Search is not available for this dataset
name
stringlengths 18
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| reactivity
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values | dataset
stringclasses 23
values |
|---|---|---|---|---|---|
Huber (2019), ZSIN | CGTGGTTCTTTGACGAGAACCACCCATATAGGACATGGGCTTACCATGGAAGCTATGAGGCCCCCACACAAGGGTCAGCGTCCTCTCTAATAAACGGGGTTGTCAGGCTCCTGTCAAAACCCTGGGATGTGGTGACTGGAGTCACAGGAATAGCCATGACCGACACCACACCGTATGGTCAGCAAAGAGTTTTCAAGGAAAAAGTGGACACTAGGGTGCCAGACCCCCAAGAAGGCACTCGTCAGGTTATGAGCATGGTCTCTTCCTGGTTGTGGAAAGAGCTAGGCAAACACAAACGGC | [
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Huber (2019), ZSIN | ACCACGCTGGCCGCCAGGCACAGATCGCCGAATAGCGGCGGCCGG | [
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Huber (2019), ZSIN | ACTGTGAGAGGTGCCAAGAGAATGGCAGTCTTGGGAGACACAGCCTGGGACTTTGGATCAGTTGGAGGCGCTCTCAACTCATTGGGCAAGGGCATCCATCAAATTTTTGGAGCAGCTTTCAAATCATTGTTTGGAGGAATGTCCTGGTTCTCACAAATTCTCATTGGAACGTTGCTGATGTGGTTGGGCCTGAACACAAAGAATGGATCTATTTCCCTTATGTGCTTGGCCTTAGGGGGAGTGTTGATCTTCTTATCCACAGCCGTCTCTGCTGATGTGGGGTGCTCGGTGGACTTCTCA | [
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2499
] | viral_gRNA | Huber, 2019 in virion |
Huber (2019), ZSIN | GGAACAGCTGTTAAGGGAAAGGAGGCTGCACACAGTGATCTAGGCTACTGGATTGAGAGTGAGAAGAATGACACATGGAGGCTGAAGAGGGCCCACCTGATCGAGATGAAAACATGTGAATGGCCAAAGTCCCACACATTGTGGACAGATGGAATAGAAGAGAGTGATCTGATCATACCCAAGTCTTTAGCTGGGCCACTCAGCCATCACAACACCAGAGAGGGCTACAGGACCCAAATGAAAGGGCCATGGCACAGTGAAGAGCTTGAAATTCGGTTTGAGGAATGCCCAGGCACTAAG | [
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3320,
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3324
] | viral_gRNA | Huber, 2019 in virion |
Huber (2019), ZSIN | AGCAGTAGCCGTCTCCAGCGCCATACTGTCGCGGACCGCCTGGGGGTGGGGGGAGGCTGGGGCCCTGATCACAGCTGCAACTTCCACTTTGTGGGAAGGCTCTCCGAACAAGTACTGGAACTCCTCTACAGCCACTTCACTGTGTAACATTTTTAGGGGAAGTTACTTGGCTGGAGCTTCTCTAATCTACACAGTAACAAGAAACGCTGGTTTGGTCAAGAGACGTGGGGGTGGAACAGGAGAGACCCTGGGAGAGAAATGGAAGGCCCGCTTGAACCAGATGTCGGCCCTGGAGTTCTA | [
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7724
] | viral_gRNA | Huber, 2019 in virion |
Huber (2019), ZSIN | CCATTCTACGCATGGGACTTTGGAGTCCCGCTGCTAATGATAGGTTGCTACTCACAATTAACACCCCTGACCCTAATAGTGGCCATCATTTTGCTCGTGGCGCACTACATGTACTTGATCCCAGGGCTGCAGGCAGCAGCTGCGCGTGCTGCCCAGAAGAGAACGGCAGCTGGCATCATGAAGAACCCTGTTGTGGATGGAATAGTGGTGACTGACATTGACACAATGACAATTGACCCCCAAGTGGAGAAAAAGATGGGACAGGTGCTACTCATAGCAGTAGCCGTCTCCAGCGCCATA | [
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] | viral_gRNA | Huber, 2019 in virion |
Huber (2019), ZSIN | GTCTTCTGGGCTTGATTACCGCCAATGAACTCGGATGGTTGGAGAGAACAAAGAGTGACCTAAGCCATCTAATGGGAAGGAGAGAGGAGGGGGCAACCATAGGATTCTCAATGGACATTGACCTGCGGCCAGCCTCAGCTTGGGCCATCTATGCTGCCCTGACAACTTTCATTACCCCAGCCGTCCAACATGCAGTGACCACTTCATACAACAACTACTCCTTAATGGCGATGGCCACGCAAGCTGGAGTGTTGTTTGGTATGGGCAAAGGGATGCCATTCTACGCATGGGACTTTGGAG | [
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] | viral_gRNA | Huber, 2019 in virion |
Huber (2019), ZSIN | CCTAGAGACCATTATGCTTTTGGGGTTGCTGGGAACAGTCTCGCTGGGAATCTTTTTCGTCTTGATGCGGAACAAGGGCATAGGGAAGATGGGCTTTGGAATGGTGACTCTTGGGGCCAGCGCATGGCTCATGTGGCTCTCGGAAATTGAGCCAGCCAGAATTGCATGTGTCCTCATTGTTGTGTTCCTATTGCTGGTGGTGCTCATACCTGAGCCAGAAAAGCAAAGATCTCCCCAGGACAACCAAATGGCAATCATCATCATGGTAGCAGTAGGTCTTCTGGGCTTGATTACCGCCAA | [
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Huber (2019), ZSIN | CCGGCAGAGGTGTGGACCAGATACGGAGAGAAAAGAGTGCTCAAACCGAGGTGGATGGACGCCAGAGTCTGTTCAGATCATGCGGCCCTGAAGTCATTCAAGGAGTTTGCCGCTGGGAAAAGAGGAGCGGCTTTTGGAGTGATGGAAGCCCTGGGAACACTGCCGGGACACATGACAGAGAGATTCCAGGAAGCCATTGACAACCTCGCTGTGCTCATGCGGGCAGAGACTGGAAGCAGACCTTACAAAGCCGCGGCGGCCCAATTGCCGGAGACCCTAGAGACCATTATGCTTTTGGGG | [
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] | viral_gRNA | Huber, 2019 in virion |
Huber (2019), ZSIN | CACACTGGCTTGAAGCAAGAATGCTCCTTGACAATATCTACCTCCAAGATGGCCTCATAGCCTCGCTCTATCGACCTGAGGCCGACAAAGTAGCAGCCATTGAGGGAGAGTTCAAGCTTAGGACGGAGCAAAGGAAGACCTTTGTGGAACTCATGAAAAGAGGAGATCTTCCTGTTTGGCTGGCCTATCAGGTTGCATCTGCCGGAATAACCTACACAGATAGAAGATGGTGCTTTGATGGCACGACCAACAACACCATAATGGAAGACAGTGTGCCGGCAGAGGTGTGGACCAGATACG | [
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] | viral_gRNA | Huber, 2019 in virion |
Huber (2019), ZSIN | AGAGTTCCAGAAAACAAAACATCAAGAGTGGGACTTTGTCGTGACAACTGACATTTCAGAGATGGGCGCCAACTTTAAAGCTGACCGTGTCATAGATTCCAGGAGATGCCTAAAGCCGGTCATACTTGATGGCGAGAGAGTCATTCTGGCTGGACCCATGCCTGTCACACATGCCAGCGCTGCCCAGAGGAGGGGGCGCATAGGCAGGAATCCCAACAAACCTGGAGATGAGTATCTGTATGGAGGTGGGTGCGCAGAGACTGATGAAGACCATGCACACTGGCTTGAAGCAAGAATGCT | [
