Species
stringclasses 2
values | eccDNA type
stringclasses 4
values | eccDNA ID
stringlengths 9
14
| Genome version
stringclasses 2
values | Location
stringlengths 13
25
| Chr
stringclasses 25
values | Start
float64 1
249M
⌀ | End
float64 1.47k
249M
⌀ | Health/Disease
stringclasses 2
values | Tissue/Cell line
stringlengths 3
56
| Disease Name
stringlengths 7
51
| Experiment/Prediction
stringclasses 2
values | Validation Strategies
stringlengths 3
141
| Treatment
stringclasses 11
values | Oncogene
stringlengths 2
237
| Source
stringlengths 13
295
| Library type
stringclasses 9
values | Pubmed ID
stringlengths 7
13
| Public Date
stringclasses 25
values | Function/Characteristic of ecDNA
stringlengths 13
494
| Remarks
stringlengths 2
2.89k
|
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Homo sapiens | ecDNA | ec_hsa_401 | hg19 | chr8:127137778-131068628 | chr8 | 127,137,778 | 131,068,628 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | MYC,PCAT1,PVT1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748084-78748614,chr3:111174084-111384613,chr11:93361756-93362286,chrX:116866132-116866662. |
Homo sapiens | ecDNA | ec_hsa_402 | hg19 | chr8:127210847-133305515 | chr8 | 127,210,847 | 133,305,515 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | MYC,PCAT1,PVT1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716283-11716766,chr7:54809106-55477598,chr8:135082366-135082849,chr8:135105698-135699519,chr12:57503737-58357571. |
Homo sapiens | ecDNA | ec_hsa_403 | hg19 | chr8:127398869-132765370 | chr8 | 127,398,869 | 132,765,370 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | MYC,PCAT1,PVT1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716269-11716767,chr3:111174081-111274578,chr5:57853485-57853983,chr7:54793202-55548745,chr8:135119160-136243156,chr12:57399247-58562513,chrX:154748217-154748715. |
Homo sapiens | ecDNA | ec_hsa_404 | hg19 | chr8:127399968-132519689 | chr8 | 127,399,968 | 132,519,689 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | MYC,PCAT1,PVT1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716277-11716767,chr3:111174081-111274570,chr5:57853493-57853983,chr7:54809106-55477598,chr8:105882036-105882526,chr8:135119160-136243156chr12:57503752-58562513,chr21:23357595-23358085,chrX:116866170-116866660. |
Homo sapiens | ecDNA | ec_hsa_405 | hg19 | chr8:127442805-132832068 | chr8 | 127,442,805 | 132,832,068 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | MYC,PCAT1,PVT1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716263-11716767,chr7:54786492-55477598,chr8:135105698-135663156,chr12:57496724-58315685,chr15:50377663-50378167.2.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716232-11716765,chr7:54786492-55477598,chr8:135105698-135663156,chr12:57496686-58315685,chr15:50377640-50378173.3.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716232-11716765,chr7:54786492-55477598,chr8:135105698-135663156,chr12:57496686-58315685,chr15:50377640-50378173.4.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716256-11716765,chr7:54786492-55477598,chr8:135105698-135663156,chr12:57496714-58315685,chr15:50377651-50398160. |
Homo sapiens | ecDNA | ec_hsa_406 | hg19 | chr8:127442805-132833866 | chr8 | 127,442,805 | 132,833,866 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | MYC,PCAT1,PVT1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716211-11716729,chr7:54729139-55479139,chr8:135105698-135663156,chr12:57496689-58315685. |
Homo sapiens | ecDNA | ec_hsa_407 | hg19 | chr8:127442805-133327046 | chr8 | 127,442,805 | 133,327,046 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | MYC,PCAT1,PVT1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716236-11716766,chr7:54796492-55548745,chr8:135105698-135663156,chr12:57496694-58315685,chr15:50377642-50378172. |
Homo sapiens | ecDNA | ec_hsa_408 | hg19 | chr8:127493240-131068628 | chr8 | 127,493,240 | 131,068,628 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | MYC,PCAT1,PVT1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748126-78748609,chr3:111174081-111384563,chr11:93361795-93362278,chr20:54188605-54189088,chrX:23578881-23579364.2.This amplicon together with multiple chromosome segments to form the ecDNA:chr11:93361810-93362282 |
