Species
stringclasses 2
values | eccDNA type
stringclasses 4
values | eccDNA ID
stringlengths 9
14
| Genome version
stringclasses 2
values | Location
stringlengths 13
25
| Chr
stringclasses 25
values | Start
float64 1
249M
⌀ | End
float64 1.47k
249M
⌀ | Health/Disease
stringclasses 2
values | Tissue/Cell line
stringlengths 3
56
| Disease Name
stringlengths 7
51
| Experiment/Prediction
stringclasses 2
values | Validation Strategies
stringlengths 3
141
| Treatment
stringclasses 11
values | Oncogene
stringlengths 2
237
| Source
stringlengths 13
295
| Library type
stringclasses 9
values | Pubmed ID
stringlengths 7
13
| Public Date
stringclasses 25
values | Function/Characteristic of ecDNA
stringlengths 13
494
| Remarks
stringlengths 2
2.89k
|
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Homo sapiens | ecDNA | ec_hsa_01 | hg19 | chr1:148175322-148195932 | chr1 | 148,175,322 | 148,195,932 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr7:33019431-33040041,chr7:54365673-56353955,chr7:75217045-75699936. |
Homo sapiens | ecDNA | ec_hsa_02 | hg19 | chr1:148175386-148295895 | chr1 | 148,175,386 | 148,295,895 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr7:54175400-55741898. |
Homo sapiens | ecDNA | ec_hsa_03 | hg19 | chr1:153280226-185860842 | chr1 | 153,280,226 | 185,860,842 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | ABL2,ARHGEF2,CKS1B,DUSP12,ETV3,FAM189B,FDPS,HAX1,INTS3,MUC1,NTRK1,PBX1,RIT1,S100A4,S100A7,S100A8,XCL1,YY1AP1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_04 | hg19 | chr1:154210485-154211045 | chr1 | 154,210,485 | 154,211,045 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:98554714-98555274,chr7:53437686-57065330,chr7:57477300-57497860,chr7:65160992-65361551,chrX:107240015-107240575. |
Homo sapiens | ecDNA | ec_hsa_05 | hg19 | chr1:203177968-204957662 | chr1 | 203,177,968 | 204,957,662 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | MDM4 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.This ecDNA is also found in another study(PMID:32807987;eccDNA ID:ec_hsa_6382);2.Pathology:GBM;3.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:54345291-55107618,chr4:55629356-55629856,chr6:100688972-100689472,chrX:11692808-11693308,chrX:30639531-30640031. |
Homo sapiens | ecDNA | ec_hsa_06 | hg19 | chr1:203360625-204898652 | chr1 | 203,360,625 | 204,898,652 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | MDM4 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chrX:11692735-11693266 |
Homo sapiens | ecDNA | ec_hsa_07 | hg19 | chr1:209751070-222324873 | chr1 | 209,751,070 | 222,324,873 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | ATF3,INTS7 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_08 | hg19 | chr1:224238062-224822794 | chr1 | 224,238,062 | 224,822,794 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957. |
Homo sapiens | ecDNA | ec_hsa_09 | hg19 | chr1:238182639-238183163 | chr1 | 238,182,639 | 238,183,163 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748090-78748614,chr3:111174081-111384604,chr7:40425979-55700004,chr7:63668115-65540917,chr8:127493240-131484371,chr11:93361763-93362287,chr20:54188564-54189088,chrX:7505820-7506344,chrX:17239607-17240131,chrX:23578849-23579373,chrX:72338778-72339302,chrX:73257213-73257737,chrX:131541642-131542166,chrY:2844748-2845272,chrY:15291171-15291695,chrY:16497866-16498390. |
Homo sapiens | ecDNA | ec_hsa_10 | hg19 | chr1:78748084-78748614 | chr1 | 78,748,084 | 78,748,614 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:111174084-111384613,chr8:127137778-131068628,chr11:93361756-93362286,chrX:116866132-116866662. |
