove_edge(alpha, beta) w = 1 else: w = 0 # reverse mutation alpha_neighbors = set(G.neighbors(alpha)) beta_neighbors = set(G.neighbors(beta)) x = len(alpha_neighbors & beta_neighbors) y = len(alpha_neighbors | beta_neighbors) for neighbor in alpha_neighbors: G.add_edge(beta, neighbor) # reverse duplication G.remove_node(alpha) return (w, x, y)
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def metadata_columns(request, metadata_column_headers): """Make a metadata column header and column value dictionary.""" template = 'val{}' columns = {} for header in metadata_column_headers: columns[header] = [] for i in range(0, request.param): columns[header].append(template.format(i)) return columns
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def get_nodeweight(obj): """ utility function that returns a node class and it's weight can be used for statistics to get some stats when NO Advanced Nodes are available """ k = obj.__class__.__name__ if k in ('Text',): return k, len(obj.caption) elif k == 'ImageLink' and obj.isInline(): return 'InlineImageLink', 1 return k, 1
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def CMYtoRGB(C, M, Y): """ convert CMY to RGB color :param C: C value (0;1) :param M: M value (0;1) :param Y: Y value (0;1) :return: RGB tuple (0;255) """ RGB = [(1.0 - i) * 255.0 for i in (C, M, Y)] return tuple(RGB)
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from typing import Any import json def json_safe(arg: Any): """ Checks whether arg can be json serialized and if so just returns arg as is otherwise returns none """ try: json.dumps(arg) return arg except: return None
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import math def h(q): """Binary entropy func""" if q in {0, 1}: return 0 return (q * math.log(1 / q, 2)) + ((1 - q) * math.log(1 / (1 - q), 2))
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from typing import IO def write_file(filename: str, content: str, mode: str = "w") -> IO: """Save content to a file, overwriting it by default.""" with open(filename, mode) as file: file.write(content) return file
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def get_list(_list, persistent_attributes): """ Check if the user supplied a list and if its a custom list, also check for for any saved lists :param _list: User supplied list :param persistent_attributes: The persistent attribs from the app :return: The list name , If list is custom or not """ if _list is not None and (_list.lower() != 'watchlist' and _list.lower() != 'watch list'): return _list, True else: # if default isnt set use watchlist if "list" in persistent_attributes: if persistent_attributes["list"] != 'watchlist' and persistent_attributes["list"] != 'watch list': _list = persistent_attributes["list"] _usecustomlist = True else: _list = 'watchlist' _usecustomlist = False else: _list = 'watchlist' _usecustomlist = False return _list, _usecustomlist
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import socket import re def inode_for_pid_sock(pid, addr, port): """ Given a pid that is inside a network namespace, and the address/port of a LISTEN socket, find the inode of the socket regardless of which pid in the ns it's attached to. """ expected_laddr = '%02X%02X%02X%02X:%04X' % (addr[3], addr[2], addr[1], addr[0], socket.htons(port)) for line in open('/proc/{}/net/tcp'.format(pid), 'r').readlines(): parts = re.split(r'\s+', line.strip()) local_addr = parts[1] remote_addr = parts[2] if remote_addr != '00000000:0000': continue # not a listen socket if local_addr == expected_laddr: return int(parts[9])
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def nicer(string): """ >>> nicer("qjhvhtzxzqqjkmpb") True >>> nicer("xxyxx") True >>> nicer("uurcxstgmygtbstg") False >>> nicer("ieodomkazucvgmuy") False """ pair = False for i in range(0, len(string) - 3): for j in range(i + 2, len(string) - 1): if string[i:i + 2] == string[j:j + 2]: pair = True break if not pair: return False for i in range(0, len(string) - 2): if string[i] == string[i + 2]: return True return False
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from typing import Union def multiple_choice(value: Union[list, str]): """ Handle a single string or list of strings """ if isinstance(value, list): # account for this odd [None] value for empty multi-select fields if value == [None]: return None # we use string formatting to handle the possibility that the list contains ints return ", ".join([f"{val}" for val in value]) return value
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def CleanFloat(number, locale = 'en'): """\ Return number without decimal points if .0, otherwise with .x) """ try: if number % 1 == 0: return str(int(number)) else: return str(float(number)) except: return number
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def getGlobals(): """ :return: (dict) """ return globals()
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def arith_relop(a, t, b): """ arith_relop(a, t, b) This is (arguably) a hack. Represents each function as an integer 0..5. """ return [(t == 0).implies(a < b), (t == 1).implies(a <= b), (t == 2).implies(a == b), (t == 3).implies(a >= b), (t == 4).implies(a > b), (t == 5).implies(a != b) ]