Homo sapiens | ecDNA | ec_hsa_409 | hg19 | chr8:127493240-131484371 | chr8 | 127,493,240 | 131,484,371 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | MYC,PCAT1,PVT1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748090-78748614,chr1:238182639-238183163,chr3:111174081-111384604,chr7:40425979-55700004,chr7:63668115-65540917,chr11:93361763-93362287,chr20:54188564-54189088,chrX:7505820-7506344,chrX:17239607-17240131,chrX:23578849-23579373,chrX:72338778-72339302,chrX:73257213-73257737,chrX:131541642-131542166,chrY:2844748-2845272,chrY:15291171-15291695,chrY:16497866-16498390. |
Homo sapiens | ecDNA | ec_hsa_410 | hg19 | chr8:127637213-131119347 | chr8 | 127,637,213 | 131,119,347 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | MYC,PCAT1,PVT1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_411 | hg19 | chr8:127921175-129579202 | chr8 | 127,921,175 | 129,579,202 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | MYC,PCAT1,PVT1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_412 | hg19 | chr8:128042384-136223087 | chr8 | 128,042,384 | 136,223,087 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | MYC,PVT1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_413 | hg19 | chr8:128139101-135642780 | chr8 | 128,139,101 | 135,642,780 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | MYC,PVT1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_414 | hg19 | chr8:135082366-135082849 | chr8 | 135,082,366 | 135,082,849 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716283-11716766,chr7:54809106-55477598,chr8:127210847-133305515,chr8:135105698-135699519,chr12:57503737-58357571. |
Homo sapiens | ecDNA | ec_hsa_415 | hg19 | chr8:135105698-135663156 | chr8 | 135,105,698 | 135,663,156 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716211-11716729,chr7:54729139-55479139,chr8:127442805-132833866,chr12:57496689-58315685.2.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716263-11716767,chr7:54786492-55477598,chr8:127442805-132832068,chr12:57496724-58315685,chr15:50377663-50378167.3.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716232-11716765,chr7:54786492-55477598,chr8:127442805-132832068,chr12:57496686-58315685,chr15:50377640-50378173.4.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716256-11716765,chr7:54786492-55477598,chr8:127442805-132832068,chr12:57496714-58315685,chr15:50377651-50398160.5.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716236-11716766,chr7:54796492-55548745,chr8:127442805-133327046,chr12:57496694-58315685,chr15:50377642-50378172. |
Homo sapiens | ecDNA | ec_hsa_416 | hg19 | chr8:135105698-135699519 | chr8 | 135,105,698 | 135,699,519 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716283-11716766,chr7:54809106-55477598,chr8:127210847-133305515,chr8:135082366-135082849,chr12:57503737-58357571. |
Homo sapiens | ecDNA | ec_hsa_417 | hg19 | chr8:135119160-136243156 | chr8 | 135,119,160 | 136,243,156 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716267-11716767,chr5:57853483-57853983,chr7:5786928-5787428,chr7:54809106-55477598,chr8:126581168-126601667,chr8:127009013-132643908,chr12:57502937-58562513,chr12:70496679-70497179.2.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716277-11716767,chr3:111174081-111274570,chr5:57853493-57853983,chr7:54809106-55477598,chr8:105882036-105882526,chr8:127399968-132519689,chr12:57503752-58562513,chr21:23357595-23358085,chrX:116866170-116866660.3.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716261-11716764,chr3:111174081-111274583,chr7:54793202-55548745,chr8:126238838-132308654,chr12:57503752-58562513.4.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716269-11716767,chr3:111174081-111274578,chr5:57853485-57853983,chr7:54793202-55548745,chr8:127398869-132765370,chr12:57399247-58562513,chrX:154748217-154748715. |