Homo sapiens | ecDNA | ec_hsa_11 | hg19 | chr1:78748090-78748614 | chr1 | 78,748,090 | 78,748,614 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:238182639-238183163,chr3:111174081-111384604,chr7:40425979-55700004,chr7:63668115-65540917,chr8:127493240-131484371,chr11:93361763-93362287,chr20:54188564-54189088,chrX:7505820-7506344,chrX:17239607-17240131,chrX:23578849-23579373,chrX:72338778-72339302,chrX:73257213-73257737,chrX:131541642-131542166,chrY:2844748-2845272,chrY:15291171-15291695,chrY:16497866-16498390. |
Homo sapiens | ecDNA | ec_hsa_12 | hg19 | chr1:78748126-78748609 | chr1 | 78,748,126 | 78,748,609 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:111174081-111384563,chr8:127493240-131068628,chr11:93361795-93362278,chr20:54188605-54189088,chrX:23578881-23579364. |
Homo sapiens | ecDNA | ec_hsa_13 | hg19 | chr10:22460044-29188375 | chr10 | 22,460,044 | 29,188,375 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | BMI1,RAB18 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:Astrocytoma |
Homo sapiens | ecDNA | ec_hsa_14 | hg19 | chr10:484053-31076181 | chr10 | 484,053 | 31,076,181 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | BMI1,CAMK1D,KLF6,MAP3K8,NET1,RAB18,VIM | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:Oligodendroglioma |
Homo sapiens | ecDNA | ec_hsa_15 | hg19 | chr11:25517143-121336618 | chr11 | 25,517,143 | 121,336,618 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | BCL9L,BIRC2,BIRC3,CBL,CCND1,CRYAB,CTTN,DDB2,DDX6,FGF3,FGF4,FOSL1,GAB2,INPPL1,INTS4,INTS5,KDM2A,KMT2A,LMO2,MACROD1,MALAT1,MAML2,MMP12,NEAT1,PAK1,RBM14,RSF1,SLC3A2,SPI1,TRAF6,TREH,WT1,YAP1,ZBTB16 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_16 | hg19 | chr11:26795187-43284531 | chr11 | 26,795,187 | 43,284,531 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | LMO2,TRAF6,WT1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:Oligoastrocytoma |
Homo sapiens | ecDNA | ec_hsa_17 | hg19 | chr11:77902914-119760408 | chr11 | 77,902,914 | 119,760,408 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | BCL9L,BIRC2,BIRC3,CBL,CRYAB,DDX6,GAB2,KMT2A,MAML2,MMP12,TREH,YAP1,ZBTB16 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_18 | hg19 | chr11:9113266-102459139 | chr11 | 9,113,266 | 102,459,139 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | BIRC2,BIRC3,CCND1,CTTN,DDB2,FGF3,FGF4,FOSL1,GAB2,INPPL1,INTS4,INTS5,KDM2A,LMO2,MACROD1,MALAT1,MAML2,NEAT1,PAK1,RBM14,RRAS2,RSF1,SLC3A2,SPI1,SWAP70,TRAF6,WT1,YAP1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_19 | hg19 | chr11:93361756-93362286 | chr11 | 93,361,756 | 93,362,286 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748084-78748614,chr3:111174084-111384613,chr8:127137778-131068628,chrX:116866132-116866662. |
Homo sapiens | ecDNA | ec_hsa_20 | hg19 | chr11:93361763-93362287 | chr11 | 93,361,763 | 93,362,287 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748090-78748614,chr1:238182639-238183163,chr3:111174081-111384604,chr7:40425979-55700004,chr7:63668115-65540917,chr8:127493240-131484371,chr20:54188564-54189088,chrX:7505820-7506344,chrX:17239607-17240131,chrX:23578849-23579373,chrX:72338778-72339302,chrX:73257213-73257737,chrX:131541642-131542166,chrY:2844748-2845272,chrY:15291171-15291695,chrY:16497866-16498390. |
Homo sapiens | ecDNA | ec_hsa_21 | hg19 | chr11:93361795-93362278 | chr11 | 93,361,795 | 93,362,278 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748126-78748609,chr3:111174081-111384563,chr8:127493240-131068628,chr20:54188605-54189088,chrX:23578881-23579364. |
Homo sapiens | ecDNA | ec_hsa_22 | hg19 | chr11:93361810-93362282 | chr11 | 93,361,810 | 93,362,282 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr8:127493240-131068628 |
Homo sapiens | ecDNA | ec_hsa_23 | hg19 | chr12:114042493-114782434 | chr12 | 114,042,493 | 114,782,434 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:50368739-51209733,chr12:51670201-52642673, |
