Species
stringclasses 2
values | eccDNA type
stringclasses 4
values | eccDNA ID
stringlengths 9
14
| Genome version
stringclasses 2
values | Location
stringlengths 13
25
| Chr
stringclasses 25
values | Start
float64 1
249M
⌀ | End
float64 1.47k
249M
⌀ | Health/Disease
stringclasses 2
values | Tissue/Cell line
stringlengths 3
56
| Disease Name
stringlengths 7
51
| Experiment/Prediction
stringclasses 2
values | Validation Strategies
stringlengths 3
141
| Treatment
stringclasses 11
values | Oncogene
stringlengths 2
237
| Source
stringlengths 13
295
| Library type
stringclasses 9
values | Pubmed ID
stringlengths 7
13
| Public Date
stringclasses 25
values | Function/Characteristic of ecDNA
stringlengths 13
494
| Remarks
stringlengths 2
2.89k
|
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Homo sapiens | ecDNA | ec_hsa_301 | hg19 | chr7:13514639-118075153 | chr7 | 13,514,639 | 118,075,153 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | AKAP9,AQP1,BAIAP2L1,CAV1,CBLL1,CDK14,CDK6,CROT,CUX1,DLX5,EGFR,ERVW-1,ETV1,GLI3,HOTTIP,HOXA1,HOXA9,HOXA-AS2,HSPB1,IKZF1,MACC1,MET,RINT1,SMURF1,TAC1,TRIP6,TWIST1,WNT2,YWHAG | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_302 | hg19 | chr7:13514639-141827777 | chr7 | 13,514,639 | 141,827,777 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | AKAP9,AQP1,BAIAP2L1,BRAF,CAV1,CBLL1,CDK14,CDK6,CROT,CUX1,DLX5,EGFR,ERVW-1,ETV1,FEZF1,GLI3,HOTTIP,HOXA1,HOXA9,HOXA-AS2,HSPB1,IKZF1,MACC1,MET,PAX4,RINT1,SMO,SMURF1,TAC1,TMEM140,TRIP6,TWIST1,WNT2,YWHAG | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_303 | hg19 | chr7:145012779-145053275 | chr7 | 145,012,779 | 145,053,275 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:116204659-116625155,chr7:145073024-145073521,chr7:145540657-146013736,chrX:84073018-84073515,chrY:18473310-18473807. |
Homo sapiens | ecDNA | ec_hsa_304 | hg19 | chr7:145073024-145073521 | chr7 | 145,073,024 | 145,073,521 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:116204659-116625155,chr7:145012779-145053275,chr7:145540657-146013736,chrX:84073018-84073515,chrY:18473310-18473807. |
Homo sapiens | ecDNA | ec_hsa_305 | hg19 | chr7:145540657-146013736 | chr7 | 145,540,657 | 146,013,736 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:116204659-116625155,chr7:145012779-145053275,chr7:145073024-145073521,chrX:84073018-84073515,chrY:18473310-18473807. |
Homo sapiens | ecDNA | ec_hsa_306 | hg19 | chr7:145542807-146013736 | chr7 | 145,542,807 | 146,013,736 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.This amplicon together with multiple chromosome segments to form the ecDNA:chr7:116204659-116608749,chr7:146062245-146101861,chrY:13984528-25333853;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr7:116204663-116608749;3.This amplicon together with multiple chromosome segments to form the ecDNA:chr7:116204659-116624503,chrX:106072756-106073253,chrX:111473619-111474116. |
Homo sapiens | ecDNA | ec_hsa_307 | hg19 | chr7:146062245-146101861 | chr7 | 146,062,245 | 146,101,861 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:116204659-116608749,chr7:145542807-146013736,chrY:13984528-25333853. |
Homo sapiens | ecDNA | ec_hsa_308 | hg19 | chr7:15067750-57957845 | chr7 | 15,067,750 | 57,957,845 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | AQP1,EGFR,GLI3,HOTTIP,HOXA1,HOXA9,HOXA-AS2,IKZF1,MACC1,TWIST1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66478328-66810483,chr12:66886379-67158536,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710. |
Homo sapiens | ecDNA | ec_hsa_309 | hg19 | chr7:15190151-57957845 | chr7 | 15,190,151 | 57,957,845 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | AQP1,EGFR,GLI3,HOTTIP,HOXA1,HOXA9,HOXA-AS2,IKZF1,MACC1,TWIST1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074. |