Homo sapiens | ecDNA | ec_hsa_418 | hg19 | chr8:2793207-143012174 | chr8 | 2,793,207 | 143,012,174 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | ADAM28,ADAM9,BAALC,BLK,BRF2,CDH17,COPS5,DDHD2,DUSP26,E2F5,EIF3E,FGFR1,INTS8,KAT6A,LAPTM4B,LSM1,MFHAS1,MOS,MTDH,MYC,PBK,PCAT1,PLAG1,PRDM14,PTK2B,PTP4A3,PVT1,RUNX1T1,TPD52,TRIB1,YWHAZ,ZNF703 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_419 | hg19 | chr8:80513281-92980359 | chr8 | 80,513,281 | 92,980,359 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | E2F5,RUNX1T1,TPD52 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_420 | hg19 | chr8:93859282-114607122 | chr8 | 93,859,282 | 114,607,122 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | BAALC,CDH17,EIF3E,INTS8,LAPTM4B,MTDH,YWHAZ | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:Astrocytoma |
Homo sapiens | ecDNA | ec_hsa_421 | hg19 | chr9:11029911-15061738 | chr9 | 11,029,911 | 15,061,738 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | NFIB,TYRP1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr13:88380423-88381059. |
Homo sapiens | ecDNA | ec_hsa_422 | hg19 | chr9:12935582-20346591 | chr9 | 12,935,582 | 20,346,591 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | MLLT3,NFIB,PSIP1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:Oligoastrocytoma |
Homo sapiens | ecDNA | ec_hsa_423 | hg19 | chr9:18190662-38267761 | chr9 | 18,190,662 | 38,267,761 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | MLLT3 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_424 | hg19 | chr9:19225169-34666143 | chr9 | 19,225,169 | 34,666,143 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | MLLT3 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_425 | hg19 | chrX:106072756-106073253 | chrX | 106,072,756 | 106,073,253 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:116204659-116624503,chr7:145542807-146013736,chrX:111473619-111474116. |
Homo sapiens | ecDNA | ec_hsa_426 | hg19 | chrX:107240015-107240575 | chrX | 107,240,015 | 107,240,575 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr1:154210485-154211045,chr3:98554714-98555274,chr7:53437686-57065330,chr7:57477300-57497860,chr7:65160992-65361551, |
Homo sapiens | ecDNA | ec_hsa_427 | hg19 | chrX:111473619-111474116 | chrX | 111,473,619 | 111,474,116 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:116204659-116624503,chr7:145542807-146013736,chrX:106072756-106073253. |
Homo sapiens | ecDNA | ec_hsa_428 | hg19 | chrX:116866132-116866662 | chrX | 116,866,132 | 116,866,662 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748084-78748614,chr3:111174084-111384613,chr8:127137778-131068628,chr11:93361756-93362286. |
Homo sapiens | ecDNA | ec_hsa_429 | hg19 | chrX:116866170-116866660 | chrX | 116,866,170 | 116,866,660 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716277-11716767,chr3:111174081-111274570,chr5:57853493-57853983,chr7:54809106-55477598,chr8:105882036-105882526,chr8:127399968-132519689,chr8:135119160-136243156chr12:57503752-58562513,chr21:23357595-23358085, |
Homo sapiens | ecDNA | ec_hsa_430 | hg19 | chrX:11692735-11693266 | chrX | 11,692,735 | 11,693,266 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:203360625-204898652 |
Homo sapiens | ecDNA | ec_hsa_431 | hg19 | chrX:11692808-11693308 | chrX | 11,692,808 | 11,693,308 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr1:203177968-204957662,chr4:54345291-55107618,chr4:55629356-55629856,chr6:100688972-100689472,chrX:30639531-30640031. |
Homo sapiens | ecDNA | ec_hsa_432 | hg19 | chrX:11933205-11973678 | chrX | 11,933,205 | 11,973,678 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074. |
Homo sapiens | ecDNA | ec_hsa_433 | hg19 | chrX:124484644-124485162 | chrX | 124,484,644 | 124,485,162 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811742-7061780,chr2:14930877-15241168,chr2:15586615-16607368,chr2:24976652-25251094,chr2:25431975-25432494,chr2:70700509-70701027,chr2:88274596-88295113,chr2:117784681-118114666,chr2:136721093-137773677,chr2:145272882-145772117,chr2:153212545-153453279,chr2:170029734-172448527,chr2:206666463-206877046,chrX:53934948-53935466. |