Homo sapiens | ecDNA | ec_hsa_24 | hg19 | chr12:22946040-58416791 | chr12 | 22,946,040 | 58,416,791 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | AGAP2,ANP32D,ATF1,CDK4,DCD,DDIT3,ERBB3,ESPL1,GLI1,HNRNPA1,HOTAIR,KRAS,LETMD1,PA2G4,TFCP2,WNT1,WNT10B | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_25 | hg19 | chr12:2937590-132446960 | chr12 | 2,937,590 | 132,446,960 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | AGAP2,ANP32D,ASCL1,ATF1,CDK4,CDKN1B,DCD,DDIT3,ELK3,EPS8,ERBB3,ESPL1,ETV6,FGF6,FOXM1,GLI1,HMGA2,HNRNPA1,HOTAIR,IFNG,KRAS,KSR2,LDHB,LETMD1,LMO3,MDM2,MSI1,NANOG,OLR1,PA2G4,PIWIL1,PTPN11,SART3,STYK1,SYT1,TBC1D15,TBX3,TFCP2,WNT1,WNT10B,YEATS4 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_26 | hg19 | chr12:30529733-30530238 | chr12 | 30,529,733 | 30,530,238 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954. |
Homo sapiens | ecDNA | ec_hsa_27 | hg19 | chr12:30529734-30530238 | chr12 | 30,529,734 | 30,530,238 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:57920204-58962354,chr12:59589390-59862924,chr12:60627354-61180686,chr12:66478328-66810483,chr12:66886367-67158548,chr12:68932602-69417042,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957. |
Homo sapiens | ecDNA | ec_hsa_28 | hg19 | chr12:30529764-30530238 | chr12 | 30,529,764 | 30,530,238 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074. |
Homo sapiens | ecDNA | ec_hsa_29 | hg19 | chr12:30529773-30530238 | chr12 | 30,529,773 | 30,530,238 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957. |
Homo sapiens | ecDNA | ec_hsa_30 | hg19 | chr12:3573149-53227596 | chr12 | 3,573,149 | 53,227,596 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | ANP32D,ATF1,CDKN1B,EPS8,ETV6,FGF6,KRAS,LDHB,LETMD1,LMO3,NANOG,OLR1,STYK1,TFCP2,WNT1,WNT10B | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_31 | hg19 | chr12:4282258-4876809 | chr12 | 4,282,258 | 4,876,809 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | FGF6 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr2:39328-6675962,chr2:7006555-8947620,chr2:9115317-9396958,chr2:12471634-12820977,chr2:14740024-21892972,chr2:22803129-23710448,chr12:9743798-9778217. |
Homo sapiens | ecDNA | ec_hsa_32 | hg19 | chr12:49333985-84231085 | chr12 | 49,333,985 | 84,231,085 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | AGAP2,ATF1,CDK4,DCD,DDIT3,ERBB3,ESPL1,GLI1,HMGA2,HNRNPA1,HOTAIR,IFNG,LETMD1,MDM2,PA2G4,SYT1,TBC1D15,TFCP2,WNT1,WNT10B,YEATS4 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_33 | hg19 | chr12:50194461-99767466 | chr12 | 50,194,461 | 99,767,466 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | AGAP2,ATF1,CDK4,DCD,DDIT3,ELK3,ERBB3,ESPL1,GLI1,HMGA2,HNRNPA1,HOTAIR,IFNG,LETMD1,MDM2,PA2G4,SYT1,TBC1D15,TFCP2,YEATS4 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_34 | hg19 | chr12:50368739-51209733 | chr12 | 50,368,739 | 51,209,733 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | ATF1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:51670201-52642673,chr12:114042493-114782434. |
Homo sapiens | ecDNA | ec_hsa_35 | hg19 | chr12:50449904-70629864 | chr12 | 50,449,904 | 70,629,864 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | AGAP2,ATF1,CDK4,DCD,DDIT3,ERBB3,ESPL1,GLI1,HMGA2,HNRNPA1,HOTAIR,IFNG,LETMD1,MDM2,PA2G4,TFCP2,YEATS4 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_36 | hg19 | chr12:51670201-52642673 | chr12 | 51,670,201 | 52,642,673 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:50368739-51209733,chr12:114042493-114782434. |