Homo sapiens | ecDNA | ec_hsa_310 | hg19 | chr7:15191151-57260799 | chr7 | 15,191,151 | 57,260,799 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | AQP1,EGFR,GLI3,HOTTIP,HOXA1,HOXA9,HOXA-AS2,IKZF1,MACC1,TWIST1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr8:115362979-115363483,chr12:30529734-30530238,chr12:57920204-58962354,chr12:59589390-59862924,chr12:60627354-61180686,chr12:66478328-66810483,chr12:66886367-67158548,chr12:68932602-69417042,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957. |
Homo sapiens | ecDNA | ec_hsa_311 | hg19 | chr7:15399102-57957845 | chr7 | 15,399,102 | 57,957,845 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | AQP1,EGFR,GLI3,HOTTIP,HOXA1,HOXA9,HOXA-AS2,IKZF1,MACC1,TWIST1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954. |
Homo sapiens | ecDNA | ec_hsa_312 | hg19 | chr7:19133084-157772014 | chr7 | 19,133,084 | 157,772,014 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | AKAP9,AQP1,ARHGEF5,BAIAP2L1,BRAF,CAV1,CBLL1,CDK14,CDK6,CROT,CUX1,DLX5,EGFR,EN2,ERVW-1,EZH2,FEZF1,GLI3,HOTTIP,HOXA1,HOXA9,HOXA-AS2,HSPB1,IKZF1,MACC1,MET,PAX4,RINT1,SMO,SMURF1,TAC1,TMEM140,TRIP6,TWIST1,UBE3C,WNT2,YWHAG | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_313 | hg19 | chr7:25627924-92690214 | chr7 | 25,627,924 | 92,690,214 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | AKAP9,AQP1,CDK14,CDK6,CROT,EGFR,ERVW-1,GLI3,HOTTIP,HOXA1,HOXA9,HOXA-AS2,HSPB1,IKZF1,YWHAG | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_314 | hg19 | chr7:26104388-26834700 | chr7 | 26,104,388 | 26,834,700 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_315 | hg19 | chr7:26484596-26911919 | chr7 | 26,484,596 | 26,911,919 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr7:67894756-68273255,chr7:73564114-73820788,chr7:91643149-92625840. |
Homo sapiens | ecDNA | ec_hsa_316 | hg19 | chr7:27031576-27389989 | chr7 | 27,031,576 | 27,389,989 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | HOTTIP,HOXA1,HOXA9,HOXA-AS2 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_317 | hg19 | chr7:33008879-33043572 | chr7 | 33,008,879 | 33,043,572 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:34451476-34472017,chr7:39893002-39923938,chr7:44005669-45019578,chr7:54034474-63305857,chr7:63635311-63635852,chr7:75287045-75699935,chr7:91591064-94810434,chr20:25748289-25782127,chr20:26035162-26075703. |
Homo sapiens | ecDNA | ec_hsa_318 | hg19 | chr7:33019431-33040041 | chr7 | 33,019,431 | 33,040,041 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr1:148175322-148195932,chr7:54365673-56353955,chr7:75217045-75699936. |
Homo sapiens | ecDNA | ec_hsa_319 | hg19 | chr7:36089270-37387055 | chr7 | 36,089,270 | 37,387,055 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_320 | hg19 | chr7:39560532-39931064 | chr7 | 39,560,532 | 39,931,064 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:91554454-92048961. |
Homo sapiens | ecDNA | ec_hsa_321 | hg19 | chr7:39893002-39923938 | chr7 | 39,893,002 | 39,923,938 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:34451476-34472017,chr7:33008879-33043572,chr7:44005669-45019578,chr7:54034474-63305857,chr7:63635311-63635852,chr7:75287045-75699935,chr7:91591064-94810434,chr20:25748289-25782127,chr20:26035162-26075703. |
Homo sapiens | ecDNA | ec_hsa_322 | hg19 | chr7:40425979-55700004 | chr7 | 40,425,979 | 55,700,004 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | EGFR,GLI3,IKZF1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748090-78748614,chr1:238182639-238183163,chr3:111174081-111384604,chr7:63668115-65540917,chr8:127493240-131484371,chr11:93361763-93362287,chr20:54188564-54189088,chrX:7505820-7506344,chrX:17239607-17240131,chrX:23578849-23579373,chrX:72338778-72339302,chrX:73257213-73257737,chrX:131541642-131542166,chrY:2844748-2845272,chrY:15291171-15291695,chrY:16497866-16498390. |