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import collections def get_duplicates(lst): """Return a list of the duplicate items in the input list.""" return [item for item, count in collections.Counter(lst).items() if count > 1]
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import math def regular_poly_circ_rad_to_side_length(n_sides, rad): """Find side length that gives regular polygon with `n_sides` sides an equivalent area to a circle with radius `rad`.""" p_n = math.pi / n_sides return 2 * rad * math.sqrt(p_n * math.tan(p_n))
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def dbl_colour(days): """ Return a colour corresponding to the number of days to double :param days: int :return: str """ if days >= 28: return "orange" elif 0 < days < 28: return "red" elif days < -28: return "green" else: return "yellow"
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def read_requirements_file(path): """ reads requirements.txt file """ with open(path) as f: requires = [] for line in f.readlines(): if not line: continue requires.append(line.strip()) return requires
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import threading def thread_it(obj, timeout = 10): """ General function to handle threading for the physical components of the system. """ thread = threading.Thread(target = obj.run()) thread.start() # Run the 'run' function in the obj obj.ready.wait(timeout = timeout) # Clean up thread.join() obj.ready.clear() return None
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def obj_setclass(this, klass): """ set Class for `this`!! """ return this.setclass(klass)
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def trimAlphaNum(value): """ Trims alpha numeric characters from start and ending of a given value >>> trimAlphaNum(u'AND 1>(2+3)-- foobar') u' 1>(2+3)-- ' """ while value and value[-1].isalnum(): value = value[:-1] while value and value[0].isalnum(): value = value[1:] return value
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def _median(data): """Return the median (middle value) of numeric data. When the number of data points is odd, return the middle data point. When the number of data points is even, the median is interpolated by taking the average of the two middle values: >>> median([1, 3, 5]) 3 >>> median([1, 3, 5, 7]) 4.0 """ data = sorted(data) n = len(data) if n == 0: raise ValueError("no median for empty data") if n % 2 == 1: return data[n // 2] else: i = n // 2 return (data[i - 1] + data[i]) / 2
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def generate_styles(): """ Create custom style rules """ # Set navbar so it's always at the top css_string = "#navbar-top{background-color: white; z-index: 100;}" # Set glossdef tip css_string += "a.tip{text-decoration:none; font-weight:bold; cursor:pointer; color:#2196F3;}" css_string += "a.tip:hover{position: relative;border-bottom: 1px dashed #2196F3;}" # Set glossdef span css_string += "a.tip span{display: none;background-color: white;font-weight: normal;border:1px solid gray;width: 250px;}" css_string += "a.tip:hover span{display: block;position: absolute;z-index: 100;padding: 5px 15px;}" return css_string
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def kilometers_to_miles(dist_km): """Converts km distance to miles PARAMETERS ---------- dist_km : float Scalar distance in kilometers RETURNS ------- dist_mi : float Scalar distance in kilometers """ return dist_km / 1.609344
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import requests import time def SolveCaptcha(api_key, site_key, url): """ Uses the 2Captcha service to solve Captcha's for you. Captcha's are held in iframes; to solve the captcha, you need a part of the url of the iframe. The iframe is usually inside a div with id=gRecaptcha. The part of the url we need is the query parameter k, this is called the site_key: www.google.com/recaptcha/api2/anchor?ar=1&k=6LcleDIUAAAAANqkex-vX88sMHw8FXuJQ3A4JKK9&co=aHR0cHM6Ly93d3cuZGljZS5jb206NDQz&hl=en&v=oqtdXEs9TE9ZUAIhXNz5JBt_&size=normal&cb=rpcg9w84syix k=6LcleDIUAAAAANqkex-vX88sMHw8FXuJQ3A4JKK9 Here the site_key is 6LcleDIUAAAAANqkex-vX88sMHw8FXuJQ3A4JKK9 You also need to supply the url of the current page you're on. This function will return a string with the response key from captcha validating the test. This needs to be inserted into an input field with the id=g-recaptcha-response. :param api_key: The 2Captcha API key. :param site_key: The site_key extracted from the Captcha iframe url :param url: url of the site you're on :return: The response from captcha validating the test """ print("Solving Captcha...") print("Sending Request...") request_response = requests.get("https://2captcha.com/in.php?", params={ "googlekey": site_key, "method": "userrecaptcha", "pageurl": url, "key": api_key, "json": 1, "invisible": 0, }) request_response.raise_for_status() print("Waiting for Response...") time.sleep(30) answer_response_json = {'status': 0, 'request': 'CAPCHA_NOT_READY'} while answer_response_json['request'] == 'CAPCHA_NOT_READY': answer_response = requests.get("https://2captcha.com/res.php", params={ "key": api_key, "action": "get", "id": request_response.json()['request'], "json": 1 }) answer_response_json = answer_response.json() print(answer_response_json) time.sleep(5) if answer_response_json['status'] == 1: print("Solved!") return answer_response_json['request'] elif answer_response_json['request'] == 'ERROR_CAPTCHA_UNSOLVABLE': raise TimeoutError("ERROR_CAPTCHA_UNSOLVABLE") else: raise Exception(answer_response_json['request'])