Homo sapiens | ecDNA | ec_hsa_434 | hg19 | chrX:131541642-131542166 | chrX | 131,541,642 | 131,542,166 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748090-78748614,chr1:238182639-238183163,chr3:111174081-111384604,chr7:40425979-55700004,chr7:63668115-65540917,chr8:127493240-131484371,chr11:93361763-93362287,chr20:54188564-54189088,chrX:7505820-7506344,chrX:17239607-17240131,chrX:23578849-23579373,chrX:72338778-72339302,chrX:73257213-73257737,chrY:2844748-2845272,chrY:15291171-15291695,chrY:16497866-16498390. |
Homo sapiens | ecDNA | ec_hsa_435 | hg19 | chrX:133253100-133253601 | chrX | 133,253,100 | 133,253,601 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811404-7056157,chr2:14930877-16607368,chr2:24976652-25251094,chr2:25431989-25432491,chr2:44698988-44719489,chr2:70700526-70701027,chr2:88294192-88294693,chr2:117784681-118114666,chr2:136874997-137798352,chr2:145245907-145748806,chr2:153212545-153454678,chr2:170029734-172038781,chr2:206666463-206877029,chr4:129319969-129320470. |
Homo sapiens | ecDNA | ec_hsa_436 | hg19 | chrX:133253122-133253599 | chrX | 133,253,122 | 133,253,599 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811427-7056157,chr2:14930877-16609687,chr2:24976652-25251094,chr2:25432017-25432497,chr2:44699024-44699501,chr2:70700543-70701020,chr2:88274599-88295075,chr2:117784681-118114666,chr2:136869536-137939536,chr2:145263828-145743220,chr2:153212545-153454687,chr2:170116857-172249767,chr2:206666463-206877006. |
Homo sapiens | ecDNA | ec_hsa_437 | hg19 | chrX:14827449-14827953 | chrX | 14,827,449 | 14,827,953 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:57920204-58962354,chr12:59589390-59862924,chr12:60627354-61180686,chr12:66478328-66810483,chr12:66886367-67158548,chr12:68932602-69417042,chr12:73584313-74472853,chr14:96897077-96897581,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957. |
Homo sapiens | ecDNA | ec_hsa_438 | hg19 | chrX:14827449-14827954 | chrX | 14,827,449 | 14,827,954 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954. |
Homo sapiens | ecDNA | ec_hsa_439 | hg19 | chrX:14827462-14827954 | chrX | 14,827,462 | 14,827,954 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66478328-66810483,chr12:66886379-67158536,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710. |
Homo sapiens | ecDNA | ec_hsa_440 | hg19 | chrX:14827480-14827954 | chrX | 14,827,480 | 14,827,954 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074. |
Homo sapiens | ecDNA | ec_hsa_441 | hg19 | chrX:14827487-14827952 | chrX | 14,827,487 | 14,827,952 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957. |
Homo sapiens | ecDNA | ec_hsa_442 | hg19 | chrX:154748217-154748715 | chrX | 154,748,217 | 154,748,715 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716269-11716767,chr3:111174081-111274578,chr5:57853485-57853983,chr7:54793202-55548745,chr8:127398869-132765370,chr8:135119160-136243156,chr12:57399247-58562513. |
Homo sapiens | ecDNA | ec_hsa_443 | hg19 | chrX:154779218-154779710 | chrX | 154,779,218 | 154,779,710 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66478328-66810483,chr12:66886379-67158536,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956. |
Homo sapiens | ecDNA | ec_hsa_444 | hg19 | chrX:17239607-17240131 | chrX | 17,239,607 | 17,240,131 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748090-78748614,chr1:238182639-238183163,chr3:111174081-111384604,chr7:40425979-55700004,chr7:63668115-65540917,chr8:127493240-131484371,chr11:93361763-93362287,chr20:54188564-54189088,chrX:7505820-7506344,chrX:23578849-23579373,chrX:72338778-72339302,chrX:73257213-73257737,chrX:131541642-131542166,chrY:2844748-2845272,chrY:15291171-15291695,chrY:16497866-16498390. |
Homo sapiens | ecDNA | ec_hsa_445 | hg19 | chrX:19429616-24808631 | chrX | 19,429,616 | 24,808,631 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_446 | hg19 | chrX:20863666-20864171 | chrX | 20,863,666 | 20,864,171 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954. |