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] | viral_gRNA | Huber, 2019 in virion |
Huber (2019), ZSIN | TGTGGGGTGCTCGGTGGACTTCTCAAAGAAGGAAACGAGATGCGGTACAGGGGTGTTCGTCTATAACGACGTTGAAGCCTGGAGGGACAGGTACAAGTACCATCCTGACTCCCCCCGTAGATTGGCAGCAGCAGTCAAGCAAGCCTGGGAAGATGGTATCTGTGGGATCTCCTCTGTTTCAAGAATGGAAAACATCATGTGGAGATCAGTAGAAGGGGAGCTCAACGCAATCCTGGAAGAAAATGGAGTTCAACTGACGGTCGTTGTGGGATCTGTAAAAAACCCCATGTGGAGAGGTCC | [
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] | viral_gRNA | Huber, 2019 in virion |
Huber (2019), ZSIN | TCAACAAGGGTTGAGATGGGCGAGGCGGCTGCCATCTTCATGACCGCCACGCCACCAGGAACCCGTGACGCATTTCCGGACTCCAACTCACCAATTATGGACACCGAAGTGGAAGTCCCGGAGAGAGCCTGGAGCTCAGGCTTTGATTGGGTGACGGACCATTCTGGAAAAACAGTTTGGTTTGTTCCAAGCGTGAGGAACGGCAATGAGATCGCAGCTTGTCTGACGAAGGCTGGAAAACGGGTCATACAGCTCAGCAGAAAGACTTTTGAGACAGAGTTCCAGAAAACAAAACATCAA | [
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] | viral_gRNA | Huber, 2019 in virion |
Huber (2019), ZSIN | AAAGGATGGGGACATTGGAGCGGTTGCGCTGGACTACCCAGCAGGAACTTCAGGATCTCCAATCCTAGACAAGTGTGGGAGAGTGATAGGACTCTATGGCAATGGGGTCGTGATCAAAAATGGGAGTTATGTTAGTGCCATCACCCAAGGGAGGAGGGAGGAAGAGACTCCTGTTGAGTGCTTCGAGCCTTCGATGCTGAAGAAGAAGCAGCTAACTGTCTTAGACTTGCATCCTGGAGCTGGGAAAACCAGGAGAGTTCTTCCTGAAATAGTCCGTGAAGCCATAAAAACAAGACTCCG | [
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] | viral_gRNA | Huber, 2019 in virion |
Huber (2019), ZSIN | CGGAAGTCACTGGAAACAGTCCCCGGCTCGATGTGGCACTAGATGAGAGTGGTGATTTCTCCCTGGTGGAGGATGACGGTCCCCCCATGAGAGAGATCATACTTAAAGTGGTCCTGATGACCATCTGTGGCATGAACCCAATAGCCATACCCTTTGCAGCTGGAGCGTGGTACGTATACGTGAAGACTGGAAAAAGGAGTGGTGCTCTATGGGATGTGCCTGCTCCCAAGGAAGTAAAAAAGGGGGAGACCACAGATGGAGTGTACAGAGTAATGACTCGTAGACTGCTAGGTTCAACAC | [
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] | viral_gRNA | Huber, 2019 in virion |
Huber (2019), ZSIN | GGCCCTGGGACTAACCGCTGTGAGGCTAGTCGACCCCATCAACGTGGTGGGACTGCTGTTGCTCACAAGGAGTGGGAAGCGGAGCTGGCCCCCTAGCGAAGTACTCACAGCTGTTGGCCTGATATGCGCATTGGCTGGAGGGTTCGCCAAGGCAGATATAGAGATGGCTGGGCCCATGGCCGCGGTTGGTCTGCTAATTGTCAGTTACGTGGTCTCAGGAAAGAGTGTGGACATGTACATTGAAAGAGCAGGTGACATCACATGGGAAAAAGATGCGGAAGTCACTGGAAACAGTCCCCG | [
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] | viral_gRNA | Huber, 2019 in virion |
Huber (2019), ZSIN | GCCTTGGCCTCGTGTCTTTTGCAAACTGCGATTTCCGCCTTGGAAGGCGACCTGATGGTTCTCATCAATGGTTTTGCTCTGGCCTGGTTGGCAATACGAGCGATGGTTGTTCCACGCACTGACAACATCACCTTGGCAATCCTGGCTGCTCTGACACCACTGGCCCGGGGCACACTGCTTGTGGCGTGGAGAGCAGGCCTTGCTACTTGCGGGGGGTTCATGCTCCTCTCTCTGAAGGGAAAAGGCAGTGTGAAGAAGAACTTACCATTTGTCATGGCCCTGGGACTAACCGCTGTGAGG | [
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] | viral_gRNA | Huber, 2019 in virion |
Huber (2019), ZSIN | TTCTGCTCATGGTGCAGGAAGGGCTGAAGAAGAGAATGACCACAAAGATCATCATAAGCACATCAATGGCAGTGCTGGTAGCTATGATCCTGGGAGGATTTTCAATGAGTGACCTGGCTAAGCTTGCAATTTTGATGGGTGCCACCTTCGCGGAAATGAACACTGGAGGAGATGTAGCTCATCTGGCGCTGATAGCGGCATTCAAAGTCAGACCAGCGTTGCTGGTATCTTTCATCTTCAGAGCTAATTGGACACCCCGTGAAAGCATGCTGCTGGCCTTGGCCTCGTGTCTTTTGCAAA | [
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] | viral_gRNA | Huber, 2019 in virion |
Huber (2019), ZSIN | GTTTGAGGAATGCCCAGGCACTAAGGTCCACGTGGAGGAAACATGTGGAACAAGAGGACCGTCTCTGAGATCAACCACTGCAAGCGGAAGGGTGATCGAGGAATGGTGCTGCAGGGAGTGCACAATGCCCCCACTGTCGTTCCGGGCTAAAGATGGCTGTTGGTATGGAATGGAGATAAGGCCCAGGAAAGAACCAGAAAGTAACTTAGTAAGGTCAATGGTGACTGCAGGATCAACTGATCACATGGATCACTTCTCCCTTGGAGTGCTTGTGATTCTGCTCATGGTGCAGGAAGGGCT | [
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] | viral_gRNA | Huber, 2019 in virion |
Huber (2019), ZSIN | GTGAAGCCATAAAAACAAGACTCCGTACTGTGATCTTAGCTCCAACTAGGGTTGTCGCTGCTGAAATGGAGGAAGCCCTTAGAGGGCTTCCAGTGCGTTATATGACAACAGCAGTCAATGTCACCCACTCTGGGACAGAAATCGTTGACTTAATGTGCCATGCCACCTTCACTTCACGTCTACTACAGCCAATCAGAGTCCCCAACTATAATCTGTATATTATGGATGAGGCCCACTTCACAGATCCCTCAAGTATAGCAGCAAGAGGATACATTTCAACAAGGGTTGAGATGGGCGAGG | [
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] | viral_gRNA | Huber, 2019 in virion |
Huber (2019), ZSIN | TAAAAAACCCCATGTGGAGAGGTCCACAGAGACTGCCCGTGCCTGTGAACGAGCTGCCCCACGGCTGGAAGGCTTGGGGGAAATCGTACTTCGTCAGAGCAGCAAAGACAAATAACAGCTTTGTCGTGGATGGTGACACACTGAAGGAATGCCCACTCAAACATAGAGCATGGAACAGCTTTCTTGTGGAGGATCATGGGTTCGGGGTATTTCACACTAGTGTCTGGCTCAAGGTTAGAGAAGATTATTCATTAGAGTGTGATCCTGCCGTTATTGGAACAGCTGTTAAGGGAAAGGAGG | [
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] | viral_gRNA | Huber, 2019 in virion |