Homo sapiens | ecDNA | ec_hsa_37 | hg19 | chr12:56837603-76223049 | chr12 | 56,837,603 | 76,223,049 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | AGAP2,CDK4,DDIT3,GLI1,HMGA2,IFNG,MDM2,TBC1D15,YEATS4 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_38 | hg19 | chr12:57209160-58725448 | chr12 | 57,209,160 | 58,725,448 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | AGAP2,CDK4,DDIT3,GLI1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_39 | hg19 | chr12:57399247-58562513 | chr12 | 57,399,247 | 58,562,513 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | AGAP2,CDK4,DDIT3,GLI1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716269-11716767,chr3:111174081-111274578,chr5:57853485-57853983,chr7:54793202-55548745,chr8:127398869-132765370,chr8:135119160-136243156,chrX:154748217-154748715. |
Homo sapiens | ecDNA | ec_hsa_40 | hg19 | chr12:57409417-58562513 | chr12 | 57,409,417 | 58,562,513 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | AGAP2,CDK4,DDIT3,GLI1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716264-11716766,chr7:54649106-55477598,chr12:70496679-70497181. |
Homo sapiens | ecDNA | ec_hsa_41 | hg19 | chr12:57496686-58315685 | chr12 | 57,496,686 | 58,315,685 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | AGAP2,CDK4,DDIT3,GLI1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716232-11716765,chr7:54786492-55477598,chr8:127442805-132832068,chr8:135105698-135663156,chr15:50377640-50378173. |
Homo sapiens | ecDNA | ec_hsa_42 | hg19 | chr12:57496689-58315685 | chr12 | 57,496,689 | 58,315,685 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | AGAP2,CDK4,DDIT3,GLI1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716211-11716729,chr7:54729139-55479139,chr8:127442805-132833866,chr8:135105698-135663156. |
Homo sapiens | ecDNA | ec_hsa_43 | hg19 | chr12:57496694-58315685 | chr12 | 57,496,694 | 58,315,685 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | AGAP2,CDK4,DDIT3,GLI1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716236-11716766,chr7:54796492-55548745,chr8:127442805-133327046,chr12:57496694-58315685,chr15:50377642-50378172. |
Homo sapiens | ecDNA | ec_hsa_44 | hg19 | chr12:57496714-58315685 | chr12 | 57,496,714 | 58,315,685 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | AGAP2,CDK4,DDIT3,GLI1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716256-11716765,chr7:54786492-55477598,chr8:127442805-132832068,chr8:135105698-135663156,chr15:50377651-50398160. |
Homo sapiens | ecDNA | ec_hsa_45 | hg19 | chr12:57496724-58315685 | chr12 | 57,496,724 | 58,315,685 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | AGAP2,CDK4,DDIT3,GLI1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716263-11716767,chr7:54786492-55477598,chr8:127442805-132832068,chr8:135105698-135663156,chr15:50377663-50378167. |
Homo sapiens | ecDNA | ec_hsa_46 | hg19 | chr12:57502937-58562513 | chr12 | 57,502,937 | 58,562,513 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | AGAP2,CDK4,DDIT3,GLI1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716267-11716767,chr5:57853483-57853983,chr7:5786928-5787428,chr7:54809106-55477598,chr8:126581168-126601667,chr8:127009013-132643908,chr8:135119160-136243156,chr12:70496679-70497179. |
Homo sapiens | ecDNA | ec_hsa_47 | hg19 | chr12:57503737-58357571 | chr12 | 57,503,737 | 58,357,571 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | AGAP2,CDK4,DDIT3,GLI1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716283-11716766,chr7:54809106-55477598,chr8:127210847-133305515,chr8:135082366-135082849,chr8:135105698-135699519. |
Homo sapiens | ecDNA | ec_hsa_48 | hg19 | chr12:57503752-58562513 | chr12 | 57,503,752 | 58,562,513 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | AGAP2,CDK4,DDIT3,GLI1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716277-11716767,chr3:111174081-111274570,chr5:57853493-57853983,chr7:54809106-55477598,chr8:105882036-105882526,chr8:127399968-132519689,chr8:135119160-136243156chr21:23357595-23358085,chrX:116866170-116866660.2.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716261-11716764,chr3:111174081-111274583,chr7:54793202-55548745,chr8:126238838-132308654,chr8:135119160-136243156. |