Homo sapiens | ecDNA | ec_hsa_447 | hg19 | chrX:23578849-23579373 | chrX | 23,578,849 | 23,579,373 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748090-78748614,chr1:238182639-238183163,chr3:111174081-111384604,chr7:40425979-55700004,chr7:63668115-65540917,chr8:127493240-131484371,chr11:93361763-93362287,chr20:54188564-54189088,chrX:7505820-7506344,chrX:17239607-17240131,chrX:72338778-72339302,chrX:73257213-73257737,chrX:131541642-131542166,chrY:2844748-2845272,chrY:15291171-15291695,chrY:16497866-16498390. |
Homo sapiens | ecDNA | ec_hsa_448 | hg19 | chrX:23578881-23579364 | chrX | 23,578,881 | 23,579,364 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748126-78748609,chr3:111174081-111384563,chr8:127493240-131068628,chr11:93361795-93362278,chr20:54188605-54189088. |
Homo sapiens | ecDNA | ec_hsa_449 | hg19 | chrX:26704172-26704676 | chrX | 26,704,172 | 26,704,676 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:57920204-58962354,chr12:59589390-59862924,chr12:60627354-61180686,chr12:66478328-66810483,chr12:66886367-67158548,chr12:68932602-69417042,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957. |
Homo sapiens | ecDNA | ec_hsa_450 | hg19 | chrX:30639531-30640031 | chrX | 30,639,531 | 30,640,031 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:54345291-55107618,chr4:55629356-55629856,chr6:100688972-100689472,chrX:11692808-11693308,chrX:30639531-30640031. |
Homo sapiens | ecDNA | ec_hsa_451 | hg19 | chrX:3105412-14057531 | chrX | 3,105,412 | 14,057,531 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | GPM6B | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:Oligodendroglioma |
Homo sapiens | ecDNA | ec_hsa_452 | hg19 | chrX:32024870-32025375 | chrX | 32,024,870 | 32,025,375 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954. |
Homo sapiens | ecDNA | ec_hsa_453 | hg19 | chrX:32024883-32025375 | chrX | 32,024,883 | 32,025,375 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66478328-66810483,chr12:66886379-67158536,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710. |
Homo sapiens | ecDNA | ec_hsa_454 | hg19 | chrX:32024901-32025375 | chrX | 32,024,901 | 32,025,375 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074. |
Homo sapiens | ecDNA | ec_hsa_455 | hg19 | chrX:32024910-32025375 | chrX | 32,024,910 | 32,025,375 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957. |
Homo sapiens | ecDNA | ec_hsa_456 | hg19 | chrX:53177860-53178325 | chrX | 53,177,860 | 53,178,325 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957. |
Homo sapiens | ecDNA | ec_hsa_457 | hg19 | chrX:53934948-53935466 | chrX | 53,934,948 | 53,935,466 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811742-7061780,chr2:14930877-15241168,chr2:15586615-16607368,chr2:24976652-25251094,chr2:25431975-25432494,chr2:70700509-70701027,chr2:88274596-88295113,chr2:117784681-118114666,chr2:136721093-137773677,chr2:145272882-145772117,chr2:153212545-153453279,chr2:170029734-172448527,chr2:206666463-206877046,chrX:124484644-124485162. |
Homo sapiens | ecDNA | ec_hsa_458 | hg19 | chrX:54008997-54237966 | chrX | 54,008,997 | 54,237,966 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:Anaplastic Oligodendroglioma |
Homo sapiens | ecDNA | ec_hsa_459 | hg19 | chrX:54907463-54907968 | chrX | 54,907,463 | 54,907,968 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954. |
Homo sapiens | ecDNA | ec_hsa_460 | hg19 | chrX:55860508-55860982 | chrX | 55,860,508 | 55,860,982 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074. |
Homo sapiens | ecDNA | ec_hsa_461 | hg19 | chrX:72338778-72339302 | chrX | 72,338,778 | 72,339,302 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748090-78748614,chr1:238182639-238183163,chr3:111174081-111384604,chr7:40425979-55700004,chr7:63668115-65540917,chr8:127493240-131484371,chr11:93361763-93362287,chr20:54188564-54189088,chrX:7505820-7506344,chrX:17239607-17240131,chrX:23578849-23579373,chrX:73257213-73257737,chrX:131541642-131542166,chrY:2844748-2845272,chrY:15291171-15291695,chrY:16497866-16498390. |