Homo sapiens | ecDNA | ec_hsa_323 | hg19 | chr7:41587829-101897851 | chr7 | 41,587,829 | 101,897,851 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | AKAP9,BAIAP2L1,CDK14,CDK6,CROT,CUX1,DLX5,EGFR,ERVW-1,GLI3,HSPB1,IKZF1,SMURF1,TAC1,TRIP6,YWHAG | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_324 | hg19 | chr7:41587829-97754308 | chr7 | 41,587,829 | 97,754,308 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | AKAP9,CDK14,CDK6,CROT,DLX5,EGFR,ERVW-1,GLI3,HSPB1,IKZF1,TAC1,YWHAG | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_325 | hg19 | chr7:44005669-45019578 | chr7 | 44,005,669 | 45,019,578 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:34451476-34472017,chr7:33008879-33043572,chr7:39893002-39923938,chr7:54034474-63305857,chr7:63635311-63635852,chr7:75287045-75699935,chr7:91591064-94810434,chr20:25748289-25782127,chr20:26035162-26075703. |
Homo sapiens | ecDNA | ec_hsa_326 | hg19 | chr7:44043198-101130548 | chr7 | 44,043,198 | 101,130,548 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | AKAP9,BAIAP2L1,CDK14,CDK6,CROT,DLX5,EGFR,ERVW-1,HSPB1,IKZF1,SMURF1,TAC1,TRIP6,YWHAG | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_327 | hg19 | chr7:47087994-55897454 | chr7 | 47,087,994 | 55,897,454 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | EGFR,IKZF1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_328 | hg19 | chr7:49880025-56131900 | chr7 | 49,880,025 | 56,131,900 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | EGFR,IKZF1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_329 | hg19 | chr7:51716229-94071360 | chr7 | 51,716,229 | 94,071,360 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | AKAP9,CDK14,CDK6,CROT,EGFR,ERVW-1,HSPB1,YWHAG | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_330 | hg19 | chr7:52176931-52490663 | chr7 | 52,176,931 | 52,490,663 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:91378817-93967491,chr13:32973920-32974175. |
Homo sapiens | ecDNA | ec_hsa_331 | hg19 | chr7:52176931-52600663 | chr7 | 52,176,931 | 52,600,663 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr13:32973970-32974176,chr2:143413933-143414139,chr7:52176931-52600663chr7:91378814-93967491 |
Homo sapiens | ecDNA | ec_hsa_332 | hg19 | chr7:52995605-134387134 | chr7 | 52,995,605 | 134,387,134 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | AKAP9,BAIAP2L1,CAV1,CBLL1,CDK14,CDK6,CROT,CUX1,DLX5,EGFR,ERVW-1,FEZF1,HSPB1,MET,PAX4,RINT1,SMO,SMURF1,TAC1,TRIP6,WNT2,YWHAG | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_333 | hg19 | chr7:53188059-57202187 | chr7 | 53,188,059 | 57,202,187 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr6:158951116-158951649,chr7:57477299-57497832,chr7:65160990-65393245,chr7:101688427-101688960. |
Homo sapiens | ecDNA | ec_hsa_334 | hg19 | chr7:53425123-57630930 | chr7 | 53,425,123 | 57,630,930 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_335 | hg19 | chr7:53437686-57065330 | chr7 | 53,437,686 | 57,065,330 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.This ecDNA is also found in another study(PMID:32807987;eccDNA ID:ec_hsa_6499);2.Pathology:GBM;3.This amplicon together with multiple chromosome segments to form the ecDNA:chr1:154210485-154211045,chr3:98554714-98555274,chr7:57477300-57497860,chr7:65160992-65361551,chrX:107240015-107240575. |
Homo sapiens | ecDNA | ec_hsa_336 | hg19 | chr7:53500000-56131900 | chr7 | 53,500,000 | 56,131,900 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_337 | hg19 | chr7:53656766-55777221 | chr7 | 53,656,766 | 55,777,221 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_338 | hg19 | chr7:53769003-56569035 | chr7 | 53,769,003 | 56,569,035 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:57477358-57477869 |
Homo sapiens | ecDNA | ec_hsa_339 | hg19 | chr7:54034474-63305857 | chr7 | 54,034,474 | 63,305,857 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:34451476-34472017,chr7:33008879-33043572,chr7:39893002-39923938,chr7:44005669-45019578,chr7:63635311-63635852,chr7:75287045-75699935,chr7:91591064-94810434,chr20:25748289-25782127,chr20:26035162-26075703. |