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def _cifar_meanstd_normalize(image): """Mean + stddev whitening for CIFAR-10 used in ResNets. Args: image: Numpy array or TF Tensor, with values in [0, 255] Returns: image: Numpy array or TF Tensor, shifted and scaled by mean/stdev on CIFAR-10 dataset. """ # Channel-wise means and std devs calculated from the CIFAR-10 training set cifar_means = [125.3, 123.0, 113.9] cifar_devs = [63.0, 62.1, 66.7] rescaled_means = [x / 255. for x in cifar_means] rescaled_devs = [x / 255. for x in cifar_devs] image = (image - rescaled_means) / rescaled_devs return image
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def boolean(entry, option_key="True/False", **kwargs): """ Simplest check in computer logic, right? This will take user input to flick the switch on or off Args: entry (str): A value such as True, On, Enabled, Disabled, False, 0, or 1. option_key (str): What kind of Boolean we are setting. What Option is this for? Returns: Boolean """ error = f"Must enter 0 (false) or 1 (true) for {option_key}. Also accepts True, False, On, Off, Yes, No, Enabled, and Disabled" if not isinstance(entry, str): raise ValueError(error) entry = entry.upper() if entry in ("1", "TRUE", "ON", "ENABLED", "ENABLE", "YES"): return True if entry in ("0", "FALSE", "OFF", "DISABLED", "DISABLE", "NO"): return False raise ValueError(error)
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def case_insensitive_equals(name1: str, name2: str) -> bool: """ Convenience method to check whether two strings match, irrespective of their case and any surrounding whitespace. """ return name1.strip().lower() == name2.strip().lower()
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def ensure_listable(obj): """Ensures obj is a list-like container type""" return obj if isinstance(obj, (list, tuple, set)) else [obj]
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def merge_dicts(*dicts: dict) -> dict: """Merge dictionaries into first one.""" merged_dict = dicts[0].copy() for dict_to_merge in dicts[1:]: for key, value in dict_to_merge.items(): if key not in merged_dict or value == merged_dict[key]: merged_dict[key] = value else: raise ValueError( f"Test {key} already has a mark we don't want to overwrite: \n" f"- existing: {merged_dict[key]} " f"- new value: {value}" ) merged_dict.update(dict_to_merge) return merged_dict
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import calendar def convert_ts(tt): """ tt: time.struct_time(tm_year=2012, tm_mon=10, tm_mday=23, tm_hour=0, tm_min=0, tm_sec=0, tm_wday=1, tm_yday=297, tm_isdst=-1) >>> tt = time.strptime("23.10.2012", "%d.%m.%Y") >>> convert_ts(tt) 1350950400 tt: time.struct_time(tm_year=1513, tm_mon=1, tm_mday=1, tm_hour=0, tm_min=0, tm_sec=0, tm_wday=2, tm_yday=1, tm_isdst=0) >>> tt = time.strptime("1.1.1513", "%d.%m.%Y") >>> convert_ts(tt) 0 >>> tt = 12 >>> convert_ts(tt) """ try: ts = calendar.timegm(tt) """ As from the github issue https://github.com/prashanthellina/rsslurp/issues/680, there are some cases where we might get timestamp in negative values, so consider 0 if the converted timestamp is negative value. """ if ts < 0: ts = 0 except TypeError: ts = None return ts
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def cmd(f): """Decorator to declare class method as a command""" f.__command__ = True return f
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def small_prior(): """Give string format of small uniform distribution prior""" return "uniform(0, 10)"
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def skip_device(name): """ Decorator to mark a test to only run on certain devices Takes single device name or list of names as argument """ def decorator(function): name_list = name if type(name) == list else [name] function.__dict__['skip_device'] = name_list return function return decorator
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from typing import Iterable from typing import Any from typing import Tuple def tuple_from_iterable(val: Iterable[Any]) -> Tuple[Any, ...]: """Builds a tuple from an iterable. Workaround for https://github.com/python-attrs/attrs/issues/519 """ return tuple(val)
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def sensitivity_metric(event_id_1, event_id_2): """Determine similarity between two epochs, given their event ids.""" if event_id_1 == 1 and event_id_2 == 1: return 0 # Completely similar if event_id_1 == 2 and event_id_2 == 2: return 0.5 # Somewhat similar elif event_id_1 == 1 and event_id_2 == 2: return 0.5 # Somewhat similar elif event_id_1 == 2 and event_id_1 == 1: return 0.5 # Somewhat similar else: return 1