Homo sapiens | ecDNA | ec_hsa_462 | hg19 | chrX:73257213-73257737 | chrX | 73,257,213 | 73,257,737 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748090-78748614,chr1:238182639-238183163,chr3:111174081-111384604,chr7:40425979-55700004,chr7:63668115-65540917,chr8:127493240-131484371,chr11:93361763-93362287,chr20:54188564-54189088,chrX:7505820-7506344,chrX:17239607-17240131,chrX:23578849-23579373,chrX:72338778-72339302,chrX:73257213-73257737,chrY:2844748-2845272,chrY:15291171-15291695,chrY:16497866-16498390. |
Homo sapiens | ecDNA | ec_hsa_463 | hg19 | chrX:73314676-73315141 | chrX | 73,314,676 | 73,315,141 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957. |
Homo sapiens | ecDNA | ec_hsa_464 | hg19 | chrX:7505820-7506344 | chrX | 7,505,820 | 7,506,344 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748090-78748614,chr1:238182639-238183163,chr3:111174081-111384604,chr7:40425979-55700004,chr7:63668115-65540917,chr8:127493240-131484371,chr11:93361763-93362287,chr20:54188564-54189088,chrX:17239607-17240131,chrX:23578849-23579373,chrX:72338778-72339302,chrX:73257213-73257737,chrX:131541642-131542166,chrY:2844748-2845272,chrY:15291171-15291695,chrY:16497866-16498390. |
Homo sapiens | ecDNA | ec_hsa_465 | hg19 | chrX:76062796-76063300 | chrX | 76,062,796 | 76,063,300 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:57920204-58962354,chr12:59589390-59862924,chr12:60627354-61180686,chr12:66478328-66810483,chr12:66886367-67158548,chr12:68932602-69417042,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:77334379-77334883,chrX:79182453-79182957. |
Homo sapiens | ecDNA | ec_hsa_466 | hg19 | chrX:76062808-76063300 | chrX | 76,062,808 | 76,063,300 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66478328-66810483,chr12:66886379-67158536,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710. |
Homo sapiens | ecDNA | ec_hsa_467 | hg19 | chrX:76062821-76063295 | chrX | 76,062,821 | 76,063,295 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074. |
Homo sapiens | ecDNA | ec_hsa_468 | hg19 | chrX:76062835-76063300 | chrX | 76,062,835 | 76,063,300 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:77334418-77334883,chrX:79182492-79182957. |
Homo sapiens | ecDNA | ec_hsa_469 | hg19 | chrX:77334378-77334883 | chrX | 77,334,378 | 77,334,883 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:79182449-79182954. |
Homo sapiens | ecDNA | ec_hsa_470 | hg19 | chrX:77334379-77334883 | chrX | 77,334,379 | 77,334,883 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:57920204-58962354,chr12:59589390-59862924,chr12:60627354-61180686,chr12:66478328-66810483,chr12:66886367-67158548,chr12:68932602-69417042,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:79182453-79182957. |
Homo sapiens | ecDNA | ec_hsa_471 | hg19 | chrX:77334391-77334883 | chrX | 77,334,391 | 77,334,883 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66478328-66810483,chr12:66886379-67158536,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:79182464-79182956,chrX:154779218-154779710. |
Homo sapiens | ecDNA | ec_hsa_472 | hg19 | chrX:77334409-77334883 | chrX | 77,334,409 | 77,334,883 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074. |
Homo sapiens | ecDNA | ec_hsa_473 | hg19 | chrX:77334418-77334883 | chrX | 77,334,418 | 77,334,883 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:79182492-79182957. |
Homo sapiens | ecDNA | ec_hsa_474 | hg19 | chrX:78284470-78304943 | chrX | 78,284,470 | 78,304,943 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:79182478-79182952,chrX:85022600-85023074. |
Homo sapiens | ecDNA | ec_hsa_475 | hg19 | chrX:78466337-78466845 | chrX | 78,466,337 | 78,466,845 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:54358761-55263940 |
Homo sapiens | ecDNA | ec_hsa_476 | hg19 | chrX:79182449-79182954 | chrX | 79,182,449 | 79,182,954 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954. |