Homo sapiens | ecDNA | ec_hsa_340 | hg19 | chr7:54121355-56593687 | chr7 | 54,121,355 | 56,593,687 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_341 | hg19 | chr7:54175400-55741898 | chr7 | 54,175,400 | 55,741,898 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr1:148175386-148295895. |
Homo sapiens | ecDNA | ec_hsa_342 | hg19 | chr7:54215158-55657741 | chr7 | 54,215,158 | 55,657,741 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_343 | hg19 | chr7:54329983-55487522 | chr7 | 54,329,983 | 55,487,522 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.This ecDNA is also found in another study(PMID:32807987;eccDNA ID:ec_hsa_6503);2.Pathology:GBM.3.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:62450034-62660568,chr12:63199780-63200314,chr12:65892578-65893112 |
Homo sapiens | ecDNA | ec_hsa_344 | hg19 | chr7:54353143-55836198 | chr7 | 54,353,143 | 55,836,198 | Disease | Brain | Glioblastoma | Experiment | FISH&AmpliconArchitect | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_345 | hg19 | chr7:54365673-56353955 | chr7 | 54,365,673 | 56,353,955 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr1:148175322-148195932,chr7:33019431-33040041,chr7:75217045-75699936. |
Homo sapiens | ecDNA | ec_hsa_346 | hg19 | chr7:54410859-55849500 | chr7 | 54,410,859 | 55,849,500 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_347 | hg19 | chr7:54418230-55605350 | chr7 | 54,418,230 | 55,605,350 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_348 | hg19 | chr7:54492203-55717667 | chr7 | 54,492,203 | 55,717,667 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:Recurent Glioblastoma and necrosis;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr2:156427797-156528071;3.This amplicon together with multiple chromosome segments to form the ecDNA:chr2:156527854-156528081 |
Homo sapiens | ecDNA | ec_hsa_349 | hg19 | chr7:54569593-54770057 | chr7 | 54,569,593 | 54,770,057 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:54791261-55738434. |
Homo sapiens | ecDNA | ec_hsa_350 | hg19 | chr7:54623991-55309565 | chr7 | 54,623,991 | 55,309,565 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_351 | hg19 | chr7:54649106-55477598 | chr7 | 54,649,106 | 55,477,598 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716264-11716766,chr12:57409417-58562513,chr12:70496679-70497181. |
Homo sapiens | ecDNA | ec_hsa_352 | hg19 | chr7:54690674-55440187 | chr7 | 54,690,674 | 55,440,187 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_353 | hg19 | chr7:54699492-55738434 | chr7 | 54,699,492 | 55,738,434 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_354 | hg19 | chr7:54706136-55607505 | chr7 | 54,706,136 | 55,607,505 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_355 | hg19 | chr7:54728544-55629913 | chr7 | 54,728,544 | 55,629,913 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_356 | hg19 | chr7:54729139-55479139 | chr7 | 54,729,139 | 55,479,139 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716211-11716729,chr8:127442805-132833866,chr8:135105698-135663156,chr12:57496689-58315685. |
Homo sapiens | ecDNA | ec_hsa_357 | hg19 | chr7:54729876-55631246 | chr7 | 54,729,876 | 55,631,246 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_358 | hg19 | chr7:54733063-55408485 | chr7 | 54,733,063 | 55,408,485 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | This ecDNA is also found in another study(PMID:32807987;eccDNA ID:ec_hsa_6512);Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_359 | hg19 | chr7:54766766-55777221 | chr7 | 54,766,766 | 55,777,221 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_360 | hg19 | chr7:54786492-55477598 | chr7 | 54,786,492 | 55,477,598 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716263-11716767,chr8:127442805-132832068,chr8:135105698-135663156,chr12:57496724-58315685,chr15:50377663-50378167.2.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716232-11716765,chr8:127442805-132832068,chr8:135105698-135663156,chr12:57496686-58315685,chr15:50377640-50378173.3.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716256-11716765,chr8:127442805-132832068,chr8:135105698-135663156,chr12:57496714-58315685,chr15:50377651-50398160.4.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716256-11716765,chr8:127442805-132832068,chr8:135105698-135663156,chr12:57496714-58315685,chr15:50377651-50398160. |