Homo sapiens | ecDNA | ec_hsa_49 | hg19 | chr12:57527651-58285794 | chr12 | 57,527,651 | 58,285,794 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | AGAP2,CDK4,DDIT3,GLI1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_50 | hg19 | chr12:57699728-64487930 | chr12 | 57,699,728 | 64,487,930 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | AGAP2,CDK4,DDIT3,GLI1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:Recurent Glioblastoma |
Homo sapiens | ecDNA | ec_hsa_51 | hg19 | chr12:57795337-72184414 | chr12 | 57,795,337 | 72,184,414 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | AGAP2,CDK4,DDIT3,GLI1,HMGA2,IFNG,MDM2,YEATS4 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_52 | hg19 | chr12:57802773-58628188 | chr12 | 57,802,773 | 58,628,188 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | AGAP2,CDK4,DDIT3,GLI1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr12:59234812-60099303,chr12:61166617-61688013,chr12:64090187-64424120 |
Homo sapiens | ecDNA | ec_hsa_53 | hg19 | chr12:57802773-58628883 | chr12 | 57,802,773 | 58,628,883 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | AGAP2,CDK4,DDIT3,GLI1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:Recurent Glioblastoma;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:59233812-60099303,chr12:61166630-61688013,chr12:64090187-64424120 |
Homo sapiens | ecDNA | ec_hsa_54 | hg19 | chr12:57817510-58780431 | chr12 | 57,817,510 | 58,780,431 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | AGAP2,CDK4,DDIT3,GLI1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr12:92833733-92835733 |
Homo sapiens | ecDNA | ec_hsa_55 | hg19 | chr12:57920204-58962354 | chr12 | 57,920,204 | 58,962,354 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | AGAP2,CDK4 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:59589390-59862924,chr12:60627354-61180686,chr12:66478328-66810483,chr12:66886367-67158548,chr12:68932602-69417042,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957. |
Homo sapiens | ecDNA | ec_hsa_56 | hg19 | chr12:57920205-58672862 | chr12 | 57,920,205 | 58,672,862 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | AGAP2,CDK4 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954. |
Homo sapiens | ecDNA | ec_hsa_57 | hg19 | chr12:57920218-58962354 | chr12 | 57,920,218 | 58,962,354 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | AGAP2,CDK4 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66478328-66810483,chr12:66886379-67158536,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710. |
Homo sapiens | ecDNA | ec_hsa_58 | hg19 | chr12:57920237-58962354 | chr12 | 57,920,237 | 58,962,354 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | AGAP2,CDK4 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074. |
Homo sapiens | ecDNA | ec_hsa_59 | hg19 | chr12:57920245-58669861 | chr12 | 57,920,245 | 58,669,861 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | AGAP2,CDK4 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957. |
Homo sapiens | ecDNA | ec_hsa_60 | hg19 | chr12:58030230-58278722 | chr12 | 58,030,230 | 58,278,722 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | AGAP2,CDK4 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This belongs to a DM with chr12:64406148-64811726,chr12:65415047-65738486,chr12:68410054-68646416,chr12:68920860-70279998,chr12:70478646-70774110,chr15:59880274-59880808. |