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def duracion_promedio_peliculas(p1: dict, p2: dict, p3: dict, p4: dict, p5: dict) -> str: """Calcula la duracion promedio de las peliculas que entran por parametro. Esto es, la duración total de todas las peliculas dividida sobre el numero de peliculas. Retorna la duracion promedio en una cadena de formato 'HH:MM' ignorando los posibles decimales. Parametros: p1 (dict): Diccionario que contiene la informacion de la pelicula 1. p2 (dict): Diccionario que contiene la informacion de la pelicula 2. p3 (dict): Diccionario que contiene la informacion de la pelicula 3. p4 (dict): Diccionario que contiene la informacion de la pelicula 4. p5 (dict): Diccionario que contiene la informacion de la pelicula 5. Retorna: str: la duracion promedio de las peliculas en formato 'HH:MM'. """ # Se extraen las duraciones de las películas. duracion1 = p1["duracion"] duracion2 = p2["duracion"] duracion3 = p3["duracion"] duracion4 = p4["duracion"] duracion5 = p5["duracion"] # Promedio de duraciones de las películas. promedio = (duracion1 + duracion2 + duracion3 + duracion4 + duracion5) / 5 # Conversión a formato 'HH:MM'. horas = promedio // 60 minutos = promedio % 60 if horas < 10: horas = '0' + str(int(horas)) else: horas = str(int(horas)) if minutos < 10: minutos = '0' + str(int(minutos)) else: minutos = str(int(minutos)) return horas + ":" + minutos
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def _to_test_data(text): """ Lines should be of this format: <word> <normal_form> <tag>. Lines that starts with "#" and blank lines are skipped. """ return [l.split(None, 2) for l in text.splitlines() if l.strip() and not l.startswith("#")]
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def align2local(seq): """ Returns list such that 'ATG---CTG-CG' ==> [0,1,2,2,2,3,4,5,5,6,7] Used to go from align -> local space """ i = -1 lookup = [] for c in seq: if c != "-": i += 1 lookup.append(i) return lookup
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import os def get_system_path(): """ Get the system path as a list of files Returns: List of names in the system path """ path = os.getenv('PATH') if path: return path.split(os.pathsep) return []
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def parsec_params_list_to_dict(var): """ convert parsec parameter array to dictionary :param var: :return: """ parsec_params = dict() parsec_params["rle"] = var[0] parsec_params["x_pre"] = var[1] parsec_params["y_pre"] = var[2] parsec_params["d2ydx2_pre"] = var[3] parsec_params["th_pre"] = var[4] parsec_params["x_suc"] = var[5] parsec_params["y_suc"] = var[6] parsec_params["d2ydx2_suc"] = var[7] parsec_params["th_suc"] = var[8] return parsec_params
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def parse_msiinfo_suminfo_output(output_string): """ Return a dictionary containing information from the output of `msiinfo suminfo` """ # Split lines by newline and place lines into a list output_list = output_string.splitlines() results = {} # Partition lines by the leftmost ":", use the string to the left of ":" as # the key and use the string to the right of ":" as the value for output in output_list: key, _, value = output.partition(':') if key: results[key] = value.strip() return results
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import time import json async def ping(ws): """Send a ping request on an established websocket connection. :param ws: an established websocket connection :return: the ping response """ ping_request = { 'emit': "ping", 'payload': { 'timestamp': int(time.time()) } } await ws.send(json.dumps(ping_request)) return json.loads(await ws.recv())
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def target(x, seed, instance): """A target function for dummy testing of TA perform x^2 for easy result calculations in checks. """ # Return x[i] (with brackets) so we pass the value, not the # np array element return x[0] ** 2, {'key': seed, 'instance': instance}
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def prop_GAC(csp, newVar=None): """ Do GAC propagation. If newVar is None we do initial GAC enforce processing all constraints. Otherwise we do GAC enforce with constraints containing newVar on GAC Queue """ constraints = csp.get_cons_with_var(newVar) if newVar else csp.get_all_cons() pruned = [] # NOTE: although <constraints> is a list, the order is unimportant and acts like a set. # See page 209 of RN textbook while constraints != []: constraint = constraints.pop(0) # grab the first constraint for var in constraint.get_unasgn_vars(): # get_scope()? for val in var.cur_domain(): if not constraint.has_support(var, val): # Check if we have already pruned (var, val) if (var, val) not in pruned: var.prune_value(val) pruned.append((var, val)) # We have modified var's domain, so add back all constraints # that have var in it's scope for c in csp.get_cons_with_var(var): if c not in constraints: constraints.append(c) # Check if var's domain is empty if var.cur_domain_size() == 0: return False, pruned return True, pruned
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def submit_only_kwargs(kwargs): """Strip out kwargs that are not used in submit""" kwargs = kwargs.copy() for key in ['patience', 'min_freq', 'max_freq', 'validation', "max_epochs", "epoch_boost", "train_size", "valid_size"]: _ = kwargs.pop(key, None) return kwargs
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import os def convert_rscape_svg_to_one_line(rscape_svg, destination): """ Convert R-scape SVG into SVG with 1 line per element. """ output = os.path.join(destination, 'rscape-one-line.svg') cmd = (r"perl -0777 -pe 's/\n +fill/ fill/g' {rscape_svg} | " r"perl -0777 -pe 's/\n d=/ d=/g' | " r"perl -0777 -pe 's/\n +<tspan/ <tspan/g' | " r"perl -0777 -pe 's/\n<\/text>/<\/text>/g' " r"> {output}").format(rscape_svg=rscape_svg, output=output) os.system(cmd) return output