Homo sapiens | ecDNA | ec_hsa_361 | hg19 | chr7:54791261-55738434 | chr7 | 54,791,261 | 55,738,434 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:54569593-54770057. |
Homo sapiens | ecDNA | ec_hsa_362 | hg19 | chr7:54793202-55548745 | chr7 | 54,793,202 | 55,548,745 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716261-11716764,chr3:111174081-111274583,chr8:126238838-132308654,chr8:135119160-136243156,chr12:57503752-58562513.2.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716269-11716767,chr3:111174081-111274578,chr5:57853485-57853983,chr8:127398869-132765370,chr8:135119160-136243156,chr12:57399247-58562513,chrX:154748217-154748715. |
Homo sapiens | ecDNA | ec_hsa_363 | hg19 | chr7:54796492-55548745 | chr7 | 54,796,492 | 55,548,745 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716236-11716766,chr8:127442805-133327046,chr8:135105698-135663156,chr12:57496694-58315685,chr15:50377642-50378172. |
Homo sapiens | ecDNA | ec_hsa_364 | hg19 | chr7:54809106-55477598 | chr7 | 54,809,106 | 55,477,598 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716267-11716767,chr5:57853483-57853983,chr7:5786928-5787428,chr8:126581168-126601667,chr8:127009013-132643908,chr8:135119160-136243156,chr12:57502937-58562513,chr12:70496679-70497179.2.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716277-11716767,chr3:111174081-111274570,chr5:57853493-57853983,chr8:105882036-105882526,chr8:127399968-132519689,chr8:135119160-136243156chr12:57503752-58562513,chr21:23357595-23358085,chrX:116866170-116866660.3.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716283-11716766,chr8:127210847-133305515,chr8:135082366-135082849,chr8:135105698-135699519,chr12:57503737-58357571. |
Homo sapiens | ecDNA | ec_hsa_365 | hg19 | chr7:54828704-55334339 | chr7 | 54,828,704 | 55,334,339 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_366 | hg19 | chr7:54829291-55541765 | chr7 | 54,829,291 | 55,541,765 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | EGFR | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_367 | hg19 | chr7:57477299-57497832 | chr7 | 57,477,299 | 57,497,832 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr6:158951116-158951649,chr7:53188059-57202187,chr7:65160990-65393245,chr7:101688427-101688960. |
Homo sapiens | ecDNA | ec_hsa_368 | hg19 | chr7:57477300-57497860 | chr7 | 57,477,300 | 57,497,860 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr1:154210485-154211045,chr3:98554714-98555274,chr7:53437686-57065330,chr7:65160992-65361551,chrX:107240015-107240575. |
Homo sapiens | ecDNA | ec_hsa_369 | hg19 | chr7:57477358-57477869 | chr7 | 57,477,358 | 57,477,869 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:53769003-56569035 |
Homo sapiens | ecDNA | ec_hsa_370 | hg19 | chr7:5786928-5787428 | chr7 | 5,786,928 | 5,787,428 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716267-11716767,chr5:57853483-57853983,chr7:54809106-55477598,chr8:126581168-126601667,chr8:127009013-132643908,chr8:135119160-136243156,chr12:57502937-58562513,chr12:70496679-70497179. |
Homo sapiens | ecDNA | ec_hsa_371 | hg19 | chr7:63635311-63635852 | chr7 | 63,635,311 | 63,635,852 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:34451476-34472017,chr7:33008879-33043572,chr7:39893002-39923938,chr7:44005669-45019578,chr7:54034474-63305857,chr7:75287045-75699935,chr7:91591064-94810434,chr20:25748289-25782127,chr20:26035162-26075703. |