Homo sapiens | ecDNA | ec_hsa_61 | hg19 | chr12:58731394-58962354 | chr12 | 58,731,394 | 58,962,354 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957. |
Homo sapiens | ecDNA | ec_hsa_62 | hg19 | chr12:58731395-58962354 | chr12 | 58,731,395 | 58,962,354 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954. |
Homo sapiens | ecDNA | ec_hsa_63 | hg19 | chr12:59233812-60099303 | chr12 | 59,233,812 | 60,099,303 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:Recurent Glioblastoma;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:57802773-58628883,chr12:61166630-61688013,chr12:64090187-64424120 |
Homo sapiens | ecDNA | ec_hsa_64 | hg19 | chr12:59234812-60099303 | chr12 | 59,234,812 | 60,099,303 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr12:57802773-58628188,chr12:61166617-61688013,chr12:64090187-64424120 |
Homo sapiens | ecDNA | ec_hsa_65 | hg19 | chr12:59589390-59862924 | chr12 | 59,589,390 | 59,862,924 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:57920204-58962354,chr12:60627354-61180686,chr12:66478328-66810483,chr12:66886367-67158548,chr12:68932602-69417042,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957;3.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074.4.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954.5.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:60627354-61180674,chr12:66478328-66810483,chr12:66886379-67158536,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710. |
Homo sapiens | ecDNA | ec_hsa_66 | hg19 | chr12:60627354-61180648 | chr12 | 60,627,354 | 61,180,648 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957. |
Homo sapiens | ecDNA | ec_hsa_67 | hg19 | chr12:60627354-61180657 | chr12 | 60,627,354 | 61,180,657 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074. |
Homo sapiens | ecDNA | ec_hsa_68 | hg19 | chr12:60627354-61180674 | chr12 | 60,627,354 | 61,180,674 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:66478328-66810483,chr12:66886379-67158536,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710. |
Homo sapiens | ecDNA | ec_hsa_69 | hg19 | chr12:60627354-61180686 | chr12 | 60,627,354 | 61,180,686 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:57920204-58962354,chr12:59589390-59862924,chr12:66478328-66810483,chr12:66886367-67158548,chr12:68932602-69417042,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957. |
Homo sapiens | ecDNA | ec_hsa_70 | hg19 | chr12:60627354-61180687 | chr12 | 60,627,354 | 61,180,687 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954. |
Homo sapiens | ecDNA | ec_hsa_71 | hg19 | chr12:61166617-61688013 | chr12 | 61,166,617 | 61,688,013 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr12:57802773-58628188,chr12:59234812-60099303,chr12:64090187-64424120 |
Homo sapiens | ecDNA | ec_hsa_72 | hg19 | chr12:61166630-61688013 | chr12 | 61,166,630 | 61,688,013 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:Recurent Glioblastoma;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:57802773-58628883,chr12:59233812-60099303,chr12:64090187-64424120 |
Homo sapiens | ecDNA | ec_hsa_73 | hg19 | chr12:62450034-62660568 | chr12 | 62,450,034 | 62,660,568 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:63199780-63200314,chr12:65892578-65893112,chr7:54329983-55487522 |
Homo sapiens | ecDNA | ec_hsa_74 | hg19 | chr12:62674966-62695439 | chr12 | 62,674,966 | 62,695,439 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074. |
Homo sapiens | ecDNA | ec_hsa_75 | hg19 | chr12:63199780-63200314 | chr12 | 63,199,780 | 63,200,314 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:65892578-65893112,chr7:54329983-55487522,chr12:62450034-62660568 |