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def bags_with_gold( parents_of, _ ): """ Starting from leaf = 'gold', find recursively its parents upto the root and add them to a set Number of bags that could contain gold = length of the set """ contains_gold = set() def find_roots( bag ): for outer_bag in parents_of[ bag ]: contains_gold.add( outer_bag ) find_roots( outer_bag ) find_roots('shiny gold') return len(contains_gold)
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def get_netcdf_filename(batch_idx: int) -> str: """Generate full filename, excluding path.""" assert 0 <= batch_idx < 1e6 return f"{batch_idx:06d}.nc"
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def close(x, y, rtol, atol): """Returns True if x and y are sufficiently close. Parameters ---------- rtol The relative tolerance. atol The absolute tolerance. """ # assumes finite weights return abs(x-y) <= atol + rtol * abs(y)
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def min_spacing(mylist): """ Find the minimum spacing in the list. Args: mylist (list): A list of integer/float. Returns: int/float: Minimum spacing within the list. """ # Set the maximum of the minimum spacing. min_space = max(mylist) - min(mylist) # Iteratively find a smaller spacing. for item in mylist: spaces = [abs(item - item2) for item2 in mylist if item != item2] min_space = min(min_space, min(spaces)) # Return the answer. return min_space
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def has_even_parity(message: int) -> bool: """ Return true if message has even parity.""" parity_is_even: bool = True while message: parity_is_even = not parity_is_even message = message & (message - 1) return parity_is_even
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def mock_mkdir(monkeypatch): """Mock the mkdir function.""" def mocked_mkdir(path, mode=0o755): return True monkeypatch.setattr("charms.layer.git_deploy.os.mkdir", mocked_mkdir)
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import zipfile import os def zip_dir_recursively(base_dir, zip_file): """Zip compresses a base_dir recursively.""" zip_file = zipfile.ZipFile(zip_file, 'w', compression=zipfile.ZIP_DEFLATED) root_len = len(os.path.abspath(base_dir)) for root, _, files in os.walk(base_dir): archive_root = os.path.abspath(root)[root_len:] for f in files: fullpath = os.path.join(root, f) archive_name = os.path.join(archive_root, f) zip_file.write(fullpath, archive_name, zipfile.ZIP_DEFLATED) zip_file.close() return zip_file
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def reautorank(reaumur): """ This function converts Reaumur to rankine, with Reaumur as parameter.""" rankine = (reaumur * 2.25) + 491.67 return rankine
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import re def is_sedol(value): """Checks whether a string is a valid SEDOL identifier. Regex from here: https://en.wikipedia.org/wiki/SEDOL :param value: A string to evaluate. :returns: True if string is in the form of a valid SEDOL identifier.""" return re.match(r'^[0-9BCDFGHJKLMNPQRSTVWXYZ]{6}\d$', value)
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def get_img_size(src_size, dest_size): """ Возвращает размеры изображения в пропорции с оригиналом исходя из того, как направлено изображение (вертикально или горизонтально) :param src_size: размер оригинала :type src_size: list / tuple :param dest_size: конечные размеры :type dest_size: list / tuple :rtype: tuple """ width, height = dest_size src_width, src_height = src_size if height >= width: return (int(float(width) / height * src_height), src_height) return (src_width, int(float(height) / width * src_width))
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def _get_split_idx(N, blocksize, pad=0): """ Returns a list of indexes dividing an array into blocks of size blocksize with optional padding. Padding takes into account that the resultant block must fit within the original array. Parameters ---------- N : Nonnegative integer Total array length blocksize : Nonnegative integer Size of each block pad : Nonnegative integer Pad to add on either side of each index Returns ------- split_idx : List of 2-tuples Indices to create splits pads_used : List of 2-tuples Pads that were actually used on either side Examples -------- >>> split_idx, pads_used = _get_split_idx(5, 2) >>> print split_idx [(0, 2), (2, 4), (4, 5)] >>> print pads_used [(0, 0), (0, 0), (0, 0)] >>> _get_split_idx(5, 2, pad=1) >>> print split_idx [(0, 3), (1, 5), (3, 5)] >>> print pads_used [(0, 1), (1, 1), (1, 0)] """ num_fullsplits = N // blocksize remainder = N % blocksize split_idx = [] pads_used = [] for i in range(num_fullsplits): start = max(0, i * blocksize - pad) end = min(N, (i + 1) * blocksize + pad) split_idx.append((start, end)) leftpad = i * blocksize - start rightpad = end - (i + 1) * blocksize pads_used.append((leftpad, rightpad)) # Append the last split if there is a remainder if remainder: start = max(0, num_fullsplits * blocksize - pad) split_idx.append((start, N)) leftpad = num_fullsplits * blocksize - start pads_used.append((leftpad, 0)) return split_idx, pads_used