Homo sapiens | ecDNA | ec_hsa_372 | hg19 | chr7:63668115-65540917 | chr7 | 63,668,115 | 65,540,917 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748090-78748614,chr1:238182639-238183163,chr3:111174081-111384604,chr7:40425979-55700004,chr8:127493240-131484371,chr11:93361763-93362287,chr20:54188564-54189088,chrX:7505820-7506344,chrX:17239607-17240131,chrX:23578849-23579373,chrX:72338778-72339302,chrX:73257213-73257737,chrX:131541642-131542166,chrY:2844748-2845272,chrY:15291171-15291695,chrY:16497866-16498390. |
Homo sapiens | ecDNA | ec_hsa_373 | hg19 | chr7:64146540-120000000 | chr7 | 64,146,540 | 120,000,000 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | AKAP9,BAIAP2L1,CAV1,CBLL1,CDK14,CDK6,CROT,CUX1,DLX5,ERVW-1,HSPB1,MET,RINT1,SMURF1,TAC1,TRIP6,WNT2,YWHAG | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_374 | hg19 | chr7:64146540-135045345 | chr7 | 64,146,540 | 135,045,345 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | AKAP9,BAIAP2L1,CAV1,CBLL1,CDK14,CDK6,CROT,CUX1,DLX5,ERVW-1,FEZF1,HSPB1,MET,PAX4,RINT1,SMO,SMURF1,TAC1,TMEM140,TRIP6,WNT2,YWHAG | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_375 | hg19 | chr7:64465662-66614306 | chr7 | 64,465,662 | 66,614,306 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_376 | hg19 | chr7:65160990-65393245 | chr7 | 65,160,990 | 65,393,245 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr6:158951116-158951649,chr7:53188059-57202187,chr7:57477299-57497832,chr7:101688427-101688960. |
Homo sapiens | ecDNA | ec_hsa_377 | hg19 | chr7:65160992-65361551 | chr7 | 65,160,992 | 65,361,551 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr1:154210485-154211045,chr3:98554714-98555274,chr7:53437686-57065330,chr7:57477300-57497860,chrX:107240015-107240575. |
Homo sapiens | ecDNA | ec_hsa_378 | hg19 | chr7:67894756-68273255 | chr7 | 67,894,756 | 68,273,255 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr7:26484596-26911919,chr7:73564114-73820788,chr7:91643149-92625840. |
Homo sapiens | ecDNA | ec_hsa_379 | hg19 | chr7:73564114-73820788 | chr7 | 73,564,114 | 73,820,788 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:26484596-26911919,chr7:67894756-68273255,chr7:91643149-92625840. |
Homo sapiens | ecDNA | ec_hsa_380 | hg19 | chr7:75217045-75699936 | chr7 | 75,217,045 | 75,699,936 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr1:148175322-148195932,chr7:33019431-33040041,chr7:54365673-56353955. |
Homo sapiens | ecDNA | ec_hsa_381 | hg19 | chr7:75287045-75699935 | chr7 | 75,287,045 | 75,699,935 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:34451476-34472017,chr7:33008879-33043572,chr7:39893002-39923938,chr7:44005669-45019578,chr7:54034474-63305857,chr7:63635311-63635852,chr7:91591064-94810434,chr20:25748289-25782127,chr20:26035162-26075703. |
Homo sapiens | ecDNA | ec_hsa_382 | hg19 | chr7:80250625-80897964 | chr7 | 80,250,625 | 80,897,964 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr5:58968187-58988720. |
Homo sapiens | ecDNA | ec_hsa_383 | hg19 | chr7:88470001-88668923 | chr7 | 88,470,001 | 88,668,923 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_384 | hg19 | chr7:8979968-11367047 | chr7 | 8,979,968 | 11,367,047 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_385 | hg19 | chr7:91378814-93967491 | chr7 | 91,378,814 | 93,967,491 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | AKAP9,CDK6,ERVW-1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr13:32973970-32974176,chr2:143413933-143414139,chr7:52176931-52600663 |
Homo sapiens | ecDNA | ec_hsa_386 | hg19 | chr7:91378817-93967491 | chr7 | 91,378,817 | 93,967,491 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | AKAP9,CDK6,ERVW-1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:52176931-52490663,chr13:32973920-32974175. |