Homo sapiens | ecDNA | ec_hsa_477 | hg19 | chrX:79182453-79182957 | chrX | 79,182,453 | 79,182,957 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:57920204-58962354,chr12:59589390-59862924,chr12:60627354-61180686,chr12:66478328-66810483,chr12:66886367-67158548,chr12:68932602-69417042,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883. |
Homo sapiens | ecDNA | ec_hsa_478 | hg19 | chrX:79182464-79182956 | chrX | 79,182,464 | 79,182,956 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66478328-66810483,chr12:66886379-67158536,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:154779218-154779710. |
Homo sapiens | ecDNA | ec_hsa_479 | hg19 | chrX:79182478-79182952 | chrX | 79,182,478 | 79,182,952 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:85022600-85023074. |
Homo sapiens | ecDNA | ec_hsa_480 | hg19 | chrX:79182492-79182957 | chrX | 79,182,492 | 79,182,957 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883. |
Homo sapiens | ecDNA | ec_hsa_481 | hg19 | chrX:84073018-84073515 | chrX | 84,073,018 | 84,073,515 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:116204659-116625155,chr7:145012779-145053275,chr7:145073024-145073521,chr7:145540657-146013736,chrY:18473310-18473807. |
Homo sapiens | ecDNA | ec_hsa_482 | hg19 | chrX:85022600-85023074 | chrX | 85,022,600 | 85,023,074 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952, |
Homo sapiens | ecDNA | ec_hsa_483 | hg19 | chrY:13984528-25333853 | chrY | 13,984,528 | 25,333,853 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | RBMY1A1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:116204659-116608749,chr7:145542807-146013736,chr7:146062245-146101861. |
Homo sapiens | ecDNA | ec_hsa_484 | hg19 | chrY:14481730-26079061 | chrY | 14,481,730 | 26,079,061 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | RBMY1A1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_485 | hg19 | chrY:15291171-15291695 | chrY | 15,291,171 | 15,291,695 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748090-78748614,chr1:238182639-238183163,chr3:111174081-111384604,chr7:40425979-55700004,chr7:63668115-65540917,chr8:127493240-131484371,chr11:93361763-93362287,chr20:54188564-54189088,chrX:7505820-7506344,chrX:17239607-17240131,chrX:23578849-23579373,chrX:72338778-72339302,chrX:73257213-73257737,chrX:131541642-131542166,chrY:2844748-2845272,chrY:16497866-16498390. |
Homo sapiens | ecDNA | ec_hsa_486 | hg19 | chrY:16497866-16498390 | chrY | 16,497,866 | 16,498,390 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748090-78748614,chr1:238182639-238183163,chr3:111174081-111384604,chr7:40425979-55700004,chr7:63668115-65540917,chr8:127493240-131484371,chr11:93361763-93362287,chr20:54188564-54189088,chrX:7505820-7506344,chrX:17239607-17240131,chrX:23578849-23579373,chrX:72338778-72339302,chrX:73257213-73257737,chrX:131541642-131542166,chrY:2844748-2845272,chrY:15291171-15291695. |
Homo sapiens | ecDNA | ec_hsa_487 | hg19 | chrY:18473310-18473807 | chrY | 18,473,310 | 18,473,807 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:116204659-116625155,chr7:145012779-145053275,chr7:145073024-145073521,chr7:145540657-146013736,chrX:84073018-84073515. |
Homo sapiens | ecDNA | ec_hsa_488 | hg19 | chrY:2844748-2845272 | chrY | 2,844,748 | 2,845,272 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748090-78748614,chr1:238182639-238183163,chr3:111174081-111384604,chr7:40425979-55700004,chr7:63668115-65540917,chr8:127493240-131484371,chr11:93361763-93362287,chr20:54188564-54189088,chrX:7505820-7506344,chrX:17239607-17240131,chrX:23578849-23579373,chrX:72338778-72339302,chrX:73257213-73257737,chrX:131541642-131542166,chrY:15291171-15291695,chrY:16497866-16498390. |
Homo sapiens | ecDNA | ec_hsa_489 | hg19 | chrY:58872710-59072984 | chrY | 58,872,710 | 59,072,984 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chrY:6618334-28783837 |