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import pkg_resources def _get_highest_tag(tags): """Find the highest tag from a list. Pass in a list of tag strings and this will return the highest (latest) as sorted by the pkg_resources version parser. """ return max(tags, key=pkg_resources.parse_version)
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import warnings def disable_warnings_temporarily(func): """Helper to disable warnings for specific functions (used mainly during testing of old functions).""" def inner(*args, **kwargs): warnings.filterwarnings("ignore") func(*args, **kwargs) warnings.filterwarnings("default") return inner
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def norm(x): """Normalize 1D tensor to unit norm""" mu = x.mean() std = x.std() y = (x - mu)/std return y
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import re def formatKwargsKey(key): """ 'fooBar_baz' -> 'foo-bar-baz' """ key = re.sub(r'_', '-', key) return key
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import re def _remove_invalid_characters(file_name): """Removes invalid characters from the given file name.""" return re.sub(r'[/\x00-\x1f]', '', file_name)
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import os def write_curies(filepaths: dict, ontoid: str, prefix_map: dict, pref_prefix_map: dict) -> bool: """ Update node id field in an edgefile and each corresponding subject/object node in the corresponding edges to have a CURIE, where the prefix is the ontology ID and the class is inferred from the IRI. :param in_path: str, path to directory :param ontoid: the Bioportal ID of the ontology :return: True if complete, False otherwise """ success = False nodepath = filepaths["nodelist"] edgepath = filepaths["edgelist"] outnodepath = nodepath + ".tmp" outedgepath = edgepath + ".tmp" update_these_nodes = {} try: with open(nodepath,'r') as innodefile, \ open(edgepath, 'r') as inedgefile: with open(outnodepath,'w') as outnodefile, \ open(outedgepath, 'w') as outedgefile: for line in innodefile: updated_node = False line_split = (line.rstrip()).split("\t") node_iri = line_split[0] if ontoid in prefix_map: for prefix in prefix_map[ontoid]["prefixes"]: if node_iri.startswith(prefix[0]): split_iri = node_iri.rsplit(prefix[1],1) if ontoid in pref_prefix_map: ontoid = pref_prefix_map[ontoid] if len(split_iri) == 2: new_curie = f"{ontoid}:{split_iri[1]}" else: new_curie = f"{ontoid}:" line_split[0] = new_curie update_these_nodes[node_iri] = new_curie updated_node = True continue # If we don't have a native prefix OR this is a foreign prefix # then look at other ontologies if ontoid not in prefix_map or not updated_node: for prefix_set in prefix_map: for prefix in prefix_map[prefix_set]["prefixes"]: if node_iri.startswith(prefix[0]): split_iri = node_iri.rsplit(prefix[1],1) if prefix_set in pref_prefix_map: prefix_set = pref_prefix_map[prefix_set] if len(split_iri) == 2: new_curie = f"{prefix_set}:{split_iri[1]}" else: new_curie = f"{prefix_set}:" line_split[0] = new_curie update_these_nodes[node_iri] = new_curie continue outnodefile.write("\t".join(line_split) + "\n") for line in inedgefile: line_split = (line.rstrip()).split("\t") # Check for edges containing nodes to be updated if line_split[1] in update_these_nodes: line_split[1] = update_these_nodes[line_split[1]] if line_split[3] in update_these_nodes: line_split[3] = update_these_nodes[line_split[3]] outedgefile.write("\t".join(line_split) + "\n") os.replace(outnodepath,nodepath) os.replace(outedgepath,edgepath) success = True except (IOError, KeyError) as e: print(f"Failed to write CURIES for {nodepath} and/or {edgepath}: {e}") success = False return success
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def items(dic): """Py 2/3 compatible way of getting the items of a dictionary.""" try: return dic.iteritems() except AttributeError: return iter(dic.items())
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import random import logging import time def request_retry_decorator(fn_to_call, exc_handler): """A generic decorator for retrying cloud API operations with consistent repeatable failure patterns. This can be API rate limiting errors, connection timeouts, transient SSL errors, etc. Args: fn_to_call: the function to call and wrap around exc_handler: a bool return function to check if the passed in exception is retriable """ def wrapper(*args, **kwargs): MAX_ATTEMPTS = 10 SLEEP_SEC_MIN = 5 SLEEP_SEC_MAX = 15 for i in range(1, MAX_ATTEMPTS + 1): try: return fn_to_call(*args, **kwargs) except Exception as e: if i < MAX_ATTEMPTS and exc_handler(e): sleep_duration_sec = \ SLEEP_SEC_MIN + random.random() * (SLEEP_SEC_MAX - SLEEP_SEC_MIN) logging.warn( "API call failed, waiting for {} seconds before re-trying (this was attempt" " {} out of {}).".format(sleep_duration_sec, i, MAX_ATTEMPTS)) time.sleep(sleep_duration_sec) continue raise e return wrapper
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def as_string(raw_data): """Converts the given raw bytes to a string (removes NULL)""" return bytearray(raw_data[:-1])