Huber (2019), ZSIN | ACCAGATGTCGGCCCTGGAGTTCTACTCCTACAAAAAGTCAGGCATCACCGAGGTGTGCAGAGAAGAGGCCCGCCGCGCCCTCAAGGACGGTGTGGCAACGGGAGGCCATGCTGTGTCCCGAGGAAGTGCAAAGCTGAGATGGTTGGTGGAGCGGGGATACCTGCAGCCCTATGGAAAGGTCATTGATCTTGGATGTGGCAGAGGGGGCTGGAGTTACTACGCCGCCACCATCCGCAAAGTTCAAGAAGTGAAAGGATACACAAAAGGAGGCCCTGGTCATGAAGAACCCATGTTGGTGC | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GCACAGACATTAGACTACTCAAGCCTTCCGCCAAGAACGTGCATGTCCCGTACACGCAGGCCGCATCTGGATTCGAGATGTGGAAAAACAACTCAGGCCGCCCACTGCAGGAAACCGCCCCTTTCGGGTGCAAGATTGCAGTCAATCCGCTTCGAGCGGTGGACTGCTCATACGGGAACATTCCCATCTCTATCGACATCCCGAACGCTGCCTTTATCAGGACATCAGATGCACCACTGGTCTCAACAGTCAAATGTGATGTCAGTGAGTGCACTTACTCAGCGGACTTCGGCGGGATGG | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | TACTCAGCGGACTTCGGCGGGATGGCTACCCTGCAGTATGTATCCGACCGCGAAGGACAATGCCCTGTACATTCGCATTCGAGCACAGCAACCCTCCAAGAGTCGACAGTTCATGTCCTGGAGAAAGGAGCGGTGACAGTACACTTCAGCACCGCGAGCCCACAGGCGAACTTTATTGTATCGCTGTGTGGTAAGAAGACAACATGCAATGCAGAATGCAAACCACCAGCTGACCATATCGTGAGCACCCCGCACAAAAATGACCAAGAATTCCAAGCCGCCATCTCAAAAACTTCATGG | [
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11299
] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | AGCCGCCATCTCAAAAACTTCATGGAGTTGGCTGTTTGCCCTTTTCGGCGGCGCCTCGTCGCTATTAATTATAGGACTTATGATTTTTGCTTGCAGCATGATGCTGACTAGCACACGAAGATGACCGCTACGCCCCAATGACCCGACCAGCAAAACTCGATGTACTTCCGAGGAACTGATGTGCATAATGCATCAGGCTGGTATATTAGATCCCCGCTTACCGCGGGCAATATAGCAACACCAAAACTCGACGTATTTCCGAGGAAGCGCAGTGCATAATGCTGCGCAGTGTTGCCAAAT | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ATAATGCTGCGCAGTGTTGCCAAATAATCACTATATTAACCATTTATTCAGCGGACGCCAAAACTCAATGTATTTCTGAGGAAGCATGGTGCATAATGCCATGCAGCGTCTGCATAACTTTTTATTATTTCTTTTATTAATCAACAAAATTTTGTTTTTAACATTTC | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | TGGAGGGGCTCCAGGCGGACATCGGAGCAGCACTCGTCGAAACCCCGCGCGGTCATGTAAGGATAATACCTCAAGCAAATGACCGTATGATCGGACAGTACATCGTTGTCTCGCCAACCTCTGTGCTGAAGAACGCTAAACTCGCACCAGCACACCCGCTAGCAGACCAGGTTAAGATCATAACGCACTCCGGAAGATCAGGAAGGTATGCAGTCGAACCATACGACGCTAAAGTACTGATGCCAGCAGGAAGTGCCGTACCATGGCCAGAATTCTTAGCACTGAGTGAGAGCGCCACGC | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ATTGGCGGCGTAGTACACACTATTGAATCAAACAGCCGACCAATTGCACTACCATCACAATGGAGAAGCCAGTAGTTAACGTAGACGTAGACCCGCAGAGTCCGTTTGTCGTGCAACTGCAAAAGAGCTTCCCGCAATTTGAGGTAGTAGCACAGCAGGTCACTCCAAATGACCATGCTAATGCCAGAGCATTTTCGCATCTGGCCAGTAAACTAATCGAGCTGGAGGTTCCTACCACAGCGACGATTTTGGACATAGGCAGCGCACCGGCTCGTAGAATGTTTTCCGAGCACCAGTACC | [
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200,
201,
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203,
204,
205,
206,
207,
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210,
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213,
214,
215,
216,
217,
218,
219,
220,
221,
222,
223,
224,
225,
226,
227,
228,
229,
230,
231,
232,
233,
234,
235,
236,
237,
238,
239,
240,
241,
242,
243,
244,
245,
246,
247,
248,
249,
250,
251,
252,
253,
254,
255,
256,
257,
258,
259,
260,
261,
262,
263,
264,
265,
266,
267,
268,
269,
270,
271,
272,
273,
274,
275,
276,
277,
278,
279,
280,
281,
282,
283,
284,
285,
286,
287,
288,
289,
290,
291,
292,
293,
294,
295,
296,
297,
298,
299
] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | AGAATGTTTTCCGAGCACCAGTACCATTGCGTTTGCCCCATGCGTAGTCCAGAAGACCCGGACCGCATGATGAAATATGCCAGCAAACTGGCGGAAAAAGCATGCAAGATTACGAATAAGAACTTGCATGAGAAGATCAAGGACCTCCGGACCGTACTTGATACACCGGATGCTGAAACGCCATCACTCTGCTTCCACAACGATGTTACCTGCAACACGCGTGCCGAGTACTCCGTCATGCAGGACGTGTACATCAACGCACCCGGAACTATTTACCATCAGGCTATGAAAGGCGTGCGG | [
1.700612,
1.089516,
1.041955,
1.205959,
2.478851,
1.919149,
0.128059,
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497,
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501,
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510,
511,
512,
513,
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515,
516,
517,
518,
519,
520,
521,
522,
523,
524,
525,
526,
527,
528,
529,
530,
531,
532,
533,
534,
535,
536,
537,
538,
539,
540,
541,
542,
543,
544,
545,
546,
547,
548,
549,
550,
551,
552,
553,
554,
555,
556,
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560,
561,
562,
563,
564,
565,
566,
567,
568,
569,
570,
571,
572,
573,
574
] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CCATCAGGCTATGAAAGGCGTGCGGACCCTGTACTGGATTGGCTTCGATACCACCCAGTTCATGTTCTCGGCTATGGCAGGTTCGTACCCTGCGTACAACACCAACTGGGCCGACGAAAAAGTCCTCGAAGCGCGTAACATCGGACTCTGCAGCACAAAGCTGAGTGAAGGCAGGACAGGAAAGTTGTCGATAATGAGGAAGAAGGAGTTGAAGCCCGGGTCACGGGTTTATTTCTCCGTTGGATCGACACTTTACCCAGAACACAGAGCCAGCTTGCAGAGCTGGCATCTTCCATCGGT | [
0.653764,
1.270963,
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790,
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793,
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797,
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804,
805,
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840,