Homo sapiens | ecDNA | ec_hsa_76 | hg19 | chr12:64090187-64424120 | chr12 | 64,090,187 | 64,424,120 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:Recurent Glioblastoma;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:57802773-58628188,chr12:59234812-60099303,chr12:61166617-61688013;3.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:57802773-58628883,chr12:61166630-61688013,chr12:59233812-60099303 |
Homo sapiens | ecDNA | ec_hsa_77 | hg19 | chr12:64406148-64811726 | chr12 | 64,406,148 | 64,811,726 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.This ecDNA is also found in another study(PMID:32807987;eccDNA ID:ec_hsa_6417);2.Pathology:GBM;3.2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:58030230-58278722,chr12:65415047-65738486,chr12:68410054-68646416,chr12:68920860-70279998,chr12:70478646-70774110,chr15:59880274-59880808. |
Homo sapiens | ecDNA | ec_hsa_78 | hg19 | chr12:65415047-65738486 | chr12 | 65,415,047 | 65,738,486 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.This ecDNA is also found in another study(PMID:32807987;eccDNA ID:ec_hsa_6419);2.Pathology:GBM;3.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:68410054-68646416,chr12:68920860-70279998,chr12:70478646-70774110,chr15:59880274-59880808,chr12:58030230-58278722,chr12:64406148-64811726. |
Homo sapiens | ecDNA | ec_hsa_79 | hg19 | chr12:65892578-65893112 | chr12 | 65,892,578 | 65,893,112 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:62450034-62660568,chr12:63199780-63200314,chr7:54329983-55487522 |
Homo sapiens | ecDNA | ec_hsa_80 | hg19 | chr12:66478328-66795950 | chr12 | 66,478,328 | 66,795,950 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957.2.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954. |
Homo sapiens | ecDNA | ec_hsa_81 | hg19 | chr12:66478328-66810483 | chr12 | 66,478,328 | 66,810,483 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:57920204-58962354,chr12:59589390-59862924,chr12:60627354-61180686,chr12:66886367-67158548,chr12:68932602-69417042,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957.2.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66886379-67158536,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710. |
Homo sapiens | ecDNA | ec_hsa_82 | hg19 | chr12:66886366-67157415 | chr12 | 66,886,366 | 67,157,415 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954. |
Homo sapiens | ecDNA | ec_hsa_83 | hg19 | chr12:66886367-67158548 | chr12 | 66,886,367 | 67,158,548 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:57920204-58962354,chr12:59589390-59862924,chr12:60627354-61180686,chr12:66478328-66810483,chr12:68932602-69417042,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957. |
Homo sapiens | ecDNA | ec_hsa_84 | hg19 | chr12:66886379-67158536 | chr12 | 66,886,379 | 67,158,536 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66478328-66810483,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710. |
Homo sapiens | ecDNA | ec_hsa_85 | hg19 | chr12:66886397-67157415 | chr12 | 66,886,397 | 67,157,415 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074. |
Homo sapiens | ecDNA | ec_hsa_86 | hg19 | chr12:66886406-67157415 | chr12 | 66,886,406 | 67,157,415 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957. |
Homo sapiens | ecDNA | ec_hsa_87 | hg19 | chr12:68410054-68646416 | chr12 | 68,410,054 | 68,646,416 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | IFNG | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.This ecDNA is also found in another study(PMID:32807987;eccDNA ID:ec_hsa_6427);Pathology:2.GBM;3.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:58030230-58278722,chr12:64406148-64811726,chr12:65415047-65738486,chr12:68920860-70279998,chr12:70478646-70774110,chr15:59880274-59880808. |