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import math def generate_trapezoid_profile(max_v, time_to_max_v, dt, goal): """Creates a trapezoid profile with the given constraints. Returns: t_rec -- list of timestamps x_rec -- list of positions at each timestep v_rec -- list of velocities at each timestep a_rec -- list of accelerations at each timestep Keyword arguments: max_v -- maximum velocity of profile time_to_max_v -- time from rest to maximum velocity dt -- timestep goal -- final position when the profile is at rest """ t_rec = [0.0] x_rec = [0.0] v_rec = [0.0] a_rec = [0.0] a = max_v / time_to_max_v time_at_max_v = goal / max_v - time_to_max_v # If profile is short if max_v * time_to_max_v > goal: time_to_max_v = math.sqrt(goal / a) time_from_max_v = time_to_max_v time_total = 2.0 * time_to_max_v profile_max_v = a * time_to_max_v else: time_from_max_v = time_to_max_v + time_at_max_v time_total = time_from_max_v + time_to_max_v profile_max_v = max_v while t_rec[-1] < time_total: t = t_rec[-1] + dt t_rec.append(t) if t < time_to_max_v: # Accelerate up a_rec.append(a) v_rec.append(a * t) elif t < time_from_max_v: # Maintain max velocity a_rec.append(0.0) v_rec.append(profile_max_v) elif t < time_total: # Accelerate down decel_time = t - time_from_max_v a_rec.append(-a) v_rec.append(profile_max_v - a * decel_time) else: a_rec.append(0.0) v_rec.append(0.0) x_rec.append(x_rec[-1] + v_rec[-1] * dt) return t_rec, x_rec, v_rec, a_rec
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import six def str_to_bool(s): """Convert a string value to its corresponding boolean value.""" if isinstance(s, bool): return s elif not isinstance(s, six.string_types): raise TypeError('argument must be a string') true_values = ('true', 'on', '1') false_values = ('false', 'off', '0') if s.lower() in true_values: return True elif s.lower() in false_values: return False else: raise ValueError('not a recognized boolean value: %s'.format(s))
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import os import re import sys def help(user_display_name, module_file_fullpath, module_name): """Generate help message for all actions can be used in the job""" my_path = os.path.dirname(module_file_fullpath) my_fname = os.path.basename(module_file_fullpath) my_package = module_name.rsplit(u'.')[-2] # ex: sayhello my_package_path = module_name.rsplit(u'.', 1)[-2] # ex: wechatbot.sayhello help_msg = u'Actions in "%s":\n========\n' % (my_package) for action_py in os.listdir(my_path): action_name = u'' action_desc = u'' # Skip non-file if not os.path.isfile(os.path.join(my_path, action_py)): continue # Skip self if action_py == my_fname: continue # Folders start with "__" if re.findall(u'^__.+', action_py): continue # Folders start with "." if re.findall(u'^\..*', action_py): continue action_name = re.sub(u'\.py$', u'', action_py) # Load action module action_module_path = u'%s.%s' % (my_package_path, action_name) action_from_path = my_package_path # Import the "help" module try: action_module = __import__( action_module_path, fromlist = [action_from_path]) except: print(u"Cannot import %s." % (action_module_path), file = sys.stderr) continue # Get Job description try: action_desc = action_module._help_desc except: action_desc = u'[no description]' print(u"No _help_desc for %s." % (action_module_path), file = sys.stderr) # Arrange action_name and action_desc in help_msg help_msg += u'> %s\n\t%s\n' % (action_name, action_desc) # Tail messages help_msg += u'========\nTo get detailed usage for\neach action, try:\n' if user_display_name: help_msg += u'@%s\u2005%s <action> -h' % (user_display_name, my_package) else: help_msg += u'%s <action> -h' % (my_package) return help_msg
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def winner(board): """ Returns the winner of the game, if there is one. """ #looking horizontal winner i = 0 while i < len(board): j = 1 while j <len(board): if board[i][j-1]==board[i][j] and board[i][j] == board[i][j+1]: return board[i][j] j += 2 i += 1 #looking vertical winner i = 1 while i < len(board): j = 0 while j <len(board): if board[i-1][j]==board[i][j] and board[i][j] == board[i+1][j]: return board[i][j] j += 1 i += 2 #looking diagonal winner if board[1][1] ==board[0][0] and board[1][1] == board[2][2]: return board[1][1] elif board[1][1] ==board[0][2] and board[1][1] == board[2][0]: return board[1][1] else: return None
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import socket def _nslookup(ipv4): """Lookup the hostname of an IPv4 address. Args: ipv4: IPv4 address Returns: hostname: Name of host """ # Initialize key variables hostname = None # Return result try: ip_results = socket.gethostbyaddr(ipv4) if len(ip_results) > 1: hostname = ip_results[0] except: hostname = None return (ipv4, hostname)
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def sessions(request): """ Cookies prepeocessor """ context = {} return context
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import six import base64 def Base64WSEncode(s): """ Return Base64 web safe encoding of s. Suppress padding characters (=). Uses URL-safe alphabet: - replaces +, _ replaces /. Will convert s of type unicode to string type first. @param s: string to encode as Base64 @type s: string @return: Base64 representation of s. @rtype: string NOTE: Taken from keyczar (Apache 2.0 license) """ if isinstance(s, six.text_type): # Make sure input string is always converted to bytes (if not already) s = s.encode("utf-8") return base64.urlsafe_b64encode(s).decode("utf-8").replace("=", "")