841,
842,
843,
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846,
847,
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849
] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | TGCAGAGCTGGCATCTTCCATCGGTGTTCCACCTGAAAGGAAAGCAGTCGTACACTTGCCGCTGTGATACAGTGGTGAGCTGCGAAGGCTACGTAGTGAAGAAAATCACCATCAGTCCCGGGATCACGGGAGAAACCGTGGGATACGCGGTTACAAACAATAGCGAGGGCTTCTTGCTATGCAAAGTTACCGATACAGTAAAAGGAGAACGGGTATCGTTCCCCGTGTGCACGTATATCCCGGCCACCATATGCGATCAGATGACCGGCATAATGGCCACGGATATCTCACCTGACGATG | [
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1124
] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GCCACGGATATCTCACCTGACGATGCACAAAAACTTCTGGTTGGGCTCAACCAGCGAATCGTCATTAACGGTAAGACTAACAGGAACACCAATACCATGCAAAATTACCTTCTGCCAATCATTGCACAAGGGTTCAGCAAATGGGCCAAGGAGCGCAAAGAAGACCTTGACAATGAAAAAATGCTGGGTACCAGAGAGCGCAAGCTTACATATGGCTGCTTGTGGGCGTTTCGCACTAAGAAAGTGCACTCGTTCTATCGCCCACCTGGAACGCAGACCATCGTAAAAGTCCCAGCCTCT | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GACCATCGTAAAAGTCCCAGCCTCTTTTAGCGCTTTCCCCATGTCATCCGTATGGACTACCTCTTTGCCCATGTCGCTGAGGCAGAAGATAAAATTGGCATTACAACCAAAGAAGGAGGAAAAACTGCTGCAAGTCCCGGAGGAATTAGTCATGGAGGCCAAGGCTGCTTTCGAGGATGCTCAGGAGGAATCCAGAGCGGAGAAGCTCCGAGAAGCACTCCCACCATTAGTGGCAGACAAAGGTATCGAGGCAGCCGCGGAAGTTGTCTGCGAAGTGGAGGGGCTCCAGGCGGACATCGG | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | TAACCCCGGAGGCACCCTCGTGGTGAAGTCCTACGGTTACGCCGACCGCAATAGTGAGGACGTAGTCACCGCTCTTGCCAGAAAATTTGTCAGAGTGTCTGCAGCGAGGCCAGAGTGCGTCTCAAGCAATACAGAAATGTACCTGATCTTCCGACAACTAGACAACAGCCGCACACGACAATTCACCCCGCATCATCTGAATTGTGTGATTTCGTCCGTGTACGAGGGTACAAGAGACGGAGTTGGAGCCGCACCGTCATACCGCACTAAAAGGGAGAACATTGCTGATTGTCAAGAGGA | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GTCAAAAAATTCTTGAGCCAGTTCAAACACCACTCCGTACTTGTGGTCTCAGAGGAAAAAATTGAAGCTCCCCACAAGAGAATCGAATGGATCGCCCCGATTGGCATAGCCGGCGCTGATAAGAACTACAACCTGGCTTTCGGGTTTCCGCCGCAGGCACGGTACGACCTGGTGTTTATCAATATTGGAACTAAATACAGAAACCATCACTTTCAGCAGTGCGAAGACCATGCGGCGACCTTGAAAACCCTCTCGCGTTCGGCCCTGAACTGCCTTAACCCCGGAGGCACCCTCGTGGTG | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | AGAGCATCCCGTTAACGTACCATCCTGCCGATTCAGCGAGGCCAGTAGCTCATTGGGACAACAGCCCAGGAACCCGCAAGTATGGGTACGATCACGCCGTTGCCGCCGAACTCTCCCGTAGATTTCCGGTGTTCCAGCTAGCTGGGAAAGGCACACAGCTTGATTTGCAGACGGGCAGAACTAGAGTTATCTCCGCACAGCATAACTTGGTCCCAGTGAACCGCAATCTCCCGCACGCCTTAGTCCCCGAGCACAAGGAGAAACAACCCGGCCCGGTCAAAAAATTCTTGAGCCAGTTCA | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ATCCCTTTTCGACGGAGAGATGGCCCGCTTGGCAGCGGCACAACCCCCGGCAAGTACATGCCCTACGGATGTGCCTATGTCTTTCGGATCGTTTTCCGACGGAGAGATTGAGGAGCTGAGCCGCAGAGTAACCGAGTCTGAGCCCGTCCTGTTTGGGTCATTTGAACCGGGCGAAGTGAACTCAATTATATCGTCCCGATCAGCCGTATCTTTTCCACCACGCAAGCAGAGACGTAGACGCAGGAGCAGGAGGACCGAATACTGACTAACCGGGGTAGGTGGGTACATATTTTCGACGGA | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ATCATCCTGACATGCTTCCGCGGGTGGGTTAAGCAACTGCAAATCGACTATCCCGGACATGAGGTAATGACAGCCGCGGCCTCACAAGGGCTAACCAGAAAAGGAGTATATGCCGTCCGGCAAAAAGTCAATGAAAACCCGCTGTACGCGATCACATCAGAGCATGTGAACGTGCTGCTCACCCGCACTGAGGACAGGCTAGTATGGAAAACTTTACAGGGCGACCCATGGATTAAGCAGCTCACTAACGTACCAAAAGGAAATTTTCAAGCCACCATCGAGGACTGGGAAGCTGAACAC | [
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3049
] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GCATACTGCCGCGATGAAAGTAGGACTACGTATAGTGTACGGGAACACTACCAGTTTCCTAGATGTGTACGTGAACGGAGTCACACCAGGAACGTCTAAAGACCTGAAAGTCATAGCTGGACCAATTTCAGCATCGTTTACACCATTCGATCACAAGGTCGTTATCCATCGCGGCCTGGTGTACAACTATGACTTCCCGGAATACGGAGCGATGAAACCAGGAGCGTTTGGAGACATTCAAGCTACCTCCTTGACTAGCAAAGATCTCATCGCCAGCACAGACATTAGACTACTCAAGCC | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GTCATGTCCTCGGAGGTTTTGCCTTCCACCAACCAAGAGTACATCACCTGCAAATTCACCACTGTGGTCCCCTCCCCTAAAGTCAAATGCTGCGGCTCCTTGGAATGTCAGCCCGCCGCTCACGCAGACTATACCTGCAAGGTCTTTGGAGGGGTGTACCCCTTCATGTGGGGAGGAGCACAATGTTTTTGCGACAGTGAGAACAGCCAGATGAGTGAGGCGTACGTCGAATTGTCAGCAGATTGCGCGACTGACCACGCGCAGGCGATTAAGGTGCATACTGCCGCGATGAAAGTAGGA | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GGTCGGCTAATGCTGAAACATTCACCGAGACCATGAGTTACCTATGGTCGAACAGCCAGCCATTCTTCTGGGTCCAGCTGTGTATACCCCTGGCCGCTGTCATCGTTCTAATGCGCTGTTGCTCATGCTGCCTGCCTTTTTTAGTGGTTGCCGGCGCCTACCTGGCGAAGGTAGACGCCTACGAACATGCGACCACTGTTCCAAATGTGCCACAGATACCGTATAAGGCACTTGTTGAAAGGGCAGGGTACGCCCCGCTCAATTTGGAGATTACTGTCATGTCCTCGGAGGTTTTGCCTT | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ATACATATGGGGCAATCACGAACCGGTAAGGGTCTATGCCCAAGAGTCTGCACCAGGAGACCCTCACGGATGGCCACACGAAATAGTACAGCATTACTACCATCGCCATCCTGTGTACACCATCTTAGCCGTCGCATCAGCTGCTGTGGCGATGATGATTGGCGTAACTGTTGCAGCATTATGTGCCTGTAAAGCGCGCCGTGAGTGCCTGACGCCATATGCCCTGGCCCCAAATGCCGTGATTCCAACTTCGCTGGCACTTTTGTGCTGTGTTAGGTCGGCTAATGCTGAAACATTCAC | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | TAGGTGGGTACATATTTTCGACGGACACAGGCCCTGGGCACTTGCAAAAGAAGTCCGTTCTGCAGAACCAGCTTACAGAACCGACCTTGGAGCGCAATGTTCTGGAAAGAATCTACGCCCCGGTGCTCGACACGTCGAAAGAGGAACAGCTCAAACTCAGGTACCAGATGATGCCCACCGAAGCCAACAAAAGCAGGTACCAGTCTAGAAAAGTAGAAAATCAGAAAGCCATAACCACTGAGCGACTGCTTTCAGGGCTACGACTGTATAACTCTGCCACAGATCAGCCAGAATGCTATA | [