Homo sapiens | ecDNA | ec_hsa_490 | hg19 | chrY:6593783-10008597 | chrY | 6,593,783 | 10,008,597 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | TSPY1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:190921886-190942399 |
Homo sapiens | ecDNA | ec_hsa_491 | hg19 | chrY:6618334-28783837 | chrY | 6,618,334 | 28,783,837 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | RBMY1A1,TSPY1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chrY:58872710-59072984 |
Homo sapiens | ecDNA | ec_hsa_492 | hg19 | chr7:54903890-55309726 | chr7 | 54,903,890 | 55,309,726 | Disease | Brain | Glioblastoma | Experiment | FISH&Quantitative PCR&Chromosome Walking | Not Available | Not Available | By literature | Not Available | 20056677 | 2010 | Copy number amplification | Not Available |
Homo sapiens | ecDNA | ec_hsa_493 | hg19 | chr7:55141708-55323512 | chr7 | 55,141,708 | 55,323,512 | Disease | Brain | Glioblastoma | Experiment | FISH&Quantitative PCR&Chromosome Walking | Not Available | Not Available | By literature | Not Available | 20056677 | 2010 | Copy number amplification | This amplicon together with multiple chromosome segments to form the ecDNA:chr5:16058003-16058085,chr7:55727859-55728147. |
Homo sapiens | ecDNA | ec_hsa_494 | hg19 | chr5:16058003-16058085 | chr5 | 16,058,003 | 16,058,085 | Disease | Brain | Glioblastoma | Experiment | FISH&Quantitative PCR&Chromosome Walking | Not Available | Not Available | By literature | Not Available | 20056677 | 2010 | Copy number amplification | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:55141708-55323512,chr7:55727859-55728147. |
Homo sapiens | ecDNA | ec_hsa_495 | hg19 | chr7:55727859-55728147 | chr7 | 55,727,859 | 55,728,147 | Disease | Brain | Glioblastoma | Experiment | FISH&Quantitative PCR&Chromosome Walking | Not Available | Not Available | By literature | Not Available | 20056677 | 2010 | Copy number amplification | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:55141708-55323512,chr5:16058003-16058085. |
Homo sapiens | ecDNA | ec_hsa_496 | hg19 | chr5:11428177-11802754 | chr5 | 11,428,177 | 11,802,754 | Disease | Brain | Glioblastoma | Experiment | FISH&Quantitative PCR&Chromosome Walking | Not Available | Not Available | By literature | Not Available | 20056677 | 2010 | Copy number amplification | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:55225068-55277546 |
Homo sapiens | ecDNA | ec_hsa_497 | hg19 | chr7:55225068-55277546 | chr7 | 55,225,068 | 55,277,546 | Disease | Brain | Glioblastoma | Experiment | FISH&Quantitative PCR&Chromosome Walking | Not Available | Not Available | By literature | Not Available | 20056677 | 2010 | Copy number amplification | This amplicon together with multiple chromosome segments to form the ecDNA:chr5:11428177-11802754 |
Homo sapiens | ecDNA | ec_hsa_498 | hg19 | chr1:203673145-204659000 | chr1 | 203,673,145 | 204,659,000 | Disease | Brain | Glioblastoma | Experiment | FISH&Quantitative PCR&Chromosome Walking | Not Available | Not Available | By literature | Not Available | 20056677 | 2010 | Copy number amplification | Not Available |
Homo sapiens | ecDNA | ec_hsa_499 | hg19 | chr5:11153687-13433241 | chr5 | 11,153,687 | 13,433,241 | Disease | Brain | Glioblastoma | Experiment | FISH&Quantitative PCR&Chromosome Walking | Not Available | Not Available | By literature | Not Available | 20056677 | 2010 | Copy number amplification | This amplicon together with multiple chromosome segments to form the ecDNA:chr9:14439810-15510315,chr5:15720175-16140433,chr9:2561839-2986369,chr5:56354804-56497898,chr5:1104330-1300928. |
Homo sapiens | ecDNA | ec_hsa_500 | hg19 | chr9:14439810-15510315 | chr9 | 14,439,810 | 15,510,315 | Disease | Brain | Glioblastoma | Experiment | FISH&Quantitative PCR&Chromosome Walking | Not Available | Not Available | By literature | Not Available | 20056677 | 2010 | Copy number amplification | This amplicon together with multiple chromosome segments to form the ecDNA:chr5:11153687-13433241,chr5:15720175-16140433,chr9:2561839-2986369,chr5:56354804-56497898,chr5:1104330-1300928. |