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def onlyWikipediaURLS(urls): """Some example HTML page data is from wikipedia. This function converts relative wikipedia links to full wikipedia URLs""" wikiURLs = [url for url in urls if url.startswith('/wiki/')] return ["https://en.wikipedia.org"+url for url in wikiURLs]
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import fcntl import os def SetFdBlocking(fd, is_blocking): """Set a file descriptor blocking or nonblocking. Please note that this may affect more than expected, for example it may affect sys.stderr when called for sys.stdout. Returns: The old blocking value (True or False). """ if hasattr(fd, 'fileno'): fd = fd.fileno() old = fcntl.fcntl(fd, fcntl.F_GETFL) if is_blocking: value = old & ~os.O_NONBLOCK else: value = old | os.O_NONBLOCK if old != value: fcntl.fcntl(fd, fcntl.F_SETFL, value) return bool(old & os.O_NONBLOCK)
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def RetrieveResiduesNumbers(ResiduesInfo): """Retrieve residue numbers.""" # Setup residue IDs sorted by residue numbers... ResNumMap = {} for ResName in ResiduesInfo["ResNames"]: for ResNum in ResiduesInfo["ResNum"][ResName]: ResNumMap[ResNum] = ResName ResNumsList = [] if len(ResNumMap): ResNumsList = sorted(ResNumMap, key = int) return ResNumsList
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import requests import json def search(keyword, limit=20): """ Search is the iTunes podcast directory for the given keywords. Parameter: keyword = A string containing the keyword to search. limit: the maximum results to return, The default is 20 results. returns: A JSON object. """ keyword = keyword.replace(' ', '+') # Replace white space with +. # Set user agent. user_agent = 'Mozilla/5.0 (Macintosh; Intel Mac OS X 10_9_3) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/35.0.1916.47 Safari/537.36' headers = {'User-Agent': user_agent} # ITunes podcast search URL. itunesurl = 'https://itunes.apple.com/search?term=%s&country=us&limit=%d&entity=podcast' % (keyword, limit) req = requests.get(itunesurl, headers=headers) return json.loads(req.text)
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import torch def permute(x, in_shape='BCD', out_shape='BCD', **kw): """ Permute the dimensions of a tensor.\n - `x: Tensor`; The nd-tensor to be permuted. - `in_shape: str`; The dimension shape of `x`. Can only have characters `'B'` or `'C'` or `'D'`, which stand for Batch, Channel, or extra Dimensions. The default value `'BCD'` means the input tensor `x` should be at lest 2-d with shape `(Batch, Channel, Dim0, Dim1, Dim2, ...)`, where `Dim0, Dim1, Dim2 ...` stand for any number of extra dimensions. - `out_shape: str or tuple or None`; The dimension shape of returned tensor. Default: `'BCD'`. If a `str`, it is restricted to the same three characters `'B'`, `'C'` or `'D'` as the `in_shape`. If a `tuple`, `in_shape` is ignored, and simply `x.permute(out_shape)` is returned. If `None`, no permution will be performed. - `return: Tensor`; Permuted nd-tensor. """ if (in_shape == out_shape) or (out_shape is None): return x if isinstance(out_shape, (list, tuple, torch.Size)): return x.permute(*out_shape) if isinstance(in_shape, str) and isinstance(out_shape, str) : assert set(in_shape) == set(out_shape) <= {'B', 'C', 'D'}, 'In and out shapes must have save set of chars among B, C, and D.' in_shape = in_shape.lower().replace('d', '...') out_shape = out_shape.lower().replace('d', '...') return torch.einsum(f'{in_shape}->{out_shape}', x) return x
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import re def fullmatch(regex, string, flags=0): """Emulate python-3.4 re.fullmatch().""" matched = re.match(regex, string, flags=flags) if matched and matched.span()[1] == len(string): return matched return None
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def myFunction(objectIn): """What you are supposed to test.""" return objectIn.aMethodToMock() + 2
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def get_training_set_count(disc): """Returns the total number of training sets of a discipline and all its child elements. :param disc: Discipline instance :type disc: models.Discipline :return: sum of training sets :rtype: int """ training_set_counter = 0 for child in disc.get_descendants(include_self=True): training_set_counter += child.training_sets.count() return training_set_counter
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def _async_attr_mapper(attr_name, val): """The `async` attribute works slightly different than the other bool attributes. It can be set explicitly to `false` with no surrounding quotes according to the spec.""" if val in [False, 'False']: return ' {}=false'.format(attr_name) elif val: return ' {}'.format(attr_name) else: return ''
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def print_pos_neg(num): """Print if positive or negative in polarity level >>> print_pos_neg(0.8) 'positive' >>> print_pos_neg(-0.5) 'negative' """ if num > 0: return "positive" elif num == 0: return "neutral" else: return "negative"
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