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6309,
6310,
6311,
6312,
6313,
6314,
6315,
6316,
6317,
6318,
6319,
6320,
6321,
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6325,
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6340,
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6347,
6348,
6349
] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CATCCGCAGTGCGGTTCCATCAGCGATGCAGAACACGTTGCAAAACGTGCTCATTGCCGCGACTAAAAGAAACTGCAACGTCACACAAATGCGTGAATTGCCAACACTGGACTCAGCGACATTCAACGTTGAATGCTTTCGAAAATATGCATGTAATGACGAGTATTGGGAGGAGTTTGCCCGAAAGCCAATTAGGATCACTACTGAGTTCGTTACCGCATACGTGGCCAGACTGAAAGGCCCTAAGGCCGCCGCACTGTTCGCAAAGACGCATAATTTGGTCCCATTGCAAGAAGTGCC | [
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6623,
6624
] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ATTTGGTCCCATTGCAAGAAGTGCCTATGGATAGGTTCGTCATGGACATGAAAAGAGACGTGAAAGTTACACCTGGCACGAAACACACAGAAGAAAGACCGAAAGTACAAGTGATACAAGCCGCAGAACCCCTGGCGACCGCTTACCTGTGCGGGATCCACCGGGAGTTAGTGCGCAGGCTTACAGCCGTCTTGCTACCCAACATTCACACGCTTTTTGACATGTCGGCGGAGGACTTTGATGCAATCATAGCAGAACACTTCAAGCAAGGTGACCCGGTACTGGAGACGGATATCGCCT | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CCGGTACTGGAGACGGATATCGCCTCGTTCGACAAAAGCCAAGACGACGCTATGGCGTTAACTGGCCTGATGATCTTGGAAGACCTGGGTGTGGACCAACCACTACTCGACTTGATCGAGTGCGCCTTTGGAGAAATATCATCCACCCATCTGCCCACGGGTACCCGTTTCAAATTCGGGGCGATGATGAAATCCGGAATGTTCCTCACGCTCTTTGTCAACACAGTTCTGAATGTCGTTATCGCCAGCAGAGTATTGGAGGAGCGGCTTAAAACGTCCAAATGTGCAGCATTTATCGGC | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GTCCAAATGTGCAGCATTTATCGGCGACGACAACATCATACACGGAGTAGTATCTGACAAAGAAATGGCTGAGAGGTGTGCCACCTGGCTCAACATGGAGGTTAAGATCATTGACGCAGTCATCGGCGAGAGACCGCCTTACTTCTGCGGTGGATTCATCTTGCAAGATTCGGTTACCTCCACAGCGTGTCGCGTGGCGGACCCCTTGAAAAGGCTGTTTAAGTTGGGTAAACCGCTCCCAGCCGACGACGAGCAAGACGAAGACAGAAGACGCGCTCTGCTAGATGAAACAAAGGCGTG | [
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7449
] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CTCTGCTAGATGAAACAAAGGCGTGGTTTAGAGTAGGTATAACAGACACCTTAGCAGTGGCCGTGGCAACTCGGTATGAGGTAGACAACATCACACCTGTCCTGCTGGCATTGAGAACTTTTGCCCAGAGCAAAAGAGCATTTCAAGCCATCAGAGGGGAAATAAAGCATCTCTACGGTGGTCCTAAATAGTCAGCATAGCACATTTCATCTGACTAATACCACAACACCACCACCATGAATAGAGGATTCTTTAACATGCTCGGCCGCCGCCCCTTCCCGGCCCCCACTGCCATGTGGA | [
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7723,
7724
] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | TTCCCGGCCCCCACTGCCATGTGGAGGCCGCGGAGAAGGAGGCAGGCGGCCCCGATGCCTGCCCGCAATGGGCTGGCTTCCCAAATCCAGCAACTGACCACAGCCGTCAGTGCCCTAGTCATTGGACAGGCAACTAGACCTCAAACCCCACGCCCACGCCCGCCGCCGCGCCAGAAGAAGCAGGCGCCAAAGCAACCACCGAAGCCGAAGAAACCAAAAACACAGGAGAAGAAGAAGAAGCAACCTGCAAAACCCAAACCCGGAAAGAGACAACGTATGGCACTCAAGTTGGAGGCCGAC | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | TTGCAATCGTCAGACCCCGTAAGAAGGTAGTGCTATGCGGAGACCCTAAGCAATGCGGATTCTTCAACATGATGCAACTAAAGGTATATTTCAACCACCCGGAAAAAGACATATGTACCAAGACATTCTACAAGTTTATCTCCCGACGTTGCACACAGCCAGTCACGGCTATTGTATCGACACTGCATTACGATGGAAAAATGAAAACCACAAACCCGTGCAAGAAGAACATCGAAATCGACATTACAGGGGCCACGAAGCCGAAGCCAGGGGACATCATCCTGACATGCTTCCGCGGGT | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ATCAAGTCTGTCGCCATCCCACTGCTATCTACAGGCATTTACGCAGCCGGAAAAGACCGCCTTGAAGTATCACTTAACTGCTTGACAACCGCGCTAGATAGAACTGATGCGGACGTAACCATCTACTGCCTGGATAAGAAGTGGAAGGAAAGAATCGACGCGGTGCTCCAACTTAAGGAGTCTGTAACAGAGCTGAAGGATGAGGATATGGAGATCGACGACGAGTTAGTATGGATCCATCCGGACAGTTGCCTGAAGGGAAGAAAGGGATTCAGTACTACAAAAGGAAAGTTGTATTCG | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | AGAACATTGCTGATTGTCAAGAGGAAGCAGTTGTCAATGCAGCCAATCCGCTGGGCAGACCAGGCGAAGGAGTCTGCCGTGCCATCTATAAACGTTGGCCGAACAGTTTCACCGATTCAGCCACAGAGACCGGCACCGCAAAACTGACTGTGTGCCAAGGAAAGAAAGTGATCCACGCGGTTGGCCCTGATTTCCGGAAACACCCAGAGGCAGAAGCCCTGAAATTGCTGCAAAACGCCTACCATGCAGTGGCAGACTTAGTAAATGAACATAATATCAAGTCTGTCGCCATCCCACTGC | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | TATGGCACTCAAGTTGGAGGCCGACAGACTGTTCGACGTCAAAAATGAGGACGGAGATGTCATCGGGCACGCACTGGCCATGGAAGGAAAGGTAATGAAACCACTCCACGTGAAAGGAACTATTGACCACCCTGTGCTATCAAAGCTCAAATTCACCAAGTCGTCAGCATACGACATGGAGTTCGCACAGTTGCCGGTCAACATGAGAAGTGAGGCGTTCACCTACACCAGCGAACACCCTGAAGGGTTTTACAACTGGCACCACGGAGCGGTGCAGTATAGTGGAGGTAGATTTACCAT | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | AGTATAGTGGAGGTAGATTTACCATCCCCCGCGGAGTAGGAGGCAGAGGAGACAGTGGTCGTCCGATTATGGATAACTCAGGCCGGGTTGTCGCGATAGTCCTCGGAGGGGCTGATGAGGGAACAAGAACTGCCCTTTCGGTCGTCACCTGGAATAGCAAAGGGAAGACAATCAAGACAACCCCGGAAGGGACAGAAGAGTGGTCTGCAGCACCACTGGTCACGGCCATGTGCTTGCTTGGAAACGTGAGCTTCCCATGCAATCGCCCGCCCACATGCTACACCCGCGAACCATCCAGAG | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | TGCTACACCCGCGAACCATCCAGAGCTCTTGACATCCTTGAAGAGAACGTGAACCACGAGGCCTACGACACCCTGCTCAACGCCATATTGCGGTGCGGATCGTCCGGCAGAAGTAAAAGAAGCGTCACTGACGACTTTACCTTGACCAGCCCGTACTTGGGCACATGCTCGTACTGTCACCATACTGAACCGTGCTTTAGCCCGATTAAGATCGAGCAGGTCTGGGATGAAGCGGACGACAACACCATACGCATACAGACTTCCGCCCAGTTTGGATACGACCAAAGCGGAGCAGCAAGC | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ATACGACCAAAGCGGAGCAGCAAGCTCAAATAAGTACCGCTACATGTCGCTCGAGCAGGATCATACTGTCAAAGAAGGCACCATGGATGACATCAAGATCAGCACCTCAGGACCGTGTAGAAGGCTTAGCTACAAAGGATACTTTCTCCTCGCGAAGTGTCCTCCAGGGGACAGCGTAACGGTTAGTATAGCGAGTAGCAACTCAGCGACGTCATGCACAATGGCCCGCAAGATAAAACCAAAATTCGTGGGACGGGAAAAATATGACCTACCTCCCGTTCACGGTAAGAAGATTCCTTG | [
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9099
] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CCGTTCACGGTAAGAAGATTCCTTGCACAGTGTACGACCGTCTGAAAGAAACAACCGCCGGCTACATCACTATGCACAGGCCGGGACCGCACGCCTATACGTCCTATCTGGAGGAATCATCAGGGAAAGTCTACGCGAAGCCACCATCCGGAAAGAACATTACGTACGAGTGCAAGTGCGGCGATTACAAGACCGGTACCGTTACGACCCGTACCGAAATCACGGGCTGCACCGCCATCAAGCAGTGCGTCGCCTATAAGAGCGACCAAACGAAGTGGGTCTTCAATTCGCCGGACTTGA | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | TGGGTCTTCAATTCGCCGGACTTGATCAGACATGCCGACCACACGGCCCAAGGGAAATTGCATTTACCTTTCAAGCTGATCCCGAGTACCTGCATGGTCCCTGTTGCCCACGCGCCGAACGTAGTACACGGCTTTAAACACATCAGCCTCCAATTAGACACAGACCACCTGACATTGCTCACCACCAGGAGACTAGGGGCAAATCCGGAACCAACTACTGAATGGATCATCGGAAAGACGGTTAGAAACTTCACCGTCGACCGAGATGGCCTGGAATACATATGGGGCAATCACGAACCG | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | TACTACAAAAGGAAAGTTGTATTCGTACTTTGAAGGCACCAAATTCCATCAAGCAGCAAAAGATATGGCGGAGATAAAGGTCCTGTTCCCAAATGACCAGGAAAGCAACGAGCAACTGTGTGCCTACATATTGGGGGAGACCATGGAAGCAATCCGCGAAAAATGCCCGGTCGACCACAACCCGTCGTCTAGCCCGCCAAAAACGCTGCCGTGCCTCTGCATGTATGCCATGACGCCAGAAAGGGTCCACAGACTCAGAAGCAACAACGTCAAAGAAGTTACAGTATGCTCCTCCACCCC | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GGTCCCGTACAAGGTTGAAACAATAGGAGTGATAGGCACACCAGGATCGGGCAAGTCGGCTATCATCAAGTCAACTGTCACGGCACGTGATCTTGTTACCAGCGGAAAGAAAGAAAACTGCCGCGAAATTGAGGCCGATGTGCTACGGCTGAGGGGCATGCAGATCACGTCGAAGACAGTGGATTCGGTTATGCTCAACGGATGCCACAAAGCCGTAGAAGTGCTGTATGTTGACGAAGCGTTCGCGTGCCACGCAGGAGCACTACTTGCCTTGATTGCAATCGTCAGACCCCGTAAGAA | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CATCGAGGACTGGGAAGCTGAACACAAGGGAATAATTGCTGCGATAAACAGTCCCGCTCCCCGTACCAATCCGTTCAGCTGCAAGACTAACGTTTGCTGGGCGAAAGCACTGGAACCGATACTGGCCACGGCCGGTATCGTACTTACCGGTTGCCAGTGGAGCGAGCTGTTCCCACAGTTTGCAGATGACAAACCACACTCGGCCATCTACGCCCTGGACGTAATCTGCATTAAGTTTTTCGGCATGGACTTGACAAGCGGACTGTTTTCCAAACAGAGCATCCCGTTAACGTACCATCC | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GTATCATTGCATCTGTCCGATGAGATGTGCGGAAGATCCGGACAGATTGTACAAGTATGCAACTAAGCTGAAGAAAAATTGCAAGGGAATAACTGACAAGGAATTGGACAAGAAAATGAAGGAGCTTGCCGCCGTCATGAGCGACCCTGACCTGGAAACTGAGACTATGTGCCTCCACGACGACGAGTCGTGTCGCTACGAAGGGCAAGTCGCTGTTTACCAGGATGTATACGCAGTTGACGGACCGACAAGTCTCTATCACCAAGCCAACAAGGGAGTTAGAGTCGCCTACTGGATAGG | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CAATGCTATGCTGAAAGAAAACTTTCCGACTGTAGCTTCTTACTGTATTATTCCAGAGTACGATGCCTATCTGGACATGGTTGACGGCGCTTCTTGTTGCTTAGACACTGCCAGTTTTTGCCCTGCGAAGCTGCGCAGCTTTCCAAAGAAACACGCTTATTTGGAACCCACAATACGGTCGGCAGTGCCATCAGCGATTCAGAACACGCTCCAGAACGTCCTGGCAGCTGCCACAAAAAGAAATTGCAACGTCACGCAAATGAGAGAATTGCCCGTATTGGATTCGGCTGCCTTTAATGT | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | TATTGGATTCGGCTGCCTTTAATGTGGAATGCTTCAAGAAATATGCGTGCAACAATGAATATTGGGAAACGTTCAAAGAAAACCCCATCAGGCTTACTGAAGAAAATGTGATAAATTACATTACTAAATTAAAAGGACCAAAAGCTGCTGCTCTTTTTGCGAAGACACATAATTTGAATATGTTACAGGACATACCAATGGACAGGTTTGTAATGGACTTAAAGAGGGACGTGAAAGTGACTCCAGGAACAAAACATACTGAAGAACGGCCAAAGGTACAGGTGATACAGGCTGCCGATC | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GTACAGGTGATACAGGCTGCCGATCCGCTAGCGACAGCGTACTTGTGCGGAATCCACCGGGAGCTGGTTAGGAGATTGAATGCTGTCCTGCTTCCGAACATCCACACACTGTTTGACATGTCGGCTGAAGACTTTGACGCTATTATTGCCGAGCATTTCCAGCCTGGGGACTGTGTTCTGGAAACTGACATTGCGTCGTTTGATAAAAGTGAGGACGACGCCATGGCTCTGACCGCGCTAATGATTCTGGAAGATCTAGGAGTGGACGCAGAGCTGTTGACGCTGATTGAGGCGGCTTTC | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GTTGACGCTGATTGAGGCGGCTTTCGGCGAAATATCATCAATACATTTGCCCACCAAAACTAAATTTAAATTCGGAGCCATGATGAAATCCGGAATGTTCCTCACACTGTTTGTGAACACAGTCATCAACATTGTAATCGCAAGCAGAGTGTTAAGAGAGCGGCTAACCGGATCACCATGTGCAGCATTCATTGGAGATGACAACATCGTGAAAGGAGTCAAATCTGACAAATTAATGGCCGACAGGTGCGCCACTTGGTTGAACATGGAGGTCAAGATCATAGACGCCGTGGTGGGCGA | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | AGATCATAGACGCCGTGGTGGGCGAGAAAGCGCCCTATTTCTGTGGAGGGTTTATTTTGTGTGACACCGTGACCGGCACAGCGTGCCGTGTGGCCGACCCCTTAAAAAGGCTGTTTAAGCTTGGCAAACCTTTGGCAGCAGATGATGAACATGACGATGACAGGAGAAGGGCACTACACGAAGAGTCAACACGCTGGAATCGAGTGGGAATTCTTCCAGAGCTGTGTAAGGCAGTAGAATCAAGGTATGAAACCGTAGGAACTTCCATCATAGTTATGGCCATGACTACTCTAGCTAGCA | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ATGGCCATGACTACTCTAGCTAGCAGTGTCAAATCATTCAGCTACCTGAGAGGGGCCCCTATAACTCTCTACGGCTAACCTGAATGGACTACGACATAGTCTAGTCCGCCAAGATGTTCCCGTTCCAACCAATGTATCCGATGCAGCCAATGCCCTATCGCAATCCATTCGCGGCCCCGCGCAGGCCCTGGTTCCCCAGAACTGACCCTTTTCTGGCGATGCAGGTGCAGGAATTAACCCGCTCGATGGCTAACCTGACGTTCAAGCAACGCCGGGACGCGCCACCTGAGGGGCCACCCG | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GTTATTCAGGCCGATGCACGTGGAAGGCAAGATCGACAATGACGTTTTGGCCGCACTTAAGACGAAGAAAGCATCCAAATATGATCTTGAGTATGCAGATGTGCCACAGAACATGCGGGCCGATACATTCAAGTACACCCATGAGAAGCCCCAAGGCTATTACAGCTGGCATCATGGAGCAGTCCAATATGAAAATGGGCGTTTCACGGTGCCAAAAGGAGTTGGGGCCAAGGGAGACAGCGGACGACCCATTCTGGATAATCAGGGACGGGTGGTCGCTATTGTGCTGGGAGGTGTGAA | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | TCGCTATTGTGCTGGGAGGTGTGAATGAAGGATCTAGGACAGCCCTTTCAGTCGTCATGTGGAACGAGAAGGGAGTAACTGTGAAGTATACTCCGGAGAACTGCGAGCAATGGTCACTAGTGACCACCATGTGCCTGCTCGCCAATGTGACGTTCCCATGTGCCCAACCACCAATTTGCTACGACAGAAAACCAGCAGAGACCTTGGCCATGCTCAGCGTTAACGTTGACAACCCGGGCTACGATGAGCTGCTGGAAGCAGCTGTTAAGTGCCCCGGAAGGAAAAGGAGATCTACCGAGG | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ATGGGCGGCGCATGAGAGAAGCCCACACCAATTACCTACCCAAAAATGGAGAAAGTTCACGTTGACATCGAGGAAGACAGCCCATTCCTCAGAGCTTTGCAACGGAGCTTCCCGCAGTTTGAGGTAGAAGCCAAGCAGGTCACTGATAATGACCATGCTAATGCCAGAGCGTTTTCGCATCTGGCTTCAAAACTGATCGAAACGGAGGTGGACCCATCCGACACGATCCTTGACATTGGAAGTGCGCCCGCCCGCAGAATGTATTCTAAGCATAAGTATCATTGCATCTGTCCGATGAGA | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GGAAGGAAAAGGAGATCTACCGAGGAGCTGTTTAAGGAGTACAAGCTAACGCGCCCTTACATGGCCAGATGTATCAGATGTGCCGTTGGGAGCTGCCATAGTCCAATAGCAATCGAGGCAGTGAAGAGTGACGGGCACGACGGCTATGTTAGACTTCAGACTTCCTCGCAGTACGGCCTGGACTCCTCTGGCAACTTAAAAGGAAGGACCATGCGGTATGACATGCACGGGACCATTGAAGAGATACCGCTACATCAAGTGTCACTCCACACATCTCGCCCGTGTCACATTGTGGATGGG | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | TTTCCTTGAGCGGCAGTTCAGTCACTGTGACACCTCCTGCTGGGACTAGCGCCCTGGTGGAATGCGAGTGCGGCGGCACAAAGATCTCCGAGACCATCAACACGGCAAAACAGTTCAGCCAGTGCACAAAGAAGGAGCAGTGCAGAGCATATCGATTGCAGAACGACAAATGGGTGTATAATTCTGACAAACTGCCCAAAGCTGCGGGAGCCACCCTAAAAGGAAAATTACACGTCCCATTCTTGCTGGCAGACGGCAAATGTACTGTGCCTCTGGCACCAGAACCTATGATAACCTTCG | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GCACCAGAACCTATGATAACCTTCGGTTTCCGATCAGTGTCACTGAAACTGCACCCTAAGAATCCCACATATTTGACCACTCGCCAACTTGCTGATGAGCCTCATTACACGCACGAGCTCATATCTGAACCAGCTGTTAGGAATTTTACCGTCACTGAAAAGGGGTGGGAGTTTGTATGGGGAAACCACCCGCCGAAAAGGTTTTGGGCACAGGAAACAGCGCCCGGAAATCCACATGGGCTGCCACACGAGGTGATAACTCATTATTACCACAGATACCCTATGTCCACCATCTTGGGT | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ATACCCTATGTCCACCATCTTGGGTTTGTCAATTTGCGCCGCCATCGTAACCGTTTCTGTTGCAGCGTCCACTTGGCTGTTTTGCAAATCCAGAGTTTCGTGCCTAACTCCTTACCGGCTAACACCCAACGCCAGGATGCCGCTTTGCCTGGCTGTGCTTTGCTGCGCCCGTACTGCCCGGGCCGAGACCACCTGGGAGTCCTTGGATCACCTATGGAACAATAACCAACAGATGTTCTGGATCCAATTGCTGATCCCTCTGGCCGCCTTGATTGTAGTGACTCGCCTGCTCAAGTGCGT | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | TAGTGACTCGCCTGCTCAAGTGCGTGTGCTGTGTAGTGCCTTTTTTAGTCGTGGCCGGCGCCGCAGGCGCCGGCGCCTACGAGCACGCGACCACGATGCCGAGCCAAGCGGGAATCTCGTATAACACCATAGTCAACAGAGCAGGCTACGCGCCACTCCCTATCAGCATAACACCGACAAAGATCAAGCTGATACCCACAGTGAACTTGGAGTACGTCACCTGCCACTACAAAACAGGAATGGATTCACCAGCCATCAAATGCTGCGGATCTCAGGAATGTACTCCAACTTACAGGCCTG | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GAATGTACTCCAACTTACAGGCCTGATGAACAGTGCAAAGTCTTCACAGGGGTTTACCCGTTCATGTGGGGAGGCGCATATTGCTTTTGCGACACTGAGAACACCCAAGTCAGCAAGGCCTACGTAATGAAATCTGACGACTGCCTTGCTGATCACGCTGAAGCATACAAAGCGCACACAGCCTCAGTGCAGGCGTTCCTCAACATCACCGTGGGAGAACACTCCATTGTGACCACTGTGTATGTGAATGGAGAAACTCCTGTGAACTTCAATGGGGTCAAATTAACTGCAGGTCCACTT | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GGTCAAATTAACTGCAGGTCCACTTTCCACAGCTTGGACACCTTTTGACCGCAAAATCGTGCAGTATGCCGGGGAGATCTATAATTACGACTTTCCTGAGTATGGGGCAGGACAACCAGGAGCATTTGGAGACATACAATCCAGAACAGTCTCAAGCTCAGATCTGTACGCCAATACCAATCTAGTGCTGCAGAGACCCAAAGCAGGAGCGATCCATGTGCCATACACTCAGGCGCCATCGGGTTTTGAGCAATGGAAGAAAGATAAAGCTCCGTCATTGAAATTCACCGCCCCTTTCGG | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GCAGCAGTCGAGCTAACCGAGCAAGGGTCGGTGACCATTCATTTCTCGACCGCAAATATCCACCCGGAGTTCAGGCTCCAAATATGCACATCATATGTCACGTGCAAAGGTGATTGTCACCCCCCGAAAGACCACATTGTGACACACCCCCAGTATCACGCCCAAACATTTACAGCCGCGGTGTCAAAAACCGCGTGGACGTGGTTAACATCCCTGCTGGGAGGATCGGCCGTAATTATTATAATTGGCTTAGTGCTGGCTACTATTGTGGCCATGTACGTGCTGACCAACCAGAAACAT | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GTACGTGCTGACCAACCAGAAACATAATTGAACATAGCAGCAATTGGCAAGCTGCCTATATTGAACTCGCGGCGATTGGCATGCCGCTTTAAAATTTTATTTTATTTTCTTTTCTTTTCCGAATCGGATTTTGTTTTTAATATTT | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | TCGCCCGTGTCACATTGTGGATGGGCATGGTTATTTTCTACTTGCTAGGTGCCCGGCAGGGGACTCCATCACCATGGAATTTAAGAAAAATTCAGTCACACACTCCTGCTCAGTGCCGTATGAAGTGAAATTTAATCCTGTAGGCAGAGAACTCTACACTCATCCCCCAGAACACGGAGCAGAGCAAGCGTGCCAAGTCTACGCGCATGATGCACAGAACAGAGGAGCTTATGTCGAGATGCACCTCCCGGGCTCAGAAGTGGATAGCAGTTTGGTTTCCTTGAGCGGCAGTTCAGTCAC | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GAGATTTCGTATGCCCCGCGCCTCGACCAAGAAAAAGAAGAACTACTACGCAAGAAATTACAGCTGAATCCCACACCTGCTAACAGAAGCAGATACCAGTCCAGGAGGGTGGAGAACATGAAAGCCATAACAGCTAGACGTATTCTGCAAGGCCTAGGGCACTATTTGAAGGCAGAAGGAAAAGTGGAGTGCTATCGAACCCTGCATCCTGTTCCTTTGTATTCATCTAGTGTGAATCGTGCTTTTTCAAGCCCCAAGGTCGCAGTGGAAGCCTGCAATGCTATGCTGAAAGAAAACTTT | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | AAGATCCAGTGCTCCCAGCCTATACTGTTCTCACCTAAGGTGCCTGCGTACATTCATCCACGGAAGTACCTCGTGGAAACACCACCGGTGGAAGAGAACCAATCCACAGAGGGGACACCTGAACCAGCACCCGTAAACGTGGATGCAACCAGGACTAGAACGCCTGAACCGATCATCATTGAAGAGGAAGAAGAGGATAGTATAAGTTTGCTGTCAGACGGCCCGACCCACCAGGTGCTGCAAGTCGAGGCAGACATTCACGGGCCGCCTTCTGTATCCAGCTCATCCTGGTCCATTCCT | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GAGTTAGAGTCGCCTACTGGATAGGCTTTGACACCACCCCTTTTATGTTTAAGAACTTGGCTGGAGCATATCCATCATACTCTACCAACTGGGCCGACGAAACCGTGTTAACGGCTCGTAACATAGGCCTGTGCAGCTCCGACGTCATGGAGCGGTCACGTAGAGGGATGTCCATTCTTAGGAAGAAGTATTTGAAACCATCCAATAATGTCCTATTCTCTGTTGGCTCGACCATCTACCACGAGAAGAGGGACTTACTGAGGAGCTGGCACCTGCCGTCTGTATTTCACTTACGTGGCA | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CCGTCTGTATTTCACTTACGTGGCAAGCAAAATTACACATGTCGGTGTGAGACTATAGTTAGTTGCGACGGGTACGTCGTTAAAAGAATAGCTATCAGTCCAGGCCTGTATGGGAAGCCTTCAGGCTATGCTGCCACGATGCACCGCGAGGGATTCTTGTGCTGCAAAGTGACAGACACATTGAACGGGGAGAGGGTCTCTTTTCCCGTGTGCACGTATGTGCCAGCTACATTGTGTGACCAAATGACTGGCATACTGGCAACAGATGTCAGTGCGGACGACGCGCAAAAACTGCTGGTT | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GGACGACGCGCAAAAACTGCTGGTTGGGCTCAACCAGCGCATAGTCGTCAACGGTCGCACCCAAAGAAACACCAATACCATGAAGAATTATCTTTTGCCCGTAGTGGCCCAGGCATTTGCTAGGTGGGCAAAAGAATATAAGGAAGATCAAGAAGATGAGAGGCCACTAGGACTACGAGATAGACAATTAGTTATGGGGTGCTGCTGGGCTTTTAGAAGGCACAAGATAACATCTATTTATAAGCGCCCAGATACCCAAACCATCATCAAAGTGAACAGCGATTTCCACTCATTTGTGCT | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ACAGCGATTTCCACTCATTTGTGCTGCCCAGGATAGGCAGTAACACATTGGAGATCGGGCTGAGAACAAGAATCAGGAAAATGCTAGAAGAGCGCAAGGAGCCGTCACCTCTCATTACTGCCGAGGACGTACAAGAAGCTAAGTGCGCAGCCGATGAGGCTAAGGAGGTGCGTGAAGCCGAGGAGTTGCGCGCTGCACTACCACCTTTGGCAGCAGATGTTGAGGAGCCCACTCTGGAAGCCGATGTTGACTTGATGCTACAAGAGGCTGGGGCCGGCTCAGTGGAGACACCTCGTGGCT | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GTACAACGAACGAGAGTTCGTAAACAGGTATTTGCACCATATTGCCACACATGGAGGAGCGCTGAACACAGATGAAGAATATTACAAAATTGTCAAGCCCAGCGAGCACGACGGCGAATACCTGTATGATATCGACAGGAAACAGTGCGTCAAGAAAGAACTAGTCACTGGGCTAGGGCTTACAGGCGAGCTGGTGGATCCTCCCTTCCATGAATTCGCCTACGAGAGCCTGAGAACACGACCGGCCGCTCCTTACCAAGTACCAACCATAGGGGTGTATGGCGTGCCGGGTTCAGGCAA | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | TGTATGGCGTGCCGGGTTCAGGCAAGTCTGGCATCATTAAAAGCGCAGTCACCAAAAAAGATCTGGTGGTGAGCGCCAAGAAAGAGAACTGCGCAGAAATAATAAGGGACGTCAAGAAAATGAAAGGGCTGGACGTCAATGCCAGAACTGTGGACTCAGTGCTCTTGAATGGATGCAAACACCCCGTAGAGACCCTGTATATTGACGAAGCTTTTGCTTGTCATGCAGGCACTCTCAGAGCGCTCATAGCCATCATAAGACCTAAAAAGGCAGTGCTCTGCGGGGATCCAAAACAGTGCG | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CTCTGCGGGGATCCAAAACAGTGCGGCTTTTTTAACATGATGTGCCTGAAAGTGCATTTTAACCACGAGATTTGCACGCAGGTCTTCCACAAAAGCATCTCTCGTCGTTGCACTAAATCTGTGACTTCGGTCGTCTCAACCTTGTTTTACGACAAAAGAATGAGAACGACGAACCCGAAAGAGACTAAGATTGAGATTGACACTACTGGCAGTACTAAACCAAAGCAGGACGATCTCATTCTCACTTGTTTCAGAGGGTGGGTAAAGCAGTTGCAAATAGATTACAAAGGCAACGAAATA | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | AATAGATTACAAAGGCAACGAAATAATGACGGCAGCCGCCTCTCAAGGGCTGACCCGTAAAGGCGTGTATGCCGTTCGGTACAAGGTGAATGAAAATCCCCTGTACGCACCCACCTCAGAACATGTGAACGTCCTACTGACCCGTACGGAGGACCGTATCGTGTGGAAAACACTAGCCGGCGATCCATGGATAAAAACACTGACGGCCAAGTATCCTGGGAATTTCACTGCCACGATAGAGGAATGGCAAGCAGAGCATGAGGCCATCATGAGGCACATCTTGGAGAGACCGGACCCTAC | [
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3040,
3041,
3042,
3043,
3044,
3045,
3046,
3047,
3048,
3049
] | viral_gRNA | Kutchko,2018 |