Homo sapiens | ecDNA | ec_hsa_387 | hg19 | chr7:91591064-94810434 | chr7 | 91,591,064 | 94,810,434 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | AKAP9,CDK6,ERVW-1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:34451476-34472017,chr7:33008879-33043572,chr7:39893002-39923938,chr7:44005669-45019578,chr7:54034474-63305857,chr7:63635311-63635852,chr7:75287045-75699935,chr7:91591064-94810434,chr20:26035162-26075703. |
Homo sapiens | ecDNA | ec_hsa_388 | hg19 | chr7:91643149-92625840 | chr7 | 91,643,149 | 92,625,840 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | AKAP9,CDK6,ERVW-1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:26484596-26911919,chr7:67894756-68273255,chr7:73564114-73820788. |
Homo sapiens | ecDNA | ec_hsa_389 | hg19 | chr7:9207638-77651073 | chr7 | 9,207,638 | 77,651,073 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | AQP1,EGFR,ETV1,GLI3,HOTTIP,HOXA1,HOXA9,HOXA-AS2,HSPB1,IKZF1,MACC1,TWIST1,YWHAG | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_390 | hg19 | chr7:94022783-94297472 | chr7 | 94,022,783 | 94,297,472 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr7:10826575-11146199. |
Homo sapiens | ecDNA | ec_hsa_391 | hg19 | chr7:99353983-100999083 | chr7 | 99,353,983 | 100,999,083 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | TRIP6 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_392 | hg19 | chr8:105882036-105882526 | chr8 | 105,882,036 | 105,882,526 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716277-11716767,chr3:111174081-111274570,chr5:57853493-57853983,chr7:54809106-55477598,chr8:127399968-132519689,chr8:135119160-136243156chr12:57503752-58562513,chr21:23357595-23358085,chrX:116866170-116866660. |
Homo sapiens | ecDNA | ec_hsa_393 | hg19 | chr8:115362976-115363481 | chr8 | 115,362,976 | 115,363,481 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954. |
Homo sapiens | ecDNA | ec_hsa_394 | hg19 | chr8:115362979-115363483 | chr8 | 115,362,979 | 115,363,483 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr12:30529734-30530238,chr12:57920204-58962354,chr12:59589390-59862924,chr12:60627354-61180686,chr12:66478328-66810483,chr12:66886367-67158548,chr12:68932602-69417042,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957. |
Homo sapiens | ecDNA | ec_hsa_395 | hg19 | chr8:115362987-115363479 | chr8 | 115,362,987 | 115,363,479 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr12:57920218-58962354,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66478328-66810483,chr12:66886379-67158536,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710. |
Homo sapiens | ecDNA | ec_hsa_396 | hg19 | chr8:115363009-115363483 | chr8 | 115,363,009 | 115,363,483 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074. |
Homo sapiens | ecDNA | ec_hsa_397 | hg19 | chr8:115363018-115363483 | chr8 | 115,363,018 | 115,363,483 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957. |
Homo sapiens | ecDNA | ec_hsa_398 | hg19 | chr8:126238838-132308654 | chr8 | 126,238,838 | 132,308,654 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | MYC,PCAT1,PVT1,TRIB1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716261-11716764,chr3:111174081-111274583,chr7:54793202-55548745,chr8:135119160-136243156,chr12:57503752-58562513. |
Homo sapiens | ecDNA | ec_hsa_399 | hg19 | chr8:126581168-126601667 | chr8 | 126,581,168 | 126,601,667 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716267-11716767,chr5:57853483-57853983,chr7:5786928-5787428,chr7:54809106-55477598,chr8:127009013-132643908,chr8:135119160-136243156,chr12:57502937-58562513,chr12:70496679-70497179. |
Homo sapiens | ecDNA | ec_hsa_400 | hg19 | chr8:127009013-132643908 | chr8 | 127,009,013 | 132,643,908 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | MYC,PCAT1,PVT1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716267-11716767,chr5:57853483-57853983,chr7:5786928-5787428,chr7:54809106-55477598,chr8:126581168-126601667,chr8:135119160-136243156,chr12:57502937-58562513,chr12:70496679-70497179. |