Homo sapiens | ecDNA | ec_hsa_88 | hg19 | chr12:68920860-70279998 | chr12 | 68,920,860 | 70,279,998 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | MDM2,YEATS4 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.This ecDNA is also found in another study(PMID:32807987;eccDNA ID:ec_hsa_6430);2.Pathology:GBM;3.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:58030230-58278722,chr12:64406148-64811726,chr12:65415047-65738486,chr12:68410054-68646416,chr12:70478646-70774110,chr15:59880274-59880808. |
Homo sapiens | ecDNA | ec_hsa_89 | hg19 | chr12:68932602-69413066 | chr12 | 68,932,602 | 69,413,066 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | MDM2 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957. |
Homo sapiens | ecDNA | ec_hsa_90 | hg19 | chr12:68932602-69413075 | chr12 | 68,932,602 | 69,413,075 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | MDM2 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074. |
Homo sapiens | ecDNA | ec_hsa_91 | hg19 | chr12:68932602-69413093 | chr12 | 68,932,602 | 69,413,093 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | MDM2 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66478328-66810483,chr12:66886379-67158536,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710. |
Homo sapiens | ecDNA | ec_hsa_92 | hg19 | chr12:68932602-69417042 | chr12 | 68,932,602 | 69,417,042 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | MDM2 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:57920204-58962354,chr12:59589390-59862924,chr12:60627354-61180686,chr12:66478328-66810483,chr12:66886367-67158548,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957.2.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954. |
Homo sapiens | ecDNA | ec_hsa_93 | hg19 | chr12:70478646-70774110 | chr12 | 70,478,646 | 70,774,110 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.This ecDNA is also found in another study(PMID:32807987;eccDNA ID:ec_hsa_6434);2.Pathology:GBM;3.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:58030230-58278722,chr12:64406148-64811726,chr12:65415047-65738486,chr12:68410054-68646416,chr12:68920860-70279998,chr15:59880274-59880808. |
Homo sapiens | ecDNA | ec_hsa_94 | hg19 | chr12:70496679-70497179 | chr12 | 70,496,679 | 70,497,179 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716267-11716767,chr5:57853483-57853983,chr7:5786928-5787428,chr7:54809106-55477598,chr8:126581168-126601667,chr8:127009013-132643908,chr8:135119160-136243156,chr12:57502937-58562513. |
Homo sapiens | ecDNA | ec_hsa_95 | hg19 | chr12:70496679-70497181 | chr12 | 70,496,679 | 70,497,181 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716264-11716766,chr7:54649106-55477598,chr12:57409417-58562513, |
Homo sapiens | ecDNA | ec_hsa_96 | hg19 | chr12:73584312-74472853 | chr12 | 73,584,312 | 74,472,853 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954. |
Homo sapiens | ecDNA | ec_hsa_97 | hg19 | chr12:73584313-74472853 | chr12 | 73,584,313 | 74,472,853 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:57920204-58962354,chr12:59589390-59862924,chr12:60627354-61180686,chr12:66478328-66810483,chr12:66886367-67158548,chr12:68932602-69417042,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957. |
Homo sapiens | ecDNA | ec_hsa_98 | hg19 | chr12:73584325-74472853 | chr12 | 73,584,325 | 74,472,853 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66478328-66810483,chr12:66886379-67158536,chr12:68932602-69413093,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710. |
Homo sapiens | ecDNA | ec_hsa_99 | hg19 | chr12:73584343-74472853 | chr12 | 73,584,343 | 74,472,853 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074. |
Homo sapiens | ecDNA | ec_hsa_100 | hg19 | chr12:73584352-74472853 | chr12 | 73,584,352 | 74,472,853 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957